PSIBLAST alignment of GI: 254780464 and protein with PDB id: 1hr6

>gi|15826319|pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475
>gi|15826321|pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase Length = 475
>gi|15826323|pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase Length = 475
>gi|15826325|pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase Length = 475
>gi|15826327|pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 475
>gi|15826329|pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 475
>gi|15826331|pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 475
>gi|15826333|pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 475
>gi|15826335|pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Complexed With Cytochrome C Oxidase Iv Signal Peptide Length = 475
 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 145/414 (35%), Gaps = 20/414 (4%)

Query: 2   NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61
           N ++S  ++G+ V T   P   + + + I AGSR E +   G  H L+ + FK T     
Sbjct: 5   NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEG 64

Query: 62  KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERER- 120
           + + E +E +GG+    +S E+  Y A V  + V   L+++ + +        +++ ++ 
Sbjct: 65  RAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKL 124

Query: 121 ---NVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSR 177
                + E     E    + L             +  P    P     +  +    F + 
Sbjct: 125 SAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTP 184

Query: 178 NYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAK------------IKESMKPAVYVGG 225
             T      V              +       + K                +   +    
Sbjct: 185 ENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPELF 244

Query: 226 EYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSIS 285
                 +         +     Q+      +  A   G GM SRL+  V  +     +  
Sbjct: 245 HIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCV 304

Query: 286 AHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLENI----EQREIDKECAKIHAK 341
           A + ++SD+G+  I+ +   +        I + + +   N      + E+ +   ++ + 
Sbjct: 305 AFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSS 364

Query: 342 LIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSST 395
           L+ + E   +   ++ +QV+  G  +   ++I  I  +  +DI  VA+ IF+  
Sbjct: 365 LLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGN 418