RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780464|ref|YP_003064877.1| M16 family peptidase
[Candidatus Liberibacter asiaticus str. psy62]
(424 letters)
>gnl|CDD|30957 COG0612, PqqL, Predicted Zn-dependent peptidases [General function
prediction only].
Length = 438
Score = 297 bits (760), Expect = 5e-81
Identities = 146/416 (35%), Positives = 231/416 (55%), Gaps = 13/416 (3%)
Query: 1 MNLRISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKR 59
L++ +G+ VIT P + + V ++AGSR E + G+AHFLEHM FKGTT
Sbjct: 15 PGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGL 74
Query: 60 TAKEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERE 119
+ E+ E EK+GG +NA+TS ++T Y+ VL +++ AL+++ D+L N +F+ ++ERE
Sbjct: 75 PSAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVERE 134
Query: 120 RNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNY 179
+ V+LEEI M +DD D R E ++ + +GRPILG E+I + T E + F + Y
Sbjct: 135 KGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWY 194
Query: 180 TADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGE------YIQKRDL 233
D M +V VG VD E V +E YF A + P +G E ++ DL
Sbjct: 195 QPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDL 254
Query: 234 AEEHMMLGFNGCAYQSRDFYLTNILASILGDGM-SSRLFQEVREKRGLCYSISAHHENFS 292
+ + LG+ G Y S D Y +L + L G SSRLFQE+REKRGL YS+S+ + S
Sbjct: 255 EQAWLALGYPGPDYDSPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDFLS 314
Query: 293 DNGVLYIASATAKENIMALTSSIVEVVQSLLEN----IEQREIDKECAKIHAKLIKSQER 348
D+G+ I + TA EN + E++++L + + E+D + L+ S +
Sbjct: 315 DSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDS 374
Query: 349 SYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFS-STPTLAILGP 403
A + + ++ GS++ E++++ I A+T ED+ VAKK+ + T+ +LGP
Sbjct: 375 PSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGP 430
>gnl|CDD|36178 KOG0960, KOG0960, KOG0960, Mitochondrial processing peptidase, beta
subunit, and related enzymes (insulinase superfamily)
[Posttranslational modification, protein turnover,
chaperones].
Length = 467
Score = 215 bits (549), Expect = 2e-56
Identities = 122/415 (29%), Positives = 213/415 (51%), Gaps = 16/415 (3%)
Query: 4 RISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKE 63
++ +G+ V TE +A V V I AGSR E ++ +G AHFLEH+ FKGT R+
Sbjct: 35 EVTTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAA 94
Query: 64 IVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVV 123
+ EIE +G +NAYTS E T Y+A L + VP A++I+ D+L NS S IERER+V+
Sbjct: 95 LELEIENIGAHLNAYTSREQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVI 154
Query: 124 LEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADR 183
L E+ + + + + ++ +GR ILG E I S + + +++ +Y A R
Sbjct: 155 LREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPSENIKSISRADLKDYINTHYKASR 214
Query: 184 MYVVCVGAVDHEFCVSQVESYFNVCSVAKIKES---MKPAVYVGGEY-IQKRDLAEEHMM 239
M + G V HE V E YF S + + + PA + G E ++ DL H+
Sbjct: 215 MVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDDDLPLAHIA 274
Query: 240 LGFNGCAYQSRDFYLTNILASILGD---------GMSSRLFQEVREKRGLCYSISAHHEN 290
+ G ++ D++ + +I+G+ +SSRL Q++++ + LC+S + + +
Sbjct: 275 IAVEGVSWAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQ-LCHSFQSFNTS 333
Query: 291 FSDNGVLYIASATAKEN-IMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERS 349
+ D G+ I T I L S+++ L ++ + E+++ ++ L+ S + +
Sbjct: 334 YKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGT 393
Query: 350 YLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVA-KKIFSSTPTLAILGP 403
A +I +Q++ G + ++ I A+T +D+ VA K I+ +A +GP
Sbjct: 394 TPIAEDIGRQLLTYGRRIPLAELEARIDAVTAKDVREVASKYIYDKDIAIAAVGP 448
>gnl|CDD|37278 KOG2067, KOG2067, KOG2067, Mitochondrial processing peptidase,
alpha subunit [Posttranslational modification, protein
turnover, chaperones].
Length = 472
Score = 192 bits (489), Expect = 2e-49
Identities = 113/437 (25%), Positives = 201/437 (45%), Gaps = 33/437 (7%)
Query: 2 NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61
N +++ +G+ V +E P V + I +GSR E + G++HFLE + FK T + ++
Sbjct: 24 NTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSS 83
Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121
KEI+ E+EK+GG+ + +S E Y A + V +E++ D + N F ++E R
Sbjct: 84 KEILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARR 143
Query: 122 VVLEEIGMSEDDSWDFLDARFSEMV----WKDQIIGRPILGKPETISSFTPEKIISFVSR 177
V EI ++ W + +EM+ + +G P+L E I E + ++
Sbjct: 144 AVKYEI----EELWMRPEPLLTEMIHSAAYSGNTLGLPLLCPEENIDKINREVLEEYLKY 199
Query: 178 NYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKP-AVYVGGEYIQKRDLAE- 235
YT +RM + VG V+HE V E K+ + A Y GGE D +
Sbjct: 200 FYTPERMVLAGVG-VEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQV 258
Query: 236 ------EHMMLGFNGCAYQSRDFYLTNILASILG-----------DGMSSRLFQEVREKR 278
H++LGF GC++ DF +L ++G GM SRL+ V +
Sbjct: 259 TGGPELTHVVLGFEGCSWNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRY 318
Query: 279 GLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKI 338
YS +A + ++SD G+ I ++ + I + + ++ + Q E+++ ++
Sbjct: 319 HWVYSCTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQL 378
Query: 339 HAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTL 398
+ L+ + E + ++ +QV+ G ++ I I +T DI VA K+ + P++
Sbjct: 379 KSMLLMNLESRPVAFEDVGRQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLTGKPSV 438
Query: 399 AILG-----PPMDHVPT 410
A G P DH+
Sbjct: 439 AAFGDGTGLPTYDHIGN 455
>gnl|CDD|144319 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16).
Length = 149
Score = 132 bits (333), Expect = 2e-31
Identities = 58/139 (41%), Positives = 87/139 (62%)
Query: 20 PIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYT 79
P D++ V + + AGSR E + +G+AHFLEHM FKGT K + E+ EE+EK+GG +NAYT
Sbjct: 9 PADTSAVGLWVDAGSRYEPDDNNGLAHFLEHMAFKGTKKYPSNELEEELEKLGGSLNAYT 68
Query: 80 SLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLD 139
S EHT Y+ VL + +P A++ + D N F+PS++ERER VV E+ + + + L
Sbjct: 69 SREHTVYYVEVLNDDLPKAVDRLADFFLNPLFSPSEVERERLVVEYEVEAVDAEPQEVLL 128
Query: 140 ARFSEMVWKDQIIGRPILG 158
++ +GR +LG
Sbjct: 129 DNLHAAAYRGTPLGRSLLG 147
>gnl|CDD|37794 KOG2583, KOG2583, KOG2583, Ubiquinol cytochrome c reductase,
subunit QCR2 [Energy production and conversion].
Length = 429
Score = 118 bits (298), Expect = 2e-27
Identities = 93/416 (22%), Positives = 181/416 (43%), Gaps = 21/416 (5%)
Query: 7 KTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVE 66
K +G+TV + P + + + RAGSR E ++ G++H L + + + T +R+A +IV
Sbjct: 27 KLVNGLTVASREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVR 86
Query: 67 EIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEE 126
E E++GG +++ + E L++ + L ++GD+L +F P ++E +VVL
Sbjct: 87 ESEQLGGTLSSTATRELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELE---DVVLAT 143
Query: 127 I--GMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRM 184
I ++ + + +++ +G + + S + ++ F ++++
Sbjct: 144 IDADLAYQTPYTIAIEQLHAAAFRNG-LGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNA 202
Query: 185 YVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLGFNG 244
+V V VDH+ + Y + +K + PA Y GGE + H+ + G
Sbjct: 203 VLVGVN-VDHDDLKQFADEYAPIRDGLPLKPA--PAKYSGGEARKDARGNRVHVAVAGEG 259
Query: 245 CAYQSRDFYLTN-ILASILGDGMSSRLFQEVREKRGLC-----YSISAHHENFSDNGVLY 298
A + +L + LG+ + + + S SA + +SD+G+
Sbjct: 260 AAAGNLKVLAAQAVLLAALGNSAPVKRGTGLLSEAAGAAGEQGASASAFNAPYSDSGLFG 319
Query: 299 IASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISK 358
+ + + SS V+ ++S L +ID K K +K+ S + ALE++
Sbjct: 320 VYVSAQGSQAGKVVSSEVKKLKSAL----VSDIDNAKVKAAIKALKASYLSSVEALELAT 375
Query: 359 QVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAILGPPMDHVPTTSEL 414
+ + I I +T D+ AKK S +LA G + +VP EL
Sbjct: 376 GS-QANLVSEPDAFIQQIDKVTASDVQKAAKKFLSGKLSLAAYG-NLSNVPYLDEL 429
>gnl|CDD|147402 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.
Peptidase M16 consists of two structurally related
domains. One is the active peptidase, whereas the other
is inactive. The two domains hold the substrate like a
clamp.
Length = 182
Score = 114 bits (288), Expect = 3e-26
Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 8/177 (4%)
Query: 165 SFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKE-----SMKP 219
S T E + F ++Y+ D M +V VG VD + ++ E YF + K ++P
Sbjct: 1 SLTREDLKDFYKKHYSPDNMVLVVVGDVDLDELLALAEKYFGDLPASPPKPKPREPPLEP 60
Query: 220 AVYVGGEYI-QKRDLAEEHMMLGFNGCAY-QSRDFYLTNILASILGDGMSSRLFQEVREK 277
G E + +D+ + + L F G D ++LA +LG G SSRLFQE+REK
Sbjct: 61 EELTGKEVVVPDKDVPQAKLALAFPGPPLGNDPDSAALDVLAELLGGGASSRLFQELREK 120
Query: 278 RGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLEN-IEQREIDK 333
GL YS+SA +++SD G+ I + EN+ + I+E ++ L E I + E+++
Sbjct: 121 EGLAYSVSAFLDSYSDTGLFGIYADLDPENLDEVIELILEELKKLAEEGITEEELER 177
>gnl|CDD|36177 KOG0959, KOG0959, KOG0959, N-arginine dibasic convertase NRD1 and
related Zn2+-dependent endopeptidases, insulinase
superfamily [Posttranslational modification, protein
turnover, chaperones].
Length = 974
Score = 99.0 bits (246), Expect = 2e-21
Identities = 78/368 (21%), Positives = 142/368 (38%), Gaps = 30/368 (8%)
Query: 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRT-A 61
R + ++G+ + P D + ++++ GS ++ ++ G+AHF EHMLF G+ K
Sbjct: 29 RGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDE 88
Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121
E + + K GG NAYT EHT+Y+ V +H+ AL+ S+ FN S ERE
Sbjct: 89 NEYSKFLSKNGGSSNAYTDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVG 148
Query: 122 VVLEEI-GMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISS-----FTPEKIISFV 175
V E D W D + + G +T+ ++++ F
Sbjct: 149 AVDSEHEKNLNSDGW-RFDQLLRSLSNPGHPYSKFSTGNKKTLLEGPREIDLRDELLKFY 207
Query: 176 SRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKR---- 231
Y+++ M +V VG + S V F+ S K + P E ++K
Sbjct: 208 KNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPEPPFLPEELKKLVRVV 267
Query: 232 ---DLAEEHMMLGFNGCAYQSRDFYLTN---ILASILGDGMSSRLFQEVREKRGLCYSIS 285
D + Y + L+ ++G L ++ + G S+
Sbjct: 268 PIKDGRSLMISWPVPP----LNHHYKSKPLRYLSHLIGHEGPGSLLSYLK-RLGWATSLE 322
Query: 286 AHHENFS-----DNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHA 340
A F+ N + + E++ + + ++ L ++ I KE I
Sbjct: 323 AGIPEFASGYSFFNVSIDLTDE-GLEHVDEIIGLVFNYIKLLQSAGPEKWIFKELQLISE 381
Query: 341 KLIKSQER 348
+ Q++
Sbjct: 382 VKFRFQDK 389
>gnl|CDD|31228 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases,
insulinase-like [Posttranslational modification, protein
turnover, chaperones].
Length = 937
Score = 94.6 bits (235), Expect = 5e-20
Identities = 73/327 (22%), Positives = 129/327 (39%), Gaps = 20/327 (6%)
Query: 22 DSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKR-TAKEIVEEIEKVGGDINAYTS 80
D + + + GS ++ +E G+AHFLEHMLF G+ K E + K GG NA T+
Sbjct: 44 DKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNASTA 103
Query: 81 LEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGM-SEDDSWDFLD 139
E T+++ V + + AL+ D FN ++RERN V E M D W
Sbjct: 104 GERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRM-Y 162
Query: 140 ARFSEMVWKDQIIGRPILGKPETISSF----TPEKIISFVSRNYTADRMYVVCVGAVDHE 195
+ + + G ET+S +++ F ++Y+A+ M +V G +
Sbjct: 163 QVQALTANPGHPLSKFSTGNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLD 222
Query: 196 FCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAE-----EHMMLGF----NGCA 246
F K P V E K + + F N
Sbjct: 223 ELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTGKIIHIVPAKPRPRLRIYFPIDDNSAK 282
Query: 247 YQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKE 306
++S+ L+ ++G+ L ++++ GL +SA + S N ++ S +
Sbjct: 283 FRSKPD---EYLSHLIGNESPGSLLAWLKKQ-GLITELSAGLDPISGNYGVFAISYELTD 338
Query: 307 NIMALTSSIVEVVQSLLENIEQREIDK 333
+A ++ + L + ++ I K
Sbjct: 339 KGLAHYDRVIALTFQYLNLLREKGIPK 365
>gnl|CDD|31229 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 49.5 bits (118), Expect = 2e-06
Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 57/355 (16%)
Query: 35 RNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEK--VGGDINAYTSLEHTSYHAWVLK 92
+ E + G+AH LEH + G+ K K+ ++ K + +NA+T + T Y
Sbjct: 50 KTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKTVY------ 103
Query: 93 EHVPLALEIIGDMLS------NSSFNPS-------------DIERERN-----VVLEEIG 128
P + D + ++ F+P + + E N VV E+
Sbjct: 104 ---PASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMK 160
Query: 129 MSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVVC 188
+ L + ++ G G P+ I T E+ +F ++Y +
Sbjct: 161 GAYSSGESVLSRAMQQSLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFV 220
Query: 189 VGAVDHEFCVSQV-ESYFNVCSVAKIKESMKP------AVYVGGEYIQKRDLAEEH---M 238
G + E + + E ++ + EY D +E +
Sbjct: 221 YGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAFKKPRRKVLEYPISFDEEDEDQGLL 280
Query: 239 MLGFNGCAYQSRDFYLT---NILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNG 295
L + G + D + +L IL D +S L Q + E GL + A D+
Sbjct: 281 SLSWLGGSAS--DAEDSLALEVLEEILLDSAASPLTQALIES-GLGF---ADVSGSYDSD 334
Query: 296 VLYIASATAKENIMALTSSIVE-VVQSLLENIEQREIDKEC--AKIHAKLIKSQE 347
+ + + + + ++ +V S L+ + + IDK+ A +H +E
Sbjct: 335 LKETIFSVGLKGVSEEKIAKLKNLVLSTLKELVKNGIDKKLIEAILHQLEFSLKE 389
Score = 37.9 bits (88), Expect = 0.006
Identities = 71/390 (18%), Positives = 141/390 (36%), Gaps = 53/390 (13%)
Query: 47 FLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSL-----------EHTSYHAWVLKEHV 95
F + GT + KE++ +IE+ G I+ S+ S L+ V
Sbjct: 571 FAFALTNLGTETYSYKELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKV 630
Query: 96 PLALEIIGDMLSNSSFNPSDIERERNVV---LEEIGMSEDDSWDFL-----DARFSEM-V 146
E+I ++L+N+ F D ER + ++ L ++ S +S + ++R S
Sbjct: 631 EKLFELIREILANTDF--HDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGA 688
Query: 147 WKDQIIGRPILGKPETISSFTPEKIISFVS------RNY--TADRMYVVCVGAVDHEFCV 198
K+ + G + +SS E ++ R + + + +G +D +
Sbjct: 689 LKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDIDKILDL 748
Query: 199 SQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAE--------EHMMLGFN--GCAYQ 248
+E+ + P L+E + L F+ G Y
Sbjct: 749 --LENPLLKFLEHLLPGFELPTPPKNPHLDLISSLSEATIIPSPVAYNALAFSIGGLPYT 806
Query: 249 SRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENI 308
D+ +L+ LG G L+ ++REK G Y SA + + GV AS +
Sbjct: 807 HPDYAALQVLSEYLGSGY---LWNKIREK-GGAYGASASIDA--NRGVFSFASYRDPNIL 860
Query: 309 MALTSSIVEVVQSLLE-NIEQREIDKECAKIHA-KLIKSQERSYLRALEISKQVMFCGSI 366
+ V+ L N ++R++++ A + + + E + + + +
Sbjct: 861 KTY-KVFRKSVKDLASGNFDERDLEE--AILGIISTLDTPESPASEGSKSFYRDLSGLTD 917
Query: 367 LCSEKIIDTISAITCEDIVGVAKKIFSSTP 396
+ + + +T EDI V K +
Sbjct: 918 EERQAFRERLLDVTKEDIKEVMDKYLLNFS 947
>gnl|CDD|36179 KOG0961, KOG0961, KOG0961, Predicted Zn2+-dependent endopeptidase,
insulinase superfamily [Posttranslational modification,
protein turnover, chaperones].
Length = 1022
Score = 48.5 bits (115), Expect = 3e-06
Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 23/188 (12%)
Query: 37 ERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVG-GDINAYTSLEHTSYHAWVLKEH- 94
E + G+ H LEH++F G+ K K +++ I D NA+T +HT+Y
Sbjct: 51 EADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTLSTAGSDG 110
Query: 95 ----VPLALE-IIGDMLSNSSF-------NPSDIERERNVVLEEIGMSEDDSWDFLDARF 142
+P+ ++ I+ ML++ +F + VV E+ E + +D +
Sbjct: 111 FLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDA--GVVYSEMQDHESEMESIMDRKT 168
Query: 143 SEMVWKDQIIGRPIL----GKPETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCV 198
E+++ G+ + + T EKI + + Y M V+ G VDH+ +
Sbjct: 169 KEVIYP---PFSGYAVETGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLL 225
Query: 199 SQVESYFN 206
+ + N
Sbjct: 226 EIMNNVEN 233
>gnl|CDD|29802 cd00862, ProRS_anticodon_zinc, ProRS Prolyl-anticodon binding
domain, long version found predominantly in eukaryotes
and archaea. ProRS belongs to class II aminoacyl-tRNA
synthetases (aaRS). This alignment contains the
anticodon binding domain, which is responsible for
specificity in tRNA-binding, so that the activated amino
acid is transferred to a ribose 3' OH group of the
appropriate tRNA only, and an additional C-terminal
zinc-binding domain specific to this subfamily of
aaRSs..
Length = 202
Score = 31.4 bits (71), Expect = 0.48
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 294 NGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRA 353
+ I E + +VE V LL+ I++ ++ A I + A
Sbjct: 81 KNTVVIVRRDTGEKKTVPLAELVEKVPELLDEIQEDLYERALEFRDATRIVDTWEEFKEA 140
Query: 354 LEISKQVM--FCGSILCSEKIIDTISA 378
L V+ +CG C E+I + +A
Sbjct: 141 LNEKGIVLAPWCGEEECEEEIKEETAA 167
>gnl|CDD|33030 COG3217, COG3217, Uncharacterized Fe-S protein [General function
prediction only].
Length = 270
Score = 29.5 bits (66), Expect = 1.7
Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 3/70 (4%)
Query: 109 SSFNPSDIERERNVVLEEIGMSEDDSW--DFLDARFSEMVWKDQIIGRPILGKPETISSF 166
+ + +E + + + W FL R + W R + P +F
Sbjct: 81 ADAQRAPVEVWGDHFTADAAGDAANDWLSGFL-GRAVSLRWDGAGFARRVKAGPAVPVTF 139
Query: 167 TPEKIISFVS 176
I +
Sbjct: 140 ADGYPILLFN 149
>gnl|CDD|147160 pfam04858, TH1, TH1 protein. TH1 is a highly conserved but
uncharacterized metazoan protein. No homologue has been
identified in Caenorhabditis elegans. TH1 binds
specifically to A-Raf kinase.
Length = 582
Score = 27.9 bits (62), Expect = 5.4
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 56 TTKRTAKEIVEEIEKVGGDINAYT-SLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPS 114
R ++EI E K+ G T +L ++ P A + DMLS + NP+
Sbjct: 251 AAARLSQEIEEAAAKLHGAATVITLALATSAVD--------PQACYALADMLSRGALNPA 302
Query: 115 DI 116
DI
Sbjct: 303 DI 304
>gnl|CDD|34229 COG4591, LolE, ABC-type transport system, involved in lipoprotein
release, permease component [Cell envelope biogenesis,
outer membrane].
Length = 408
Score = 27.9 bits (62), Expect = 5.7
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 293 DNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLI-------KS 345
D + YI A+ N+ L +V ++ L++ E K +I +
Sbjct: 198 DESLAYIPLEDAQ-NLFNLPKGVVTGIRLKLKDPFNAEELKRKLEIELLPQGLKAKDWRE 256
Query: 346 QERSYLRALEISKQVMF 362
Q + AL + K +MF
Sbjct: 257 QNGEFFSALRLEKTIMF 273
>gnl|CDD|30097 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward..
Length = 334
Score = 27.6 bits (61), Expect = 6.6
Identities = 13/69 (18%), Positives = 28/69 (40%)
Query: 264 DGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLL 323
DG + +F + G ++++ E++ D G++ A + + V S L
Sbjct: 78 DGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYL 137
Query: 324 ENIEQREID 332
E ++ D
Sbjct: 138 EIYNEQLYD 146
>gnl|CDD|35926 KOG0707, KOG0707, KOG0707, Guanylate kinase [Nucleotide transport
and metabolism].
Length = 231
Score = 27.6 bits (61), Expect = 6.7
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 34 SRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVG 72
+ E F+E F G T+ V+ + G
Sbjct: 90 TTEEFLSMIKNNEFIEFATFSGNKYGTSIAAVQRLMLSG 128
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.133 0.379
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,979,036
Number of extensions: 266789
Number of successful extensions: 726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 710
Number of HSP's successfully gapped: 25
Length of query: 424
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 328
Effective length of database: 4,189,273
Effective search space: 1374081544
Effective search space used: 1374081544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)