PSIBLAST alignment of GI: 254780464 and protein with PDB id: 1hr6
>gi|15826319|pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475
>gi|15826321|pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase Length = 475
>gi|15826323|pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase Length = 475
>gi|15826325|pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase Length = 475
>gi|15826327|pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 475
>gi|15826329|pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 475
>gi|15826331|pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 475
>gi|15826333|pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 475
>gi|15826335|pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Complexed With Cytochrome C Oxidase Iv Signal Peptide Length = 475
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 68/414 (16%), Positives = 145/414 (35%), Gaps = 20/414 (4%)
Query: 2 NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61
N ++S ++G+ V T P + + + I AGSR E + G H L+ + FK T
Sbjct: 5 NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEG 64
Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERER- 120
+ + E +E +GG+ +S E+ Y A V + V L+++ + + +++ ++
Sbjct: 65 RAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKL 124
Query: 121 ---NVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSR 177
+ E E + L + P P + + F +
Sbjct: 125 SAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTP 184
Query: 178 NYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAK------------IKESMKPAVYVGG 225
T V + + K + +
Sbjct: 185 ENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPELF 244
Query: 226 EYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSIS 285
+ + Q+ + A G GM SRL+ V + +
Sbjct: 245 HIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCV 304
Query: 286 AHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLENI----EQREIDKECAKIHAK 341
A + ++SD+G+ I+ + + I + + + N + E+ + ++ +
Sbjct: 305 AFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSS 364
Query: 342 LIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSST 395
L+ + E + ++ +QV+ G + ++I I + +DI VA+ IF+
Sbjct: 365 LLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGN 418