RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780464|ref|YP_003064877.1| M16 family peptidase [Candidatus Liberibacter asiaticus str. psy62] (424 letters) >3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Score = 278 bits (711), Expect = 2e-75 Identities = 131/398 (32%), Positives = 225/398 (56%), Gaps = 3/398 (0%) Query: 9 SSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEE 67 +G+ +ITE M + S + + + GSR E EE+G++HFLEHM FKGT R+A+EI E Sbjct: 8 DNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEF 67 Query: 68 IEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEI 127 + +GG +NA+TS E+T Y+A VL +H A++ + DM +S+F ++E+ER VV EEI Sbjct: 68 FDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEI 127 Query: 128 GMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVV 187 M +D D + S + +G PILG ET++SF + ++ R YT D + + Sbjct: 128 KMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVVIS 187 Query: 188 CVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLGFNGCAY 247 G V E E++ V + KP +++ ++K++ + H+ LG+ G Sbjct: 188 VAGNVHDELIDKIKETFSQVKPTTYNYQGEKP-MFLPNRIVRKKETEQAHLCLGYPGLPI 246 Query: 248 QSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKEN 307 +D Y +L ++LG MSSRLFQ++REKRGLCYS+ ++H +F D+G+L I + T + Sbjct: 247 GDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQ 306 Query: 308 IMALTSSIVEVVQSLLEN-IEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSI 366 + L SI E +L E + ++E++ ++ L+ S E + R K + Sbjct: 307 LDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKH 366 Query: 367 LCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAILGPP 404 +++I+ I+A+ +D+ +AK + S++P+++++ Sbjct: 367 RSLDEMIEQINAVQKQDVSRLAKILLSASPSISLINAN 404 >1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Score = 273 bits (699), Expect = 4e-74 Identities = 88/424 (20%), Positives = 171/424 (40%), Gaps = 22/424 (5%) Query: 2 NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61 N ++S ++G+ V T P + + + I AGSR E + G H L+ + FK T Sbjct: 5 NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEG 64 Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121 + + E +E +GG+ +S E+ Y A V + V L+++ + + +++ ++ Sbjct: 65 RAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKL 124 Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTA 181 EI L + + +G P++ I S + ++ + ++ YT Sbjct: 125 SAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTP 184 Query: 182 DRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGE------YIQKRDLAE 235 + VG V HE + Y + K A Y GGE + Sbjct: 185 ENTVAAFVG-VPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL 243 Query: 236 EHMMLGFNGCAYQSRDFYLTNILASILGD-----------GMSSRLFQEVREKRGLCYSI 284 H+ +GF G D Y L ++LG GM SRL+ V + + Sbjct: 244 FHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENC 303 Query: 285 SAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLEN----IEQREIDKECAKIHA 340 A + ++SD+G+ I+ + + I + + + N + + E+ + ++ + Sbjct: 304 VAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKS 363 Query: 341 KLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAI 400 L+ + E + ++ +QV+ G + ++I I + +DI VA+ IF+ A Sbjct: 364 SLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAG 423 Query: 401 LGPP 404 G Sbjct: 424 NGKG 427 >1pp9_B Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* 1bcc_B* ... Length = 439 Score = 264 bits (674), Expect = 4e-71 Identities = 82/422 (19%), Positives = 179/422 (42%), Gaps = 14/422 (3%) Query: 2 NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61 +L ++ +G+ + + ++ + + I+AGSR E G +H L T ++ Sbjct: 23 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASS 82 Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121 +I IE VGG ++ ++ E+ +Y L++ V + +E + ++ + F ++ + Sbjct: 83 FKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQP 142 Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTA 181 + + ++ + + +++ + + I TP ++ +V ++T+ Sbjct: 143 QLRIDKAVALQNPQAHVIENLHAAAYRNA-LANSLYCPDYRIGKVTPVELHDYVQNHFTS 201 Query: 182 DRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLG 241 RM ++ +G V H E + N+ + S A Y GGE ++ + H L Sbjct: 202 ARMALIGLG-VSHPVLKQVAEQFLNI--RGGLGLSGAKAKYHGGEIREQNGDSLVHAALV 258 Query: 242 FNGCAYQSRDFYLTNILASILGDG--------MSSRLFQEVREKRGLCYSISAHHENFSD 293 A S + ++L +LG G +S L+Q V + + +SA + ++SD Sbjct: 259 AESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSD 318 Query: 294 NGVLYIASATAKENIMALTSSIVEVVQSLLEN-IEQREIDKECAKIHAKLIKSQERSYLR 352 +G+ + + + + + V+++ + + ++ K+ A + S E S Sbjct: 319 SGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGF 378 Query: 353 ALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAILGPPMDHVPTTS 412 E+ Q + GS ++ I A+ D++ AKK S ++A G + H P Sbjct: 379 LDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASG-NLGHTPFID 437 Query: 413 EL 414 EL Sbjct: 438 EL 439 >3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Score = 261 bits (667), Expect = 2e-70 Identities = 78/419 (18%), Positives = 165/419 (39%), Gaps = 27/419 (6%) Query: 5 ISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKE 63 +++ S+GI V TE P +A V V +G+ NE +G+++ +++ Sbjct: 3 VTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENSAV--- 59 Query: 64 IVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSN---SSFNPSDIERER 120 K G +++ S + SY L +L+ + + + S+ E + Sbjct: 60 ----AAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATK 115 Query: 121 NVVLEEIGMSEDD-SWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNY 179 VL+++ ED+ + + +++ + P G E++ + + SF + ++ Sbjct: 116 KSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHF 175 Query: 180 TADRMYVVCVGAVDHEFCVSQVESYF-NVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHM 238 VV G + HE V+ +ES ++ + K K A ++ L + + Sbjct: 176 LNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAWI 235 Query: 239 MLGFNGCAYQSRDFYLTNILASILGDGMSS---------RLFQEVREKRGLCYSISAHHE 289 L G S ++++ + A I G + +L ++E LC + + Sbjct: 236 SLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEY-QLCDNFNHFSL 294 Query: 290 NFSDNGVLYIASATAKEN-IMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQER 348 ++ D+G+ ++AT I L ++ L ++ E+++ + + +L + E Sbjct: 295 SYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYES 354 Query: 349 --SYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIF-SSTPTLAILGPP 404 A + +V+ GS L + I AIT +D+ A K +A G Sbjct: 355 GNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQI 413 >1pp9_A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* 3bcc_A* ... Length = 446 Score = 259 bits (662), Expect = 9e-70 Identities = 90/432 (20%), Positives = 188/432 (43%), Gaps = 14/432 (3%) Query: 4 RISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKE 63 ++S+ +G+ V +E + V V I AGSR E ++ +G +F+EH+ FKGT R Sbjct: 15 QVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNA 74 Query: 64 IVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVV 123 + +E+E +G +NAY++ EHT+Y+ L + +P A+E++ D++ N S S IE+ER+V+ Sbjct: 75 LEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVI 134 Query: 124 LEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADR 183 L+E+ ++ D + ++ + + + G E + + + ++SR+Y A R Sbjct: 135 LQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPR 194 Query: 184 MYVVCVGAVDHEFCVSQVESYFN---VCSVAKIKESMKPAVYVGGEYIQKRD-LAEEHMM 239 M + G ++H + + +F+ ++ P + G + + D L H+ Sbjct: 195 MVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLAHVA 254 Query: 240 LGFNGCAYQSRDFYLTNILASILGD--------GMSSRLFQEVREKRGLCYSISAHHENF 291 + G + D + +I+G S + LC S + + Sbjct: 255 IAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICY 314 Query: 292 SDNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYL 351 +D G+L +I + + L + + E+ + + L+ + + Sbjct: 315 ADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTP 374 Query: 352 RALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSST-PTLAILGPPMDHVPT 410 +I + ++ G + + I+ + + V K F P +A G P++ +P Sbjct: 375 VCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFG-PIEQLPD 433 Query: 411 TSELIHALEGFR 422 + + + R Sbjct: 434 YNRIRSGMFWLR 445 >1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Score = 240 bits (612), Expect = 5e-64 Identities = 77/424 (18%), Positives = 156/424 (36%), Gaps = 17/424 (4%) Query: 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKR-TA 61 + + +G+ V+ P + + + GS + + G+AH+LEHM G+ K A Sbjct: 22 QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQA 81 Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121 + E ++ GG NA T+ T+++ V + +P A++ + D ++ + ERERN Sbjct: 82 DSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERN 141 Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISS----FTPEKIISFVSR 177 V E+ M+ + +E + + G ET+S + + F + Sbjct: 142 AVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEK 201 Query: 178 NYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYV-----GGEYIQKRD 232 Y+A+ M V F + K+ V G Sbjct: 202 YYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPA 261 Query: 233 LAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFS 292 L + + + F ++ T+ L + L S + +K+GL ISA+ + Sbjct: 262 LPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIV 321 Query: 293 -DNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYL 351 N + SA+ + +A +V + S L + ++ IDK+ A ++ R Sbjct: 322 NGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPS 381 Query: 352 RALEISKQVMFCGSIL--CSEKIIDTISAITC---EDIVGVAKKIFSSTPTLAILGPPMD 406 ++ +++ E +D ++ + + + + + P Sbjct: 382 ITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEP 441 Query: 407 HVPT 410 H T Sbjct: 442 HNKT 445 Score = 91.6 bits (226), Expect = 3e-19 Identities = 36/357 (10%), Positives = 114/357 (31%), Gaps = 10/357 (2%) Query: 51 MLFKGTTKRTAKEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSS 110 L ++ + G + + +A + +P + + + + + Sbjct: 547 ALNDYLAGLALDQLSNQASVGGISFSTNAN-NGLMVNANGYTQRLPQLFQALLEGYFSYT 605 Query: 111 FNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEK 170 +E+ ++ + + +E ++M+ + + + + S T ++ Sbjct: 606 ATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPY--FSRDERRKILPSITLKE 663 Query: 171 IISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYV--GGEYI 228 ++++ + R + +G + + + V V I Sbjct: 664 VLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVI 723 Query: 229 QKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHH 288 ++ L ++ ++ +S+LG + + ++R + L Y++ A Sbjct: 724 FEKAGNSTDSALAAVFVPTGYDEYT-SSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFP 782 Query: 289 ENFSDNGVLYIASATAKENIMALTSSIVEVVQSL---LENIEQREIDKECAKIHAKLIKS 345 + + + + L + L ++ E + + +++++ Sbjct: 783 MSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQA 842 Query: 346 QERSYLRALEISKQVMFCGSILCS-EKIIDTISAITCEDIVGVAKKIFSSTPTLAIL 401 + A ++SK S +KI+ I +T + + + +AIL Sbjct: 843 PQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAIL 899 >1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Score = 234 bits (597), Expect = 3e-62 Identities = 125/431 (29%), Positives = 207/431 (48%), Gaps = 21/431 (4%) Query: 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAK 62 R SK +G+T+ TE +P SA V + + AGSR E + +G AHFLEH+ FKGT R + Sbjct: 8 RTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQ 67 Query: 63 EIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNV 122 I EIE +G +NAYTS E+T Y+A L+E +P A++I+ D+L+ S + S IERER+V Sbjct: 68 GIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDV 127 Query: 123 VLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTAD 182 ++ E + + + E+ +KDQ +GR ILG + I S T + ++++NY D Sbjct: 128 IIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGD 187 Query: 183 RMYVVCVGAVDHEFCVSQVESYFN------VCSVAKIKESMKPAVYVGGEYIQKRDLAEE 236 RM + GAVDHE V + YF P G +I++ L Sbjct: 188 RMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLPTT 247 Query: 237 HMMLGFNGCAYQSRDFYLTNILASI---------LGDGMSSRLFQEVREKRGLCYSISAH 287 H+ + G ++ + D+++ +I G S L + L S + Sbjct: 248 HIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSF 307 Query: 288 HENFSDNGVLYIASATAKENIM---ALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIK 344 +++D+G+ + T + + E + I E+++ A++ A L+ Sbjct: 308 STSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLL 367 Query: 345 SQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTP-TLAILGP 403 S + S +I +QV+ G L E++ + + IT +DI+ A + P ++ LG Sbjct: 368 SLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGN 427 Query: 404 PMDHVPTTSEL 414 VP S + Sbjct: 428 T-STVPNVSYI 437 >3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 2wby_A 2wc0_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A Length = 990 Score = 229 bits (583), Expect = 1e-60 Identities = 65/369 (17%), Positives = 137/369 (37%), Gaps = 19/369 (5%) Query: 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAK 62 R + ++GI V+ P D + +++ GS ++ G++HFL+HMLF GT K + Sbjct: 36 RGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKE 95 Query: 63 -EIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121 E + + + G NA+TS EHT+Y+ V EH+ AL+ + F+ S +RE N Sbjct: 96 NEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVN 155 Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSF-------TPEKIISF 174 V E + + L + G T+ + ++++ F Sbjct: 156 AVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKF 215 Query: 175 VSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVC-----SVAKIKESMKPAVYVGGEYIQ 229 S Y+++ M VV +G + + V F+ + + E ++ Y Sbjct: 216 HSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKI 275 Query: 230 KRDLAEEHMMLGFN-GCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHH 288 ++ + F + + L ++G L E++ K + + Sbjct: 276 VPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQK 335 Query: 289 ENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQER 348 I +E + + +++ + + I++ + + +L Sbjct: 336 AGARGFMFFIINVDLTEEGL----LHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAV 391 Query: 349 SYLRALEIS 357 ++ + Sbjct: 392 AFRFKDKER 400 Score = 98.9 bits (245), Expect = 2e-21 Identities = 34/382 (8%), Positives = 116/382 (30%), Gaps = 20/382 (5%) Query: 24 AFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSLEH 83 A + + MA L+ K + E E G + ++ Sbjct: 543 ANLNFEFFSPFAYVDPLHSNMA-----YLYLELLKDSLNEYAYAAELAGLSYDLQNTIYG 597 Query: 84 TSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFS 143 + P+ L+ I + ++ + + E + + + + + Sbjct: 598 MYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYL 657 Query: 144 EMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVES 203 ++ + E ++ T ++ +F+ + + + + G + + + ++ Sbjct: 658 RLLMTEV--AWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQM 715 Query: 204 YFNVCSVAKIKESMKPAVYV---------GGEYIQKRDLAEEHMMLGFNGCAYQSRDFYL 254 + + + P+ G ++ ++ + + Sbjct: 716 VEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDMQSTSE 775 Query: 255 TNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVL--YIASATAKENIMALT 312 N+ + +S F +R K L Y + + + L I S + + Sbjct: 776 -NMFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRV 834 Query: 313 SSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCS-EK 371 + + ++ +E++ + K + + + ++ + + +++ Sbjct: 835 EAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNT 894 Query: 372 IIDTISAITCEDIVGVAKKIFS 393 + + +T DI+ K++ + Sbjct: 895 EVAYLKTLTKADIIKFYKEMLA 916 >3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Score = 212 bits (541), Expect = 1e-55 Identities = 72/404 (17%), Positives = 135/404 (33%), Gaps = 53/404 (13%) Query: 12 ITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKV 71 +TV P + + V + GSR ++ G+AH L F+ T R+A ++V E E + Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRESELL 58 Query: 72 GGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSE 131 GG + E+ + A LK+ +P + + D+L ++F P ++ Sbjct: 59 GGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVA 118 Query: 132 DDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVVCVGA 191 + + + +G P+L + + + + I F + YT + + V Sbjct: 119 EQCPVKSAEDQLYAITFRKGLGNPLLY--DGVERVSLQDIKDFADKVYTKENLEVSGENV 176 Query: 192 VDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLGFNGCAYQSRD 251 V+ + ES + K S + GE + R + + +G Sbjct: 177 VEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVRFIGDSVAAIGI---PVNKAS 233 Query: 252 FYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYI-ASATAKENIMA 310 +LA+ L +S E GL SA + F+D G+ + + + Sbjct: 234 LAQYEVLANYLTSALS--------ELSGLIS--SAKLDKFTDGGLFTLFVRDQDSAVVSS 283 Query: 311 LTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSE 370 IV + + +++ A + KL E S Sbjct: 284 NIKKIVA------DLKKGKDLSP--AINYTKL------KNAVQNESV-----------SS 318 Query: 371 KIIDTISAITCEDIVGVAKKIFSSTPTLAILGPPMDHVPTTSEL 414 I A K +G + ++P EL Sbjct: 319 PIELNFDA---------VKDFKLGKFNYVAVG-DVSNLPYLDEL 352 >3d3y_A Uncharacterized protein; APC29635, conserved protein, structural genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis V583} Length = 425 Score = 211 bits (537), Expect = 3e-55 Identities = 63/419 (15%), Positives = 152/419 (36%), Gaps = 31/419 (7%) Query: 2 NLRISKTSSGITVITEVMPIDSAF--VKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKR 59 N + G+ + V+P + V++ +R +R E L ++ + Sbjct: 2 NAMSVQLVKGVNLH--VIP-TEKYKTVRLLVRFNTRLNH-ETITKRTLLSSLMETNSLNY 57 Query: 60 -TAKEIVEEIEK-VGGDINAYTSLEHTSY-----------HAWVLKEHVPLALEIIGDML 106 ++ E + + G S + + H + + A++ + +++ Sbjct: 58 PNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEII 117 Query: 107 SNSS-----FNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVW-KDQIIGRPILGKP 160 + F +RE+ + + +D + + + + + P G Sbjct: 118 FAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTV 177 Query: 161 ETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFN--VCSVAKIKESMK 218 ++ T + ++ + D++ + +G V+ V + + Sbjct: 178 AALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQ 237 Query: 219 PAVYVGGEYIQKRDLAEEHMMLGFN-GCAYQSRDFYLTNILASILGDGMSSRLFQEVREK 277 P V E ++ LA+ + L +N Y ++ + I G S+LF VREK Sbjct: 238 PIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREK 297 Query: 278 RGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLEN-IEQREIDKECA 336 L Y S+ + G + + + +N + I ++++ I + EI++ A Sbjct: 298 EHLAYYASSS--IDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKA 355 Query: 337 KIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSST 395 + + I + + + + + ++L +E+ I I+A+T +I VAK++ Sbjct: 356 MLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRLELQA 414 Score = 32.1 bits (72), Expect = 0.25 Identities = 19/176 (10%), Positives = 50/176 (28%), Gaps = 15/176 (8%) Query: 236 EHMMLGFNGCA-YQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDN 294 +M Y ++ L+ LA + G + ++ + S++ ++++ + Sbjct: 47 SSLM--ETNSLNYPNQVK-LSERLAELYGASFGIGVSKK-GNQHWFNISMNIVNDHYLQD 102 Query: 295 GVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRAL 354 + + I+ E +E + A L E A Sbjct: 103 SQVL-------AEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYAS 155 Query: 355 EISKQVMFCGSILCSEKII---DTISAITCEDIVGVAKKIFSSTPTLAILGPPMDH 407 + V F S ++ T + +K+ + + ++ Sbjct: 156 LALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNE 211 >3go9_A Insulinase family protease; IDP00573, structural genomics, center for structural genomics of infectious diseases, csgid, hydrolase; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Score = 187 bits (474), Expect = 5e-48 Identities = 67/431 (15%), Positives = 144/431 (33%), Gaps = 36/431 (8%) Query: 2 NLRISKTSSGITVI---TEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTK 58 + K +G + T P D +++ + GS +E +E G AH L + + Sbjct: 25 AWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSAS 84 Query: 59 RTAKEIVEEIEK----VGGDINAYTSLEHTSYHAWVLK---EHVPLALEIIGDMLSNSSF 111 T ++ ++ A TS + T Y + + + AL + D N + Sbjct: 85 FTPAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAV 144 Query: 112 NPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKP---ETISSFTP 168 + + N + I E W+ ++ G ++G Sbjct: 145 SEQTVNAALNTATDPIATFPQ--------NIQEPWWRYRLKGSSLIGHDPGQPVTQPVDV 196 Query: 169 EKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVC---SVAKIKESMKPAVYVGG 225 EK+ F + YT D M + VG VD +Q+ F+ A + + Sbjct: 197 EKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEP 256 Query: 226 EYIQKRDLAEEHMMLGFNGCAYQSRDFY--LTNILASILGDGMSSRLFQEVREKRGLCYS 283 + A++ + L ++ + +D + + + + + Q + + Sbjct: 257 VSLMNEQAAQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALFWHIKQVLEKNNQKNLK 316 Query: 284 ISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLEN-IEQREIDKECAKIHAKL 342 + I T EN+ A + + + +L N + Q E D + + +L Sbjct: 317 LGFDCRVQYQRAQCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQL 376 Query: 343 IK-----SQERSYLRALEISKQVMFCGSILCSEKIIDT----ISAITCEDIVGVAKKIFS 393 K ++ + + + + + E+ +S +T ++ K+ S Sbjct: 377 SKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLS 436 Query: 394 STPTLAILGPP 404 TL ++ P Sbjct: 437 QDTTLVLMQPK 447 >2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Score = 174 bits (440), Expect = 5e-44 Identities = 52/366 (14%), Positives = 116/366 (31%), Gaps = 39/366 (10%) Query: 33 GSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEI--EKVGGDINAYTSLEHTSYHAWV 90 R ++ G+ H L+H + G+ K KE E+ + +NA+T + T Y Sbjct: 64 VFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVAS 123 Query: 91 L-KEHVPLALEIIGDMLSNSSF-----------------NPSDIERERNVVLEEIGMSED 132 + +++ D + +PS+ + VV E+ Sbjct: 124 TNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYS 183 Query: 133 DSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVVCVGAV 192 + L + + + G G P+ I + T E+ F + Y + G Sbjct: 184 QPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDD 243 Query: 193 DHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEH--------------- 237 D + + Y + + + + L E++ Sbjct: 244 DPVHRLRVLSEYLD--MFEASPSPNSSKIKFQKLFSEPVRLVEKYPAGRDGDLKKKHMLC 301 Query: 238 MMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVL 297 + + + L ++ +S L + + E +S+ + Sbjct: 302 VNWLLSEKPLDLQTQLALGFLDHLMLGTPASPLRKILLESGLGEALVSSGLSDELLQPQF 361 Query: 298 YI-ASATAKENIMALTSSIVEVVQSLLEN-IEQREIDKECAKIHAKLIKSQERSYLRALE 355 I ++EN+ + I++ ++ L E + ++ I L ++ S+ R L Sbjct: 362 GIGLKGVSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLS 421 Query: 356 ISKQVM 361 + Q + Sbjct: 422 LMLQSI 427 Score = 96.3 bits (238), Expect = 1e-20 Identities = 40/389 (10%), Positives = 103/389 (26%), Gaps = 39/389 (10%) Query: 42 HGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTS----------LEHTSYHAWVL 91 + F + +L GT T ++ + I + G I+ Y + Sbjct: 592 PLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSM 651 Query: 92 KEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDD--------SWDFLDARFS 143 ++ +L F D +R + V + E+ + +DA + Sbjct: 652 AGRADDLFNLMNCLLQEVQFT--DQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLN 709 Query: 144 EMVW-KDQIIGRPILGKPETISSFTP-------EKIISFVSRNYTADRMYVVCVGAVDH- 194 W +Q+ G L T+ + + V Sbjct: 710 IAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNGCIVNMTADGKSL 769 Query: 195 EFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQ-KRDLAEEHMMLGFNGCAYQSRDFY 253 V + ++ + + ++ N + Sbjct: 770 TNVEKSVAKFLDLLPENPSGGLVTWDGRLPLRNEAIVIPTQVNYVGKAGNIYSTGYELDG 829 Query: 254 LTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTS 313 +++ + ++ L+ VR G Y ++ S + + Sbjct: 830 SAYVISKHIS---NTWLWDRVRVS-GGAYGGFCDFDSHSGVFSYLSYRDPNLLKTLDIYD 885 Query: 314 SIVEVVQSLLENIEQREIDKECAKIHA-KLIKSQERSYLRALEISKQVMFCGSILCSEKI 372 + ++ +++Q + K A I + S + + + + + ++ Sbjct: 886 GTGDFLRG--LDVDQETLTK--AIIGTIGDVDSYQLPDAKGYSSLLRHLLGVTDEERQRK 941 Query: 373 IDTISAITCEDIVGVAKKIFSSTPTLAIL 401 + I + +D A+ I + Sbjct: 942 REEILTTSLKDFKDFAQAIDVVRDKGVAV 970 >3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Score = 166 bits (419), Expect = 1e-41 Identities = 89/402 (22%), Positives = 169/402 (42%), Gaps = 3/402 (0%) Query: 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAK 62 R ++ +G+ VI EV+P S + ++ G+R+E +EE G++HFLEHM+FKG A Sbjct: 3 REAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDAL 62 Query: 63 EIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNV 122 + +++G NA+TS E T Y+ VL E L + + + D + E+ V Sbjct: 63 AVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAKL-LRPALREEDFQTEKLV 121 Query: 123 VLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTAD 182 +LEEI +D ++ +G +LG E+I++ T E + ++ R Y Sbjct: 122 ILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITALTREGMAAYHRRRYLPK 181 Query: 183 RMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYV-GGEYIQKRDLAEEHMMLG 241 M + G VD + +++ E + + + P G E +++ Sbjct: 182 NMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEKARALYLVAL 241 Query: 242 FNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIAS 301 F G AYQ + +LA +LG+ S RL + +K + E Sbjct: 242 FPGVAYQEEARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQ 301 Query: 302 ATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVM 361 A L E+ + E + + E+++ + L+ + E R + + + Sbjct: 302 ADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYL 361 Query: 362 FCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAILGP 403 + G L E++ + +T ++ + ++ F ++ P Sbjct: 362 YTGRYLSLEEVKARVQRVTSREVNALLERGFLEKGLYYLVLP 403 >3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2; 1.90A {Pseudomonas fluorescens pf-5} Length = 434 Score = 155 bits (391), Expect = 2e-38 Identities = 69/416 (16%), Positives = 145/416 (34%), Gaps = 8/416 (1%) Query: 1 MNLRISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKR 59 +N++ T+ G V+ + +++ AGS + G+A ML +G + Sbjct: 12 LNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGK 70 Query: 60 TAKEIVEEIEKVGGDINAYTSLEH--TSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIE 117 I + E +G D + S + + AL++ +++ +F + Sbjct: 71 DVGAIAQGFEGLGADFGNGAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLA 130 Query: 118 RERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSR 177 R +N +L + + + ++ G ++I T ++ +F ++ Sbjct: 131 RIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQLKAFHAK 190 Query: 178 NYTADRMYVVCVGAVDHEFCVSQV-ESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEE 236 Y A + + VG + + + + + + +PA + ++ Sbjct: 191 AYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPSSQT 250 Query: 237 HMMLGFNGCAYQSRDFYLTNILASI-LGDGMSSRLFQEVREKRGLCYSISAHHENFSDNG 295 +ML G D+ ++ I G G +RL EVREKRGL Y + + G Sbjct: 251 SLMLAQLGIDRDDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARG 310 Query: 296 VLYIASATAKENIMALTSSIVEVVQSLLEN-IEQREIDKECAKIHAKLIKSQERSYLRAL 354 I T E + +V L+N Q+E+D ++ S + Sbjct: 311 PFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVG 370 Query: 355 EISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFS-STPTLAILGPPMDHVP 409 ++ + + E + +T E + K + + GP + P Sbjct: 371 QLGAMGFYNLPLSYLEDFMRQSQELTVEQVKAAMNKHLNVDKMVIVSAGPTVAQKP 426 >3ih6_A Putative zinc protease; bordetella pertussis tohama I, structural genomics, PSI-2, protein structure initiative; 2.15A {Bordetella pertussis} Length = 197 Score = 80.7 bits (198), Expect = 6e-16 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 5/177 (2%) Query: 230 KRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHE 289 +R + ++ A S DF ++ A+IL D SSRL+ + L + Sbjct: 19 RRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSSRLYHALVPT-KLASGVFGFTM 77 Query: 290 NFSDNGVLYIASATAKENIM--ALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQE 347 + D G+ + AL + + + Q E+++ +K ++ Sbjct: 78 DQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYA 137 Query: 348 RSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFS-STPTLAILGP 403 + +S+ + G D + +D+ A S T P Sbjct: 138 DPEKVGVALSEA-IASGDWRLFFLQRDRVREAKLDDVQRAAVAYLVRSNRTEGRYIP 193 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 50.7 bits (121), Expect = 6e-07 Identities = 80/504 (15%), Positives = 138/504 (27%), Gaps = 224/504 (44%) Query: 13 TVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKV- 71 T + + + ++ I A +++ LF+ + A+ + + Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSA--------LFRAVGEGNAQ-----LVAIF 160 Query: 72 -G-GDINAYTSLE-----HTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVL 124 G G+ + Y E + +YH V L ++ + LS D E+ Sbjct: 161 GGQGNTDDY--FEELRDLYQTYHVLV----GDL-IKFSAETLSELIRTTLDAEKVFTQ-- 211 Query: 125 EEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPET-------IS---SFTPEKIISF 174 G+ + L+ W L P +S S P +I Sbjct: 212 ---GL------NILE-------W---------LENPSNTPDKDYLLSIPISC-P--LIGV 243 Query: 175 VS-RNYTADRMYVVC--------------VGAVDHEFCVSQ--V-----------ESYFN 206 + +Y V GA H SQ V ES+F Sbjct: 244 IQLAHY-----VVTAKLLGFTPGELRSYLKGATGH----SQGLVTAVAIAETDSWESFF- 293 Query: 207 VCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASIL---- 262 S++ A+ +L F G + T++ SIL Sbjct: 294 --------VSVRKAI----T------------VLFFIGVRCY-EAYPNTSLPPSILEDSL 328 Query: 263 --GDG----MSSRLFQEVREKRGLCYSISAHHENFSD--NGVL------YIASATAKENI 308 +G M S + L + + + + N L I+ +N+ Sbjct: 329 ENNEGVPSPMLS-----I---SNL--TQEQVQD-YVNKTNSHLPAGKQVEISLVNGAKNL 377 Query: 309 MALTSSIVEVV----QSL------LENIE-QREIDKECAKIHA---KLIKSQER------ 348 VV QSL L + +D+ ++I KL K R Sbjct: 378 ---------VVSGPPQSLYGLNLTLRKAKAPSGLDQ--SRIPFSERKL-KFSNRFLPVAS 425 Query: 349 ----SYLR-ALEISKQ------VMFCGSIL---------------CSEKIIDT-ISAITC 381 L A ++ + V F + S I + + I Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485 Query: 382 EDIVGVAKKIFSSTPTLAIL--GP 403 + F +T IL GP Sbjct: 486 LPVKWETTTQFKAT---HILDFGP 506 Score = 40.3 bits (94), Expect = 9e-04 Identities = 35/281 (12%), Positives = 77/281 (27%), Gaps = 109/281 (38%) Query: 157 LGKPETISSFTPEKIISFVSRNYTADRM-------YVVCVGAVDHEFCVSQVESYF---- 205 + ++ E + F+ Y + + + + EF E+ + Sbjct: 48 FAADDEPTT-PAELVGKFL--GYVSSLVEPSKVGQFDQVLNLCLTEF-----ENCYLEGN 99 Query: 206 NVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASIL--- 262 ++ ++A + ++ ++L + + R F S L Sbjct: 100 DIHALAA---KLLQEN--DTTLVKTKELIKNY----ITARIMAKRPF--DKKSNSALFRA 148 Query: 263 -------------GDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIM 309 G G + F+E+R+ LY T + Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRD--------------------LY---QTYHVLVG 185 Query: 310 ALTSSIVEVVQSLLENIEQREIDKECAKIHAK---LIK------SQ-ERSYLRALEISKQ 359 L E + L+ E K+ + +++ + ++ YL +S Sbjct: 186 DLIKFSAETLSELIRTTLDAE------KVFTQGLNILEWLENPSNTPDKDYL----LSIP 235 Query: 360 VMFCGSILCSEKIIDTIS----AITCEDIVGVAKKIFSSTP 396 + S +I I +T K+ TP Sbjct: 236 I--------SCPLIGVIQLAHYVVTA--------KLLGFTP 260 Score = 38.4 bits (89), Expect = 0.003 Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 44/183 (24%) Query: 246 AYQSRDFYLT--NILASILGDGMSSRLF---QEVREKRGLCYSISAHHENFSDNGVLYIA 300 AY +R L+ ++ +L + + F +++E+ + ++ Sbjct: 3 AYSTRPLTLSHGSLEHVLL---VPTASFFIASQLQEQ------FNKILPEPTEG------ 47 Query: 301 SATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKL---IKSQERSYLRALEIS 357 A E ++ E+V L + + + L + E YL +I Sbjct: 48 FAADDE-----PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102 Query: 358 KQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSS-TPTLAILGPPMDHVPTTSELIH 416 +L T+ K++ + + P D S L Sbjct: 103 ---ALAAKLLQENDT--TLVK---------TKELIKNYITARIMAKRPFDKKS-NSALFR 147 Query: 417 ALE 419 A+ Sbjct: 148 AVG 150 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 32.6 bits (74), Expect = 0.17 Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 16/57 (28%) Query: 323 LENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILC----SEKIIDT 375 N+ EC K+++ + C C S+K++DT Sbjct: 15 GPNLNIVLTCPECKVYPPKIVERFSEGD----------VVCAL--CGLVLSDKLVDT 59 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.1 bits (69), Expect = 0.54 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 33/56 (58%) Query: 347 ERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFS--STPTLAI 400 E+ L+ L+ S L K+++ S P LAI Sbjct: 18 EKQALKKLQAS---------L----------------------KLYADDSAPALAI 42 >1nj1_A Proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase; HET: 5CA; 2.55A {Methanothermobacterthermautotrophicus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Length = 501 Score = 30.8 bits (69), Expect = 0.56 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 8/128 (6%) Query: 276 EKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDK-- 333 E RG+ + + + T ++ L I E ++ L+++I + + Sbjct: 366 EMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADL-QGIEETLRELMKDILENLRTRAW 424 Query: 334 ECAKIHAKLIKSQERSYLRALEISK---QVMFCGSILCSEKIIDTISA-ITCEDIVGVAK 389 E + + ++ E R ++ + M+CG C + + + I G Sbjct: 425 ERMESEIREAETLE-EASRIVDEKRGIISFMWCGEEECGMDVEEKVRVDILGIQEEGSGT 483 Query: 390 KIFSSTPT 397 I Sbjct: 484 CINCGREA 491 >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 Score = 29.0 bits (64), Expect = 2.0 Identities = 7/48 (14%), Positives = 14/48 (29%) Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNS 109 + V D+ T L V AL++ + ++ Sbjct: 190 YDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237 >1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptide processing, protein translocation, membrane bound proteinase; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 1t7d_A* 1kn9_A Length = 248 Score = 28.4 bits (62), Expect = 2.8 Identities = 13/66 (19%), Positives = 23/66 (34%) Query: 92 KEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQI 151 H L + I D + P V + M D+ + D+R+ V + + Sbjct: 158 VTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANL 217 Query: 152 IGRPIL 157 +GR Sbjct: 218 VGRATA 223 >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 Score = 28.0 bits (61), Expect = 4.0 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 2/80 (2%) Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLA--LEIIGDMLSNSSFNPSDIERE 119 +IV + K G N +S T ++ + L+++ D S + Sbjct: 357 TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF 416 Query: 120 RNVVLEEIGMSEDDSWDFLD 139 V E + +SED+ + + Sbjct: 417 PETVDEILDVSEDEGEELIS 436 >2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* Length = 180 Score = 26.9 bits (59), Expect = 9.7 Identities = 7/33 (21%), Positives = 11/33 (33%) Query: 47 FLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYT 79 + +A EI + G+I YT Sbjct: 138 AGRALKKHAGESMSASEIARAALETAGEICVYT 170 >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 Score = 26.6 bits (58), Expect = 9.8 Identities = 3/19 (15%), Positives = 8/19 (42%) Query: 123 VLEEIGMSEDDSWDFLDAR 141 + G++ D + + R Sbjct: 396 AYKANGLNPDPYYWYTQQR 414 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.133 0.379 Gapped Lambda K H 0.267 0.0528 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,601,678 Number of extensions: 171177 Number of successful extensions: 645 Number of sequences better than 10.0: 1 Number of HSP's gapped: 599 Number of HSP's successfully gapped: 39 Length of query: 424 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 329 Effective length of database: 3,390,050 Effective search space: 1115326450 Effective search space used: 1115326450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.6 bits)