RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780464|ref|YP_003064877.1| M16 family peptidase
[Candidatus Liberibacter asiaticus str. psy62]
(424 letters)
>3hdi_A Processing protease; CAGE structure, M16B peptidase,
metallopeptidase, peptidasome, protease, hydrolase;
2.70A {Bacillus halodurans c-125}
Length = 421
Score = 278 bits (711), Expect = 2e-75
Identities = 131/398 (32%), Positives = 225/398 (56%), Gaps = 3/398 (0%)
Query: 9 SSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEE 67
+G+ +ITE M + S + + + GSR E EE+G++HFLEHM FKGT R+A+EI E
Sbjct: 8 DNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEF 67
Query: 68 IEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEI 127
+ +GG +NA+TS E+T Y+A VL +H A++ + DM +S+F ++E+ER VV EEI
Sbjct: 68 FDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEI 127
Query: 128 GMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVV 187
M +D D + S + +G PILG ET++SF + ++ R YT D + +
Sbjct: 128 KMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVVIS 187
Query: 188 CVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLGFNGCAY 247
G V E E++ V + KP +++ ++K++ + H+ LG+ G
Sbjct: 188 VAGNVHDELIDKIKETFSQVKPTTYNYQGEKP-MFLPNRIVRKKETEQAHLCLGYPGLPI 246
Query: 248 QSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKEN 307
+D Y +L ++LG MSSRLFQ++REKRGLCYS+ ++H +F D+G+L I + T +
Sbjct: 247 GDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQ 306
Query: 308 IMALTSSIVEVVQSLLEN-IEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSI 366
+ L SI E +L E + ++E++ ++ L+ S E + R K +
Sbjct: 307 LDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKH 366
Query: 367 LCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAILGPP 404
+++I+ I+A+ +D+ +AK + S++P+++++
Sbjct: 367 RSLDEMIEQINAVQKQDVSRLAKILLSASPSISLINAN 404
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_A 1hr8_A* 1hr9_A*
Length = 475
Score = 273 bits (699), Expect = 4e-74
Identities = 88/424 (20%), Positives = 171/424 (40%), Gaps = 22/424 (5%)
Query: 2 NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61
N ++S ++G+ V T P + + + I AGSR E + G H L+ + FK T
Sbjct: 5 NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEG 64
Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121
+ + E +E +GG+ +S E+ Y A V + V L+++ + + +++ ++
Sbjct: 65 RAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKL 124
Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTA 181
EI L + + +G P++ I S + ++ + ++ YT
Sbjct: 125 SAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTP 184
Query: 182 DRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGE------YIQKRDLAE 235
+ VG V HE + Y + K A Y GGE +
Sbjct: 185 ENTVAAFVG-VPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL 243
Query: 236 EHMMLGFNGCAYQSRDFYLTNILASILGD-----------GMSSRLFQEVREKRGLCYSI 284
H+ +GF G D Y L ++LG GM SRL+ V + +
Sbjct: 244 FHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENC 303
Query: 285 SAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLEN----IEQREIDKECAKIHA 340
A + ++SD+G+ I+ + + I + + + N + + E+ + ++ +
Sbjct: 304 VAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKS 363
Query: 341 KLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAI 400
L+ + E + ++ +QV+ G + ++I I + +DI VA+ IF+ A
Sbjct: 364 SLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAG 423
Query: 401 LGPP 404
G
Sbjct: 424 NGKG 427
>1pp9_B Ubiquinol-cytochrome C reductase complex core protein 2,
mitochondrial; cytochrome BC1, membrane protein, heme
protein, rieske iron sulfur protein, cytochrome B; HET:
BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP:
d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B*
1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B*
1sqx_B* 2a06_B* 2fyu_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B*
3bcc_B* 1bcc_B* ...
Length = 439
Score = 264 bits (674), Expect = 4e-71
Identities = 82/422 (19%), Positives = 179/422 (42%), Gaps = 14/422 (3%)
Query: 2 NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61
+L ++ +G+ + + ++ + + I+AGSR E G +H L T ++
Sbjct: 23 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASS 82
Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121
+I IE VGG ++ ++ E+ +Y L++ V + +E + ++ + F ++ +
Sbjct: 83 FKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQP 142
Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTA 181
+ + ++ + + +++ + + I TP ++ +V ++T+
Sbjct: 143 QLRIDKAVALQNPQAHVIENLHAAAYRNA-LANSLYCPDYRIGKVTPVELHDYVQNHFTS 201
Query: 182 DRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLG 241
RM ++ +G V H E + N+ + S A Y GGE ++ + H L
Sbjct: 202 ARMALIGLG-VSHPVLKQVAEQFLNI--RGGLGLSGAKAKYHGGEIREQNGDSLVHAALV 258
Query: 242 FNGCAYQSRDFYLTNILASILGDG--------MSSRLFQEVREKRGLCYSISAHHENFSD 293
A S + ++L +LG G +S L+Q V + + +SA + ++SD
Sbjct: 259 AESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSD 318
Query: 294 NGVLYIASATAKENIMALTSSIVEVVQSLLEN-IEQREIDKECAKIHAKLIKSQERSYLR 352
+G+ + + + + + V+++ + + ++ K+ A + S E S
Sbjct: 319 SGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGF 378
Query: 353 ALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAILGPPMDHVPTTS 412
E+ Q + GS ++ I A+ D++ AKK S ++A G + H P
Sbjct: 379 LDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASG-NLGHTPFID 437
Query: 413 EL 414
EL
Sbjct: 438 EL 439
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A*
2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Length = 431
Score = 261 bits (667), Expect = 2e-70
Identities = 78/419 (18%), Positives = 165/419 (39%), Gaps = 27/419 (6%)
Query: 5 ISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKE 63
+++ S+GI V TE P +A V V +G+ NE +G+++ +++
Sbjct: 3 VTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENSAV--- 59
Query: 64 IVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSN---SSFNPSDIERER 120
K G +++ S + SY L +L+ + + + S+ E +
Sbjct: 60 ----AAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATK 115
Query: 121 NVVLEEIGMSEDD-SWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNY 179
VL+++ ED+ + + +++ + P G E++ + + SF + ++
Sbjct: 116 KSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHF 175
Query: 180 TADRMYVVCVGAVDHEFCVSQVESYF-NVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHM 238
VV G + HE V+ +ES ++ + K K A ++ L + +
Sbjct: 176 LNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAWI 235
Query: 239 MLGFNGCAYQSRDFYLTNILASILGDGMSS---------RLFQEVREKRGLCYSISAHHE 289
L G S ++++ + A I G + +L ++E LC + +
Sbjct: 236 SLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEY-QLCDNFNHFSL 294
Query: 290 NFSDNGVLYIASATAKEN-IMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQER 348
++ D+G+ ++AT I L ++ L ++ E+++ + + +L + E
Sbjct: 295 SYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYES 354
Query: 349 --SYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIF-SSTPTLAILGPP 404
A + +V+ GS L + I AIT +D+ A K +A G
Sbjct: 355 GNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQI 413
>1pp9_A Ubiquinol-cytochrome C reductase complex core protein I,
mitochondrial; cytochrome BC1, membrane protein, heme
protein, rieske iron sulfur protein, cytochrome B; HET:
BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP:
d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A*
1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A*
1sqx_A* 2a06_A* 2fyu_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A*
2bcc_A* 3bcc_A* ...
Length = 446
Score = 259 bits (662), Expect = 9e-70
Identities = 90/432 (20%), Positives = 188/432 (43%), Gaps = 14/432 (3%)
Query: 4 RISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKE 63
++S+ +G+ V +E + V V I AGSR E ++ +G +F+EH+ FKGT R
Sbjct: 15 QVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNA 74
Query: 64 IVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVV 123
+ +E+E +G +NAY++ EHT+Y+ L + +P A+E++ D++ N S S IE+ER+V+
Sbjct: 75 LEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVI 134
Query: 124 LEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADR 183
L+E+ ++ D + ++ + + + G E + + + ++SR+Y A R
Sbjct: 135 LQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPR 194
Query: 184 MYVVCVGAVDHEFCVSQVESYFN---VCSVAKIKESMKPAVYVGGEYIQKRD-LAEEHMM 239
M + G ++H + + +F+ ++ P + G + + D L H+
Sbjct: 195 MVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLAHVA 254
Query: 240 LGFNGCAYQSRDFYLTNILASILGD--------GMSSRLFQEVREKRGLCYSISAHHENF 291
+ G + D + +I+G S + LC S + +
Sbjct: 255 IAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICY 314
Query: 292 SDNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYL 351
+D G+L +I + + L + + E+ + + L+ + +
Sbjct: 315 ADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTP 374
Query: 352 RALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSST-PTLAILGPPMDHVPT 410
+I + ++ G + + I+ + + V K F P +A G P++ +P
Sbjct: 375 VCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFG-PIEQLPD 433
Query: 411 TSELIHALEGFR 422
+ + + R
Sbjct: 434 YNRIRSGMFWLR 445
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP:
d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Length = 939
Score = 240 bits (612), Expect = 5e-64
Identities = 77/424 (18%), Positives = 156/424 (36%), Gaps = 17/424 (4%)
Query: 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKR-TA 61
+ + +G+ V+ P + + + GS + + G+AH+LEHM G+ K A
Sbjct: 22 QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQA 81
Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121
+ E ++ GG NA T+ T+++ V + +P A++ + D ++ + ERERN
Sbjct: 82 DSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERN 141
Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISS----FTPEKIISFVSR 177
V E+ M+ + +E + + G ET+S + + F +
Sbjct: 142 AVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEK 201
Query: 178 NYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYV-----GGEYIQKRD 232
Y+A+ M V F + K+ V G
Sbjct: 202 YYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPA 261
Query: 233 LAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFS 292
L + + + F ++ T+ L + L S + +K+GL ISA+ +
Sbjct: 262 LPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIV 321
Query: 293 -DNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYL 351
N + SA+ + +A +V + S L + ++ IDK+ A ++ R
Sbjct: 322 NGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPS 381
Query: 352 RALEISKQVMFCGSIL--CSEKIIDTISAITC---EDIVGVAKKIFSSTPTLAILGPPMD 406
++ +++ E +D ++ + + + + + P
Sbjct: 382 ITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEP 441
Query: 407 HVPT 410
H T
Sbjct: 442 HNKT 445
Score = 91.6 bits (226), Expect = 3e-19
Identities = 36/357 (10%), Positives = 114/357 (31%), Gaps = 10/357 (2%)
Query: 51 MLFKGTTKRTAKEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSS 110
L ++ + G + + +A + +P + + + + +
Sbjct: 547 ALNDYLAGLALDQLSNQASVGGISFSTNAN-NGLMVNANGYTQRLPQLFQALLEGYFSYT 605
Query: 111 FNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEK 170
+E+ ++ + + +E ++M+ + + + + S T ++
Sbjct: 606 ATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPY--FSRDERRKILPSITLKE 663
Query: 171 IISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYV--GGEYI 228
++++ + R + +G + + + V V I
Sbjct: 664 VLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVI 723
Query: 229 QKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHH 288
++ L ++ ++ +S+LG + + ++R + L Y++ A
Sbjct: 724 FEKAGNSTDSALAAVFVPTGYDEYT-SSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFP 782
Query: 289 ENFSDNGVLYIASATAKENIMALTSSIVEVVQSL---LENIEQREIDKECAKIHAKLIKS 345
+ + + + L + L ++ E + + +++++
Sbjct: 783 MSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQA 842
Query: 346 QERSYLRALEISKQVMFCGSILCS-EKIIDTISAITCEDIVGVAKKIFSSTPTLAIL 401
+ A ++SK S +KI+ I +T + + + +AIL
Sbjct: 843 PQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAIL 899
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_B 1hr8_B* 1hr9_B*
Length = 443
Score = 234 bits (597), Expect = 3e-62
Identities = 125/431 (29%), Positives = 207/431 (48%), Gaps = 21/431 (4%)
Query: 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAK 62
R SK +G+T+ TE +P SA V + + AGSR E + +G AHFLEH+ FKGT R +
Sbjct: 8 RTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQ 67
Query: 63 EIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNV 122
I EIE +G +NAYTS E+T Y+A L+E +P A++I+ D+L+ S + S IERER+V
Sbjct: 68 GIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDV 127
Query: 123 VLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTAD 182
++ E + + + E+ +KDQ +GR ILG + I S T + ++++NY D
Sbjct: 128 IIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGD 187
Query: 183 RMYVVCVGAVDHEFCVSQVESYFN------VCSVAKIKESMKPAVYVGGEYIQKRDLAEE 236
RM + GAVDHE V + YF P G +I++ L
Sbjct: 188 RMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLPTT 247
Query: 237 HMMLGFNGCAYQSRDFYLTNILASI---------LGDGMSSRLFQEVREKRGLCYSISAH 287
H+ + G ++ + D+++ +I G S L + L S +
Sbjct: 248 HIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSF 307
Query: 288 HENFSDNGVLYIASATAKENIM---ALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIK 344
+++D+G+ + T + + E + I E+++ A++ A L+
Sbjct: 308 STSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLL 367
Query: 345 SQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTP-TLAILGP 403
S + S +I +QV+ G L E++ + + IT +DI+ A + P ++ LG
Sbjct: 368 SLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGN 427
Query: 404 PMDHVPTTSEL 414
VP S +
Sbjct: 428 T-STVPNVSYI 437
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading
enzyme, criptidase, kinins, hydrolase; 1.96A {Homo
sapiens} PDB: 2wby_A 2wc0_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A
2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A
Length = 990
Score = 229 bits (583), Expect = 1e-60
Identities = 65/369 (17%), Positives = 137/369 (37%), Gaps = 19/369 (5%)
Query: 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAK 62
R + ++GI V+ P D + +++ GS ++ G++HFL+HMLF GT K +
Sbjct: 36 RGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKE 95
Query: 63 -EIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121
E + + + G NA+TS EHT+Y+ V EH+ AL+ + F+ S +RE N
Sbjct: 96 NEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVN 155
Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSF-------TPEKIISF 174
V E + + L + G T+ + ++++ F
Sbjct: 156 AVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKF 215
Query: 175 VSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVC-----SVAKIKESMKPAVYVGGEYIQ 229
S Y+++ M VV +G + + V F+ + + E ++ Y
Sbjct: 216 HSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKI 275
Query: 230 KRDLAEEHMMLGFN-GCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHH 288
++ + F + + L ++G L E++ K + +
Sbjct: 276 VPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQK 335
Query: 289 ENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQER 348
I +E + + +++ + + I++ + + +L
Sbjct: 336 AGARGFMFFIINVDLTEEGL----LHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAV 391
Query: 349 SYLRALEIS 357
++ +
Sbjct: 392 AFRFKDKER 400
Score = 98.9 bits (245), Expect = 2e-21
Identities = 34/382 (8%), Positives = 116/382 (30%), Gaps = 20/382 (5%)
Query: 24 AFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSLEH 83
A + + MA L+ K + E E G + ++
Sbjct: 543 ANLNFEFFSPFAYVDPLHSNMA-----YLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 597
Query: 84 TSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFS 143
+ P+ L+ I + ++ + + E + + + + +
Sbjct: 598 MYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYL 657
Query: 144 EMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVES 203
++ + E ++ T ++ +F+ + + + + G + + + ++
Sbjct: 658 RLLMTEV--AWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQM 715
Query: 204 YFNVCSVAKIKESMKPAVYV---------GGEYIQKRDLAEEHMMLGFNGCAYQSRDFYL 254
+ + + P+ G ++ ++ + +
Sbjct: 716 VEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDMQSTSE 775
Query: 255 TNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVL--YIASATAKENIMALT 312
N+ + +S F +R K L Y + + + L I S + +
Sbjct: 776 -NMFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRV 834
Query: 313 SSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCS-EK 371
+ + ++ +E++ + K + + + ++ + + +++
Sbjct: 835 EAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNT 894
Query: 372 IIDTISAITCEDIVGVAKKIFS 393
+ + +T DI+ K++ +
Sbjct: 895 EVAYLKTLTKADIIKFYKEMLA 916
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B*
1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Length = 352
Score = 212 bits (541), Expect = 1e-55
Identities = 72/404 (17%), Positives = 135/404 (33%), Gaps = 53/404 (13%)
Query: 12 ITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKV 71
+TV P + + V + GSR ++ G+AH L F+ T R+A ++V E E +
Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRESELL 58
Query: 72 GGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSE 131
GG + E+ + A LK+ +P + + D+L ++F P ++
Sbjct: 59 GGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVA 118
Query: 132 DDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVVCVGA 191
+ + + +G P+L + + + + I F + YT + + V
Sbjct: 119 EQCPVKSAEDQLYAITFRKGLGNPLLY--DGVERVSLQDIKDFADKVYTKENLEVSGENV 176
Query: 192 VDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLGFNGCAYQSRD 251
V+ + ES + K S + GE + R + + +G
Sbjct: 177 VEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVRFIGDSVAAIGI---PVNKAS 233
Query: 252 FYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYI-ASATAKENIMA 310
+LA+ L +S E GL SA + F+D G+ + + +
Sbjct: 234 LAQYEVLANYLTSALS--------ELSGLIS--SAKLDKFTDGGLFTLFVRDQDSAVVSS 283
Query: 311 LTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSE 370
IV + + +++ A + KL E S
Sbjct: 284 NIKKIVA------DLKKGKDLSP--AINYTKL------KNAVQNESV-----------SS 318
Query: 371 KIIDTISAITCEDIVGVAKKIFSSTPTLAILGPPMDHVPTTSEL 414
I A K +G + ++P EL
Sbjct: 319 PIELNFDA---------VKDFKLGKFNYVAVG-DVSNLPYLDEL 352
>3d3y_A Uncharacterized protein; APC29635, conserved protein, structural
genomics, PSI-2, protein structure initiative; 1.95A
{Enterococcus faecalis V583}
Length = 425
Score = 211 bits (537), Expect = 3e-55
Identities = 63/419 (15%), Positives = 152/419 (36%), Gaps = 31/419 (7%)
Query: 2 NLRISKTSSGITVITEVMPIDSAF--VKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKR 59
N + G+ + V+P + V++ +R +R E L ++ +
Sbjct: 2 NAMSVQLVKGVNLH--VIP-TEKYKTVRLLVRFNTRLNH-ETITKRTLLSSLMETNSLNY 57
Query: 60 -TAKEIVEEIEK-VGGDINAYTSLEHTSY-----------HAWVLKEHVPLALEIIGDML 106
++ E + + G S + + H + + A++ + +++
Sbjct: 58 PNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEII 117
Query: 107 SNSS-----FNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVW-KDQIIGRPILGKP 160
+ F +RE+ + + +D + + + + + P G
Sbjct: 118 FAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTV 177
Query: 161 ETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFN--VCSVAKIKESMK 218
++ T + ++ + D++ + +G V+ V + +
Sbjct: 178 AALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQ 237
Query: 219 PAVYVGGEYIQKRDLAEEHMMLGFN-GCAYQSRDFYLTNILASILGDGMSSRLFQEVREK 277
P V E ++ LA+ + L +N Y ++ + I G S+LF VREK
Sbjct: 238 PIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREK 297
Query: 278 RGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLEN-IEQREIDKECA 336
L Y S+ + G + + + +N + I ++++ I + EI++ A
Sbjct: 298 EHLAYYASSS--IDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKA 355
Query: 337 KIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSST 395
+ + I + + + + + ++L +E+ I I+A+T +I VAK++
Sbjct: 356 MLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRLELQA 414
Score = 32.1 bits (72), Expect = 0.25
Identities = 19/176 (10%), Positives = 50/176 (28%), Gaps = 15/176 (8%)
Query: 236 EHMMLGFNGCA-YQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDN 294
+M Y ++ L+ LA + G + ++ + S++ ++++ +
Sbjct: 47 SSLM--ETNSLNYPNQVK-LSERLAELYGASFGIGVSKK-GNQHWFNISMNIVNDHYLQD 102
Query: 295 GVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRAL 354
+ + I+ E +E + A L E A
Sbjct: 103 SQVL-------AEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYAS 155
Query: 355 EISKQVMFCGSILCSEKII---DTISAITCEDIVGVAKKIFSSTPTLAILGPPMDH 407
+ V F S ++ T + +K+ + + ++
Sbjct: 156 LALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNE 211
>3go9_A Insulinase family protease; IDP00573, structural genomics, center
for structural genomics of infectious diseases, csgid,
hydrolase; HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 187 bits (474), Expect = 5e-48
Identities = 67/431 (15%), Positives = 144/431 (33%), Gaps = 36/431 (8%)
Query: 2 NLRISKTSSGITVI---TEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTK 58
+ K +G + T P D +++ + GS +E +E G AH L + +
Sbjct: 25 AWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSAS 84
Query: 59 RTAKEIVEEIEK----VGGDINAYTSLEHTSYHAWVLK---EHVPLALEIIGDMLSNSSF 111
T ++ ++ A TS + T Y + + + AL + D N +
Sbjct: 85 FTPAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAV 144
Query: 112 NPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKP---ETISSFTP 168
+ + N + I E W+ ++ G ++G
Sbjct: 145 SEQTVNAALNTATDPIATFPQ--------NIQEPWWRYRLKGSSLIGHDPGQPVTQPVDV 196
Query: 169 EKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVC---SVAKIKESMKPAVYVGG 225
EK+ F + YT D M + VG VD +Q+ F+ A + +
Sbjct: 197 EKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEP 256
Query: 226 EYIQKRDLAEEHMMLGFNGCAYQSRDFY--LTNILASILGDGMSSRLFQEVREKRGLCYS 283
+ A++ + L ++ + +D + + + + + Q + +
Sbjct: 257 VSLMNEQAAQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALFWHIKQVLEKNNQKNLK 316
Query: 284 ISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLEN-IEQREIDKECAKIHAKL 342
+ I T EN+ A + + + +L N + Q E D + + +L
Sbjct: 317 LGFDCRVQYQRAQCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQL 376
Query: 343 IK-----SQERSYLRALEISKQVMFCGSILCSEKIIDT----ISAITCEDIVGVAKKIFS 393
K ++ + + + + + E+ +S +T ++ K+ S
Sbjct: 377 SKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLS 436
Query: 394 STPTLAILGPP 404
TL ++ P
Sbjct: 437 QDTTLVLMQPK 447
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome,
protease-peptide complex, hydrolase, plant protein;
2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1
d.185.1.1 d.185.1.1
Length = 995
Score = 174 bits (440), Expect = 5e-44
Identities = 52/366 (14%), Positives = 116/366 (31%), Gaps = 39/366 (10%)
Query: 33 GSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEI--EKVGGDINAYTSLEHTSYHAWV 90
R ++ G+ H L+H + G+ K KE E+ + +NA+T + T Y
Sbjct: 64 VFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVAS 123
Query: 91 L-KEHVPLALEIIGDMLSNSSF-----------------NPSDIERERNVVLEEIGMSED 132
+ +++ D + +PS+ + VV E+
Sbjct: 124 TNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYS 183
Query: 133 DSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVVCVGAV 192
+ L + + + G G P+ I + T E+ F + Y + G
Sbjct: 184 QPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDD 243
Query: 193 DHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEH--------------- 237
D + + Y + + + + L E++
Sbjct: 244 DPVHRLRVLSEYLD--MFEASPSPNSSKIKFQKLFSEPVRLVEKYPAGRDGDLKKKHMLC 301
Query: 238 MMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVL 297
+ + + L ++ +S L + + E +S+ +
Sbjct: 302 VNWLLSEKPLDLQTQLALGFLDHLMLGTPASPLRKILLESGLGEALVSSGLSDELLQPQF 361
Query: 298 YI-ASATAKENIMALTSSIVEVVQSLLEN-IEQREIDKECAKIHAKLIKSQERSYLRALE 355
I ++EN+ + I++ ++ L E + ++ I L ++ S+ R L
Sbjct: 362 GIGLKGVSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLS 421
Query: 356 ISKQVM 361
+ Q +
Sbjct: 422 LMLQSI 427
Score = 96.3 bits (238), Expect = 1e-20
Identities = 40/389 (10%), Positives = 103/389 (26%), Gaps = 39/389 (10%)
Query: 42 HGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTS----------LEHTSYHAWVL 91
+ F + +L GT T ++ + I + G I+ Y +
Sbjct: 592 PLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSM 651
Query: 92 KEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDD--------SWDFLDARFS 143
++ +L F D +R + V + E+ + +DA +
Sbjct: 652 AGRADDLFNLMNCLLQEVQFT--DQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLN 709
Query: 144 EMVW-KDQIIGRPILGKPETISSFTP-------EKIISFVSRNYTADRMYVVCVGAVDH- 194
W +Q+ G L T+ + + V
Sbjct: 710 IAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNGCIVNMTADGKSL 769
Query: 195 EFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQ-KRDLAEEHMMLGFNGCAYQSRDFY 253
V + ++ + + ++ N +
Sbjct: 770 TNVEKSVAKFLDLLPENPSGGLVTWDGRLPLRNEAIVIPTQVNYVGKAGNIYSTGYELDG 829
Query: 254 LTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTS 313
+++ + ++ L+ VR G Y ++ S + +
Sbjct: 830 SAYVISKHIS---NTWLWDRVRVS-GGAYGGFCDFDSHSGVFSYLSYRDPNLLKTLDIYD 885
Query: 314 SIVEVVQSLLENIEQREIDKECAKIHA-KLIKSQERSYLRALEISKQVMFCGSILCSEKI 372
+ ++ +++Q + K A I + S + + + + + ++
Sbjct: 886 GTGDFLRG--LDVDQETLTK--AIIGTIGDVDSYQLPDAKGYSSLLRHLLGVTDEERQRK 941
Query: 373 IDTISAITCEDIVGVAKKIFSSTPTLAIL 401
+ I + +D A+ I +
Sbjct: 942 REEILTTSLKDFKDFAQAIDVVRDKGVAV 970
>3eoq_A Putative zinc protease; two similar domains of
beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure,
hydrolase; 2.29A {Thermus thermophilus}
Length = 406
Score = 166 bits (419), Expect = 1e-41
Identities = 89/402 (22%), Positives = 169/402 (42%), Gaps = 3/402 (0%)
Query: 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAK 62
R ++ +G+ VI EV+P S + ++ G+R+E +EE G++HFLEHM+FKG A
Sbjct: 3 REAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDAL 62
Query: 63 EIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNV 122
+ +++G NA+TS E T Y+ VL E L + + + D + E+ V
Sbjct: 63 AVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAKL-LRPALREEDFQTEKLV 121
Query: 123 VLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTAD 182
+LEEI +D ++ +G +LG E+I++ T E + ++ R Y
Sbjct: 122 ILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITALTREGMAAYHRRRYLPK 181
Query: 183 RMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYV-GGEYIQKRDLAEEHMMLG 241
M + G VD + +++ E + + + P G E +++
Sbjct: 182 NMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEKARALYLVAL 241
Query: 242 FNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIAS 301
F G AYQ + +LA +LG+ S RL + +K + E
Sbjct: 242 FPGVAYQEEARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQ 301
Query: 302 ATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVM 361
A L E+ + E + + E+++ + L+ + E R + + +
Sbjct: 302 ADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYL 361
Query: 362 FCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAILGP 403
+ G L E++ + +T ++ + ++ F ++ P
Sbjct: 362 YTGRYLSLEEVKARVQRVTSREVNALLERGFLEKGLYYLVLP 403
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family,
PFL_5859, structural genomics, PSI-2; 1.90A {Pseudomonas
fluorescens pf-5}
Length = 434
Score = 155 bits (391), Expect = 2e-38
Identities = 69/416 (16%), Positives = 145/416 (34%), Gaps = 8/416 (1%)
Query: 1 MNLRISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKR 59
+N++ T+ G V+ + +++ AGS + G+A ML +G +
Sbjct: 12 LNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGK 70
Query: 60 TAKEIVEEIEKVGGDINAYTSLEH--TSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIE 117
I + E +G D + S + + AL++ +++ +F +
Sbjct: 71 DVGAIAQGFEGLGADFGNGAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLA 130
Query: 118 RERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSR 177
R +N +L + + + ++ G ++I T ++ +F ++
Sbjct: 131 RIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQLKAFHAK 190
Query: 178 NYTADRMYVVCVGAVDHEFCVSQV-ESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEE 236
Y A + + VG + + + + + + +PA + ++
Sbjct: 191 AYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPSSQT 250
Query: 237 HMMLGFNGCAYQSRDFYLTNILASI-LGDGMSSRLFQEVREKRGLCYSISAHHENFSDNG 295
+ML G D+ ++ I G G +RL EVREKRGL Y + + G
Sbjct: 251 SLMLAQLGIDRDDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARG 310
Query: 296 VLYIASATAKENIMALTSSIVEVVQSLLEN-IEQREIDKECAKIHAKLIKSQERSYLRAL 354
I T E + +V L+N Q+E+D ++ S +
Sbjct: 311 PFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVG 370
Query: 355 EISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFS-STPTLAILGPPMDHVP 409
++ + + E + +T E + K + + GP + P
Sbjct: 371 QLGAMGFYNLPLSYLEDFMRQSQELTVEQVKAAMNKHLNVDKMVIVSAGPTVAQKP 426
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, structural
genomics, PSI-2, protein structure initiative; 2.15A
{Bordetella pertussis}
Length = 197
Score = 80.7 bits (198), Expect = 6e-16
Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 5/177 (2%)
Query: 230 KRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHE 289
+R + ++ A S DF ++ A+IL D SSRL+ + L +
Sbjct: 19 RRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSSRLYHALVPT-KLASGVFGFTM 77
Query: 290 NFSDNGVLYIASATAKENIM--ALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQE 347
+ D G+ + AL + + + Q E+++ +K ++
Sbjct: 78 DQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYA 137
Query: 348 RSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFS-STPTLAILGP 403
+ +S+ + G D + +D+ A S T P
Sbjct: 138 DPEKVGVALSEA-IASGDWRLFFLQRDRVREAKLDDVQRAAVAYLVRSNRTEGRYIP 193
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 50.7 bits (121), Expect = 6e-07
Identities = 80/504 (15%), Positives = 138/504 (27%), Gaps = 224/504 (44%)
Query: 13 TVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKV- 71
T + + + ++ I A +++ LF+ + A+ + +
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSA--------LFRAVGEGNAQ-----LVAIF 160
Query: 72 -G-GDINAYTSLE-----HTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVL 124
G G+ + Y E + +YH V L ++ + LS D E+
Sbjct: 161 GGQGNTDDY--FEELRDLYQTYHVLV----GDL-IKFSAETLSELIRTTLDAEKVFTQ-- 211
Query: 125 EEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPET-------IS---SFTPEKIISF 174
G+ + L+ W L P +S S P +I
Sbjct: 212 ---GL------NILE-------W---------LENPSNTPDKDYLLSIPISC-P--LIGV 243
Query: 175 VS-RNYTADRMYVVC--------------VGAVDHEFCVSQ--V-----------ESYFN 206
+ +Y V GA H SQ V ES+F
Sbjct: 244 IQLAHY-----VVTAKLLGFTPGELRSYLKGATGH----SQGLVTAVAIAETDSWESFF- 293
Query: 207 VCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASIL---- 262
S++ A+ +L F G + T++ SIL
Sbjct: 294 --------VSVRKAI----T------------VLFFIGVRCY-EAYPNTSLPPSILEDSL 328
Query: 263 --GDG----MSSRLFQEVREKRGLCYSISAHHENFSD--NGVL------YIASATAKENI 308
+G M S + L + + + + N L I+ +N+
Sbjct: 329 ENNEGVPSPMLS-----I---SNL--TQEQVQD-YVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 309 MALTSSIVEVV----QSL------LENIE-QREIDKECAKIHA---KLIKSQER------ 348
VV QSL L + +D+ ++I KL K R
Sbjct: 378 ---------VVSGPPQSLYGLNLTLRKAKAPSGLDQ--SRIPFSERKL-KFSNRFLPVAS 425
Query: 349 ----SYLR-ALEISKQ------VMFCGSIL---------------CSEKIIDT-ISAITC 381
L A ++ + V F + S I + + I
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 382 EDIVGVAKKIFSSTPTLAIL--GP 403
+ F +T IL GP
Sbjct: 486 LPVKWETTTQFKAT---HILDFGP 506
Score = 40.3 bits (94), Expect = 9e-04
Identities = 35/281 (12%), Positives = 77/281 (27%), Gaps = 109/281 (38%)
Query: 157 LGKPETISSFTPEKIISFVSRNYTADRM-------YVVCVGAVDHEFCVSQVESYF---- 205
+ ++ E + F+ Y + + + + EF E+ +
Sbjct: 48 FAADDEPTT-PAELVGKFL--GYVSSLVEPSKVGQFDQVLNLCLTEF-----ENCYLEGN 99
Query: 206 NVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASIL--- 262
++ ++A + ++ ++L + + R F S L
Sbjct: 100 DIHALAA---KLLQEN--DTTLVKTKELIKNY----ITARIMAKRPF--DKKSNSALFRA 148
Query: 263 -------------GDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIM 309
G G + F+E+R+ LY T +
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRD--------------------LY---QTYHVLVG 185
Query: 310 ALTSSIVEVVQSLLENIEQREIDKECAKIHAK---LIK------SQ-ERSYLRALEISKQ 359
L E + L+ E K+ + +++ + ++ YL +S
Sbjct: 186 DLIKFSAETLSELIRTTLDAE------KVFTQGLNILEWLENPSNTPDKDYL----LSIP 235
Query: 360 VMFCGSILCSEKIIDTIS----AITCEDIVGVAKKIFSSTP 396
+ S +I I +T K+ TP
Sbjct: 236 I--------SCPLIGVIQLAHYVVTA--------KLLGFTP 260
Score = 38.4 bits (89), Expect = 0.003
Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 44/183 (24%)
Query: 246 AYQSRDFYLT--NILASILGDGMSSRLF---QEVREKRGLCYSISAHHENFSDNGVLYIA 300
AY +R L+ ++ +L + + F +++E+ + ++
Sbjct: 3 AYSTRPLTLSHGSLEHVLL---VPTASFFIASQLQEQ------FNKILPEPTEG------ 47
Query: 301 SATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKL---IKSQERSYLRALEIS 357
A E ++ E+V L + + + L + E YL +I
Sbjct: 48 FAADDE-----PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 358 KQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSS-TPTLAILGPPMDHVPTTSELIH 416
+L T+ K++ + + P D S L
Sbjct: 103 ---ALAAKLLQENDT--TLVK---------TKELIKNYITARIMAKRPFDKKS-NSALFR 147
Query: 417 ALE 419
A+
Sbjct: 148 AVG 150
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.6 bits (74), Expect = 0.17
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 16/57 (28%)
Query: 323 LENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILC----SEKIIDT 375
N+ EC K+++ + C C S+K++DT
Sbjct: 15 GPNLNIVLTCPECKVYPPKIVERFSEGD----------VVCAL--CGLVLSDKLVDT 59
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.54
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 33/56 (58%)
Query: 347 ERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFS--STPTLAI 400
E+ L+ L+ S L K+++ S P LAI
Sbjct: 18 EKQALKKLQAS---------L----------------------KLYADDSAPALAI 42
>1nj1_A Proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase; HET: 5CA; 2.55A
{Methanothermobacterthermautotrophicus} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 30.8 bits (69), Expect = 0.56
Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 8/128 (6%)
Query: 276 EKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDK-- 333
E RG+ + + + T ++ L I E ++ L+++I + +
Sbjct: 366 EMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADL-QGIEETLRELMKDILENLRTRAW 424
Query: 334 ECAKIHAKLIKSQERSYLRALEISK---QVMFCGSILCSEKIIDTISA-ITCEDIVGVAK 389
E + + ++ E R ++ + M+CG C + + + I G
Sbjct: 425 ERMESEIREAETLE-EASRIVDEKRGIISFMWCGEEECGMDVEEKVRVDILGIQEEGSGT 483
Query: 390 KIFSSTPT 397
I
Sbjct: 484 CINCGREA 491
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 29.0 bits (64), Expect = 2.0
Identities = 7/48 (14%), Positives = 14/48 (29%)
Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNS 109
+ V D+ T L V AL++ + ++
Sbjct: 190 YDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase,
signal peptide processing, protein translocation,
membrane bound proteinase; HET: 1PN; 1.95A {Escherichia
coli} SCOP: b.87.1.2 PDB: 1t7d_A* 1kn9_A
Length = 248
Score = 28.4 bits (62), Expect = 2.8
Identities = 13/66 (19%), Positives = 23/66 (34%)
Query: 92 KEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQI 151
H L + I D + P V + M D+ + D+R+ V + +
Sbjct: 158 VTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANL 217
Query: 152 IGRPIL 157
+GR
Sbjct: 218 VGRATA 223
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 28.0 bits (61), Expect = 4.0
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLA--LEIIGDMLSNSSFNPSDIERE 119
+IV + K G N +S T ++ + L+++ D S +
Sbjct: 357 TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF 416
Query: 120 RNVVLEEIGMSEDDSWDFLD 139
V E + +SED+ + +
Sbjct: 417 PETVDEILDVSEDEGEELIS 436
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase;
2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A
1yyf_D*
Length = 180
Score = 26.9 bits (59), Expect = 9.7
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 47 FLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYT 79
+ +A EI + G+I YT
Sbjct: 138 AGRALKKHAGESMSASEIARAALETAGEICVYT 170
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 26.6 bits (58), Expect = 9.8
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 123 VLEEIGMSEDDSWDFLDAR 141
+ G++ D + + R
Sbjct: 396 AYKANGLNPDPYYWYTQQR 414
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.133 0.379
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,601,678
Number of extensions: 171177
Number of successful extensions: 645
Number of sequences better than 10.0: 1
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 39
Length of query: 424
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 329
Effective length of database: 3,390,050
Effective search space: 1115326450
Effective search space used: 1115326450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)