RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780464|ref|YP_003064877.1| M16 family peptidase [Candidatus Liberibacter asiaticus str. psy62] (424 letters) >d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Score = 125 bits (313), Expect = 1e-29 Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 10/204 (4%) Query: 220 AVYVGGEYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDG--------MSSRLF 271 A Y GGE ++ + H L A S + ++L +LG G +S L+ Sbjct: 2 AKYHGGEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLY 61 Query: 272 QEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIV-EVVQSLLENIEQRE 330 Q V + + +SA + ++SD+G+ + + + + + +V N+ + Sbjct: 62 QAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPD 121 Query: 331 IDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKK 390 + K+ A + S E S E+ Q + GS ++ I A+ D++ AKK Sbjct: 122 VQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKK 181 Query: 391 IFSSTPTLAILGPPMDHVPTTSEL 414 S ++A G + H P EL Sbjct: 182 FVSGRKSMAASG-NLGHTPFIDEL 204 >d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Score = 116 bits (290), Expect = 4e-27 Identities = 42/214 (19%), Positives = 88/214 (41%), Gaps = 14/214 (6%) Query: 218 KPAVYVGGEYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGD---------GMSS 268 P G +I++ L H+ + G ++ + D+++ +I+G+ S Sbjct: 3 LPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPS 62 Query: 269 RLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKEN---IMALTSSIVEVVQSLLEN 325 L + L S + +++D+G+ + T + + + E + Sbjct: 63 PLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGK 122 Query: 326 IEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIV 385 I E+++ A++ A L+ S + S +I +QV+ G L E++ + + IT +DI+ Sbjct: 123 ISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDII 182 Query: 386 GVAKKIFSSTP-TLAILGPPMDHVPTTSELIHAL 418 A + P ++ LG VP S + L Sbjct: 183 MWANYRLQNKPVSMVALGNT-STVPNVSYIEEKL 215 >d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Score = 114 bits (285), Expect = 2e-26 Identities = 58/203 (28%), Positives = 112/203 (55%) Query: 3 LRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAK 62 ++S+ +G+ V +E + V V I AGSR E ++ +G +F+EH+ FKGT R Sbjct: 13 TQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGN 72 Query: 63 EIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNV 122 + +E+E +G +NAY++ EHT+Y+ L + +P A+E++ D++ N S S IE+ER+V Sbjct: 73 ALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDV 132 Query: 123 VLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTAD 182 +L+E+ ++ D + ++ + + + G E + + + ++SR+Y A Sbjct: 133 ILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAP 192 Query: 183 RMYVVCVGAVDHEFCVSQVESYF 205 RM + G ++H + + +F Sbjct: 193 RMVLAAAGGLEHRQLLDLAQKHF 215 >d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Score = 113 bits (283), Expect = 3e-26 Identities = 36/206 (17%), Positives = 91/206 (44%), Gaps = 2/206 (0%) Query: 2 NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61 +L ++ +G+ + + ++ + + I+AGSR E G +H L T ++ Sbjct: 7 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASS 66 Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121 +I IE VGG ++ ++ E+ +Y L++ V + +E + ++ + F ++ + Sbjct: 67 FKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQP 126 Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTA 181 + + ++ + + +++ + + I TP ++ +V ++T+ Sbjct: 127 QLRIDKAVALQNPQAHVIENLHAAAYRNALA-NSLYCPDYRIGKVTPVELHDYVQNHFTS 185 Query: 182 DRMYVVCVGAVDHEFCVSQVESYFNV 207 RM ++ +G V H E + N+ Sbjct: 186 ARMALIGLG-VSHPVLKQVAEQFLNI 210 >d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Score = 113 bits (282), Expect = 3e-26 Identities = 37/210 (17%), Positives = 68/210 (32%), Gaps = 20/210 (9%) Query: 17 EVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEI--EKVGGD 74 EVM + + R ++ G+ H L+H + G+ K KE E+ + Sbjct: 34 EVMSVSNEDENKVFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTF 93 Query: 75 INAYTSLEHTSYHAWVLK------------------EHVPLALEIIGDMLSNSSFNPSDI 116 +NA+T + T Y + V A + +PS+ Sbjct: 94 LNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSED 153 Query: 117 ERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVS 176 + VV E+ + L + + + G G P+ I + T E+ F Sbjct: 154 ISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHR 213 Query: 177 RNYTADRMYVVCVGAVDHEFCVSQVESYFN 206 + Y + G D + + Y + Sbjct: 214 QYYHPSNARIWFYGDDDPVHRLRVLSEYLD 243 >d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Score = 109 bits (273), Expect = 4e-25 Identities = 39/194 (20%), Positives = 77/194 (39%), Gaps = 4/194 (2%) Query: 12 ITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKV 71 +TV P + + V + GSR ++ G+AH L F+ T R+A ++V E E + Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRESELL 58 Query: 72 GGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSE 131 GG + E+ + A LK+ +P + + D+L ++F P ++ Sbjct: 59 GGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVA 118 Query: 132 DDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVVCVGA 191 + + + +G P+ + + + + I F + YT + + V Sbjct: 119 EQCPVKSAEDQLYAITFRKGLGNPL--LYDGVERVSLQDIKDFADKVYTKENLEVSGENV 176 Query: 192 VDHEFCVSQVESYF 205 V+ + ES Sbjct: 177 VEADLKRFVDESLL 190 >d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 209 Score = 107 bits (268), Expect = 2e-24 Identities = 29/203 (14%), Positives = 69/203 (33%), Gaps = 11/203 (5%) Query: 222 YVGGEY-IQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASIL--------GDGMSSRLFQ 272 + G + ++ L H+ + G + D + +I+ G S Sbjct: 3 FTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLA 62 Query: 273 EVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREID 332 + LC S + ++D G+L +I + + L + + E+ Sbjct: 63 SIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVL 122 Query: 333 KECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIF 392 + + L+ + + +I + ++ G + + I+ + + V K F Sbjct: 123 RGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYF 182 Query: 393 SST-PTLAILGPPMDHVPTTSEL 414 P +A GP + +P + + Sbjct: 183 YDQCPAVAGFGPI-EQLPDYNRI 204 Score = 27.1 bits (59), Expect = 2.5 Identities = 14/156 (8%), Positives = 33/156 (21%), Gaps = 7/156 (4%) Query: 44 MAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSLEHTSYH---AWVLKEHVPLALE 100 + H+ I + T + + Sbjct: 44 IGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMF 103 Query: 101 IIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGK- 159 ++ + ++ E R L + D ++ GR I Sbjct: 104 VLQGQWMRLCTSATESEVLRGKNLLRNALVS--HLDGTTPVCEDIGRSLLTYGRRIPLAE 161 Query: 160 -PETISSFTPEKIISFVSRNYTADRMYVVCVGAVDH 194 I+ + S+ + V G ++ Sbjct: 162 WESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQ 197 >d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Score = 106 bits (266), Expect = 3e-24 Identities = 33/200 (16%), Positives = 68/200 (34%), Gaps = 13/200 (6%) Query: 218 KPAVYVGGEY-IQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDG---------MS 267 K A ++G E ++ L + + L G S ++++ + A I G Sbjct: 1 KKAAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQG 60 Query: 268 SRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLENIE 327 +L ++E + + + I L ++ L ++ Sbjct: 61 IKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVT 120 Query: 328 QREIDKECAKIHAKLIKSQER--SYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIV 385 E+++ + + +L + E A + +V+ GS L + I AIT +D+ Sbjct: 121 DTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVK 180 Query: 386 GVAKKIF-SSTPTLAILGPP 404 A K +A G Sbjct: 181 AWAGKRLWDQDIAIAGTGQI 200 >d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Score = 106 bits (265), Expect = 3e-24 Identities = 45/210 (21%), Positives = 85/210 (40%), Gaps = 21/210 (10%) Query: 220 AVYVGGEYIQKR-----DLAEE-HMMLGFNGCAYQSRDFYLTNILASILGD--------- 264 A Y GGE +L E H+ +GF G D Y L ++LG Sbjct: 2 AQYTGGESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGP 61 Query: 265 --GMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSL 322 GM SRL+ V + + A + ++SD+G+ I+ + + I + + + Sbjct: 62 GKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNT 121 Query: 323 L----ENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISA 378 + + E+ + ++ + L+ + E + ++ +QV+ G + ++I I Sbjct: 122 FANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIED 181 Query: 379 ITCEDIVGVAKKIFSSTPTLAILGPPMDHV 408 + +DI VA+ IF+ A G V Sbjct: 182 LKPDDISRVAEMIFTGNVNNAGNGKGRATV 211 >d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Score = 106 bits (265), Expect = 3e-24 Identities = 44/204 (21%), Positives = 86/204 (42%), Gaps = 1/204 (0%) Query: 2 NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61 N ++S ++G+ V T P + + + I AGSR E + G H L+ + FK T Sbjct: 5 NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEG 64 Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121 + + E +E +GG+ +S E+ Y A V + V L+++ + + +++ ++ Sbjct: 65 RAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKL 124 Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTA 181 EI L + + +G P++ I S + ++ + ++ YT Sbjct: 125 SAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTP 184 Query: 182 DRMYVVCVGAVDHEFCVSQVESYF 205 + VG V HE + Y Sbjct: 185 ENTVAAFVG-VPHEKALELTGKYL 207 >d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Score = 103 bits (257), Expect = 2e-23 Identities = 86/219 (39%), Positives = 127/219 (57%), Gaps = 6/219 (2%) Query: 3 LRISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61 R SK +G+T+ TE +P SA V + + AGSR E + +G AHFLEH+ FKGT R Sbjct: 3 TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQ 62 Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121 + I EIE +G +NAYTS E+T Y+A L+E +P A++I+ D+L+ S + S IERER+ Sbjct: 63 QGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERD 122 Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTA 181 V++ E + + + E+ +KDQ +GR ILG + I S T + ++++NY Sbjct: 123 VIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKG 182 Query: 182 DRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPA 220 DRM + GAVDHE V + YF + +S P Sbjct: 183 DRMVLAGAGAVDHEKLVQYAQKYF-----GHVPKSESPV 216 >d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Score = 102 bits (254), Expect = 6e-23 Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 17/223 (7%) Query: 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAK 62 +++ S+GI V TE P +A V V +G+ NE +G+++ +++ Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENSAV-- 59 Query: 63 EIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSS---FNPSDIERE 119 K G +++ S + SY L +L+ + + S+ E Sbjct: 60 -----AAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEAT 114 Query: 120 RNVVLEEIGMSED-DSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRN 178 + VL+++ ED D + + +++ + P G E++ + + SF + + Sbjct: 115 KKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNH 174 Query: 179 YTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAV 221 + VV G + HE V+ +ES ++ KP + Sbjct: 175 FLNSNAVVVGTGNIKHEDLVNSIESKN-----LSLQTGTKPVL 212 >d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Score = 89.8 bits (221), Expect = 4e-19 Identities = 43/208 (20%), Positives = 84/208 (40%), Gaps = 6/208 (2%) Query: 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAK 62 + + +G+ V+ P + + + GS + + G+AH+LEHM G+ K Sbjct: 22 QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQA 81 Query: 63 EIVEEI-EKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121 + + E + GG NA T+ T+++ V + +P A++ + D ++ + ERERN Sbjct: 82 DSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERN 141 Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETI----SSFTPEKIISFVSR 177 V E+ M+ + +E + + G ET+ + + + F + Sbjct: 142 AVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEK 201 Query: 178 NYTADRMYVVCVGAVDHEFCVSQVESYF 205 Y+A+ M V F Sbjct: 202 YYSANLMKAVIYSNKPLPELAKMAADTF 229 >d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Score = 59.5 bits (144), Expect = 5e-10 Identities = 25/197 (12%), Positives = 49/197 (24%), Gaps = 50/197 (25%) Query: 219 PAVYVGGEYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKR 278 P ++G E + + G +LA+ L +S Sbjct: 3 PKFFLGEENRVRFIGDS----VAAIGIPVNKASLAQYEVLANYLTSALSEL--------- 49 Query: 279 GLCYSISAHHENFSDNGVLYI-ASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAK 337 SA + F+D G+ + + + IV + + +++ A Sbjct: 50 -SGLISSAKLDKFTDGGLFTLFVRDQDSAVVSSNIKKIVA------DLKKGKDLSP--AI 100 Query: 338 IHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPT 397 + KL E + E K Sbjct: 101 NYTKL------KNAVQNE--------------------SVSSPIELNFDAVKDFKLGKFN 134 Query: 398 LAILGPPMDHVPTTSEL 414 +G + ++P EL Sbjct: 135 YVAVG-DVSNLPYLDEL 150 >d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Length = 228 Score = 55.5 bits (133), Expect = 8e-09 Identities = 18/151 (11%), Positives = 52/151 (34%), Gaps = 10/151 (6%) Query: 251 DFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMA 310 D Y ++ +S+LG + + ++R + L Y++ A + + + + Sbjct: 36 DEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSF 95 Query: 311 LTSSIVEVVQSLLENIE---QREIDKECAKIHAKLIKSQ----ERSYLRALEISKQVMFC 363 L + + E + + +++++ E + + + + M Sbjct: 96 LWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRF 155 Query: 364 GSILCSEKIIDTISAITCEDIVGVAKKIFSS 394 S +KI+ I +T + + + Sbjct: 156 DSR---DKIVAQIKLLTPQKLADFFHQAVVE 183 >d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 196 Score = 54.0 bits (129), Expect = 2e-08 Identities = 14/167 (8%), Positives = 45/167 (26%), Gaps = 9/167 (5%) Query: 240 LGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYI 299 N + +++ + ++ L+ VR G Y ++ S Sbjct: 19 KAGNIYSTGYELDGSAYVISKHIS---NTWLWDRVRVS-GGAYGGFCDFDSHSGVFSYLS 74 Query: 300 ASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQ 359 + + + ++ +++Q + K + Q + + Sbjct: 75 YRDPNLLKTLDIYDGTGDFLRG--LDVDQETLTKAIIGTIGDVDSYQLPDA-KGYSSLLR 131 Query: 360 VMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTP--TLAILGPP 404 + + ++ + I + +D A+ I + Sbjct: 132 HLLGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASA 178 >d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]} Length = 247 Score = 28.8 bits (63), Expect = 0.81 Identities = 13/66 (19%), Positives = 23/66 (34%) Query: 92 KEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQI 151 H L + I D + P V + M D+ + D+R+ V + + Sbjct: 157 VTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANL 216 Query: 152 IGRPIL 157 +GR Sbjct: 217 VGRATA 222 >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 Score = 27.4 bits (60), Expect = 2.2 Identities = 15/121 (12%), Positives = 41/121 (33%), Gaps = 7/121 (5%) Query: 21 IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTS 80 + F K G + + + + E + G+ ++ ++E+ E + Y Sbjct: 136 VYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSDEKASQEMEEPFWIINIPREFYDR 195 Query: 81 LEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDA 140 + + L L +++ + E+ + + G++ED +L+ Sbjct: 196 EVDGFWRNY------DLILPYGYGEVASGGEREWEYEKIVAK-IRKAGLNEDSFRPYLEI 248 Query: 141 R 141 Sbjct: 249 A 249 >d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180 Score = 26.7 bits (58), Expect = 4.1 Identities = 7/32 (21%), Positives = 11/32 (34%) Query: 48 LEHMLFKGTTKRTAKEIVEEIEKVGGDINAYT 79 + +A EI + G+I YT Sbjct: 139 GRALKKHAGESMSASEIARAALETAGEICVYT 170 >d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Score = 26.2 bits (56), Expect = 4.6 Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 5/45 (11%) Query: 299 IASATAKENIMALTS---SIVEVVQSLLENIEQREIDKECAKIHA 340 A + +T+ + Q+ L+ I +D+ ++ A Sbjct: 4 YAETDVADLQARMTAGELDSTTLTQAYLQRIA--ALDRTGPRLRA 46 >d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 370 Score = 26.2 bits (58), Expect = 5.3 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 6/38 (15%) Query: 102 IGDMLSNSSFN------PSDIERERNVVLEEIGMSEDD 133 I ++LSN + I+ R ++ E+G++E D Sbjct: 233 IKNILSNKTLREHNSFVERCIDWNRELLKRELGLAESD 270 >d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} Length = 584 Score = 25.9 bits (56), Expect = 6.9 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%) Query: 327 EQREIDKECAKIHAKLIK-SQERSYLRALEISK 358 E + I+KE A I +K Y + + K Sbjct: 21 EIKRINKELANIRSKFKGDKALDGYSKKKYVCK 53 >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 Score = 25.5 bits (55), Expect = 9.4 Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%) Query: 99 LEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDAR 141 L G +++ E L+ GM + +L+ Sbjct: 229 LLFRGLEITSGGQRIHRYEELLES-LKAKGMDPEAFHGYLEVF 270 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.133 0.379 Gapped Lambda K H 0.267 0.0626 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,565,023 Number of extensions: 75491 Number of successful extensions: 264 Number of sequences better than 10.0: 1 Number of HSP's gapped: 239 Number of HSP's successfully gapped: 28 Length of query: 424 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 336 Effective length of database: 1,199,356 Effective search space: 402983616 Effective search space used: 402983616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.8 bits)