RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780464|ref|YP_003064877.1| M16 family peptidase
[Candidatus Liberibacter asiaticus str. psy62]
(424 letters)
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 125 bits (313), Expect = 1e-29
Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 10/204 (4%)
Query: 220 AVYVGGEYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDG--------MSSRLF 271
A Y GGE ++ + H L A S + ++L +LG G +S L+
Sbjct: 2 AKYHGGEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLY 61
Query: 272 QEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIV-EVVQSLLENIEQRE 330
Q V + + +SA + ++SD+G+ + + + + + +V N+ +
Sbjct: 62 QAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPD 121
Query: 331 IDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKK 390
+ K+ A + S E S E+ Q + GS ++ I A+ D++ AKK
Sbjct: 122 VQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKK 181
Query: 391 IFSSTPTLAILGPPMDHVPTTSEL 414
S ++A G + H P EL
Sbjct: 182 FVSGRKSMAASG-NLGHTPFIDEL 204
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 217
Score = 116 bits (290), Expect = 4e-27
Identities = 42/214 (19%), Positives = 88/214 (41%), Gaps = 14/214 (6%)
Query: 218 KPAVYVGGEYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGD---------GMSS 268
P G +I++ L H+ + G ++ + D+++ +I+G+ S
Sbjct: 3 LPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPS 62
Query: 269 RLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKEN---IMALTSSIVEVVQSLLEN 325
L + L S + +++D+G+ + T + + + E +
Sbjct: 63 PLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGK 122
Query: 326 IEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIV 385
I E+++ A++ A L+ S + S +I +QV+ G L E++ + + IT +DI+
Sbjct: 123 ISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDII 182
Query: 386 GVAKKIFSSTP-TLAILGPPMDHVPTTSELIHAL 418
A + P ++ LG VP S + L
Sbjct: 183 MWANYRLQNKPVSMVALGNT-STVPNVSYIEEKL 215
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 232
Score = 114 bits (285), Expect = 2e-26
Identities = 58/203 (28%), Positives = 112/203 (55%)
Query: 3 LRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAK 62
++S+ +G+ V +E + V V I AGSR E ++ +G +F+EH+ FKGT R
Sbjct: 13 TQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGN 72
Query: 63 EIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNV 122
+ +E+E +G +NAY++ EHT+Y+ L + +P A+E++ D++ N S S IE+ER+V
Sbjct: 73 ALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDV 132
Query: 123 VLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTAD 182
+L+E+ ++ D + ++ + + + G E + + + ++SR+Y A
Sbjct: 133 ILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAP 192
Query: 183 RMYVVCVGAVDHEFCVSQVESYF 205
RM + G ++H + + +F
Sbjct: 193 RMVLAAAGGLEHRQLLDLAQKHF 215
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 219
Score = 113 bits (283), Expect = 3e-26
Identities = 36/206 (17%), Positives = 91/206 (44%), Gaps = 2/206 (0%)
Query: 2 NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61
+L ++ +G+ + + ++ + + I+AGSR E G +H L T ++
Sbjct: 7 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASS 66
Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121
+I IE VGG ++ ++ E+ +Y L++ V + +E + ++ + F ++ +
Sbjct: 67 FKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQP 126
Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTA 181
+ + ++ + + +++ + + I TP ++ +V ++T+
Sbjct: 127 QLRIDKAVALQNPQAHVIENLHAAAYRNALA-NSLYCPDYRIGKVTPVELHDYVQNHFTS 185
Query: 182 DRMYVVCVGAVDHEFCVSQVESYFNV 207
RM ++ +G V H E + N+
Sbjct: 186 ARMALIGLG-VSHPVLKQVAEQFLNI 210
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 257
Score = 113 bits (282), Expect = 3e-26
Identities = 37/210 (17%), Positives = 68/210 (32%), Gaps = 20/210 (9%)
Query: 17 EVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEI--EKVGGD 74
EVM + + R ++ G+ H L+H + G+ K KE E+ +
Sbjct: 34 EVMSVSNEDENKVFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTF 93
Query: 75 INAYTSLEHTSYHAWVLK------------------EHVPLALEIIGDMLSNSSFNPSDI 116
+NA+T + T Y + V A + +PS+
Sbjct: 94 LNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSED 153
Query: 117 ERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVS 176
+ VV E+ + L + + + G G P+ I + T E+ F
Sbjct: 154 ISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHR 213
Query: 177 RNYTADRMYVVCVGAVDHEFCVSQVESYFN 206
+ Y + G D + + Y +
Sbjct: 214 QYYHPSNARIWFYGDDDPVHRLRVLSEYLD 243
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 202
Score = 109 bits (273), Expect = 4e-25
Identities = 39/194 (20%), Positives = 77/194 (39%), Gaps = 4/194 (2%)
Query: 12 ITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKV 71
+TV P + + V + GSR ++ G+AH L F+ T R+A ++V E E +
Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRESELL 58
Query: 72 GGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSE 131
GG + E+ + A LK+ +P + + D+L ++F P ++
Sbjct: 59 GGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVA 118
Query: 132 DDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVVCVGA 191
+ + + +G P+ + + + + I F + YT + + V
Sbjct: 119 EQCPVKSAEDQLYAITFRKGLGNPL--LYDGVERVSLQDIKDFADKVYTKENLEVSGENV 176
Query: 192 VDHEFCVSQVESYF 205
V+ + ES
Sbjct: 177 VEADLKRFVDESLL 190
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 209
Score = 107 bits (268), Expect = 2e-24
Identities = 29/203 (14%), Positives = 69/203 (33%), Gaps = 11/203 (5%)
Query: 222 YVGGEY-IQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASIL--------GDGMSSRLFQ 272
+ G + ++ L H+ + G + D + +I+ G S
Sbjct: 3 FTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLA 62
Query: 273 EVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREID 332
+ LC S + ++D G+L +I + + L + + E+
Sbjct: 63 SIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVL 122
Query: 333 KECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIF 392
+ + L+ + + +I + ++ G + + I+ + + V K F
Sbjct: 123 RGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYF 182
Query: 393 SST-PTLAILGPPMDHVPTTSEL 414
P +A GP + +P + +
Sbjct: 183 YDQCPAVAGFGPI-EQLPDYNRI 204
Score = 27.1 bits (59), Expect = 2.5
Identities = 14/156 (8%), Positives = 33/156 (21%), Gaps = 7/156 (4%)
Query: 44 MAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSLEHTSYH---AWVLKEHVPLALE 100
+ H+ I + T + +
Sbjct: 44 IGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMF 103
Query: 101 IIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGK- 159
++ + ++ E R L + D ++ GR I
Sbjct: 104 VLQGQWMRLCTSATESEVLRGKNLLRNALVS--HLDGTTPVCEDIGRSLLTYGRRIPLAE 161
Query: 160 -PETISSFTPEKIISFVSRNYTADRMYVVCVGAVDH 194
I+ + S+ + V G ++
Sbjct: 162 WESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQ 197
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 218
Score = 106 bits (266), Expect = 3e-24
Identities = 33/200 (16%), Positives = 68/200 (34%), Gaps = 13/200 (6%)
Query: 218 KPAVYVGGEY-IQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDG---------MS 267
K A ++G E ++ L + + L G S ++++ + A I G
Sbjct: 1 KKAAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQG 60
Query: 268 SRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLENIE 327
+L ++E + + + I L ++ L ++
Sbjct: 61 IKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVT 120
Query: 328 QREIDKECAKIHAKLIKSQER--SYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIV 385
E+++ + + +L + E A + +V+ GS L + I AIT +D+
Sbjct: 121 DTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVK 180
Query: 386 GVAKKIF-SSTPTLAILGPP 404
A K +A G
Sbjct: 181 AWAGKRLWDQDIAIAGTGQI 200
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase
(MPP) alpha chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 237
Score = 106 bits (265), Expect = 3e-24
Identities = 45/210 (21%), Positives = 85/210 (40%), Gaps = 21/210 (10%)
Query: 220 AVYVGGEYIQKR-----DLAEE-HMMLGFNGCAYQSRDFYLTNILASILGD--------- 264
A Y GGE +L E H+ +GF G D Y L ++LG
Sbjct: 2 AQYTGGESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGP 61
Query: 265 --GMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSL 322
GM SRL+ V + + A + ++SD+G+ I+ + + I + + +
Sbjct: 62 GKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNT 121
Query: 323 L----ENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISA 378
+ + E+ + ++ + L+ + E + ++ +QV+ G + ++I I
Sbjct: 122 FANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIED 181
Query: 379 ITCEDIVGVAKKIFSSTPTLAILGPPMDHV 408
+ +DI VA+ IF+ A G V
Sbjct: 182 LKPDDISRVAEMIFTGNVNNAGNGKGRATV 211
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase
(MPP) alpha chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 220
Score = 106 bits (265), Expect = 3e-24
Identities = 44/204 (21%), Positives = 86/204 (42%), Gaps = 1/204 (0%)
Query: 2 NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61
N ++S ++G+ V T P + + + I AGSR E + G H L+ + FK T
Sbjct: 5 NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEG 64
Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121
+ + E +E +GG+ +S E+ Y A V + V L+++ + + +++ ++
Sbjct: 65 RAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKL 124
Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTA 181
EI L + + +G P++ I S + ++ + ++ YT
Sbjct: 125 SAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTP 184
Query: 182 DRMYVVCVGAVDHEFCVSQVESYF 205
+ VG V HE + Y
Sbjct: 185 ENTVAAFVG-VPHEKALELTGKYL 207
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 222
Score = 103 bits (257), Expect = 2e-23
Identities = 86/219 (39%), Positives = 127/219 (57%), Gaps = 6/219 (2%)
Query: 3 LRISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61
R SK +G+T+ TE +P SA V + + AGSR E + +G AHFLEH+ FKGT R
Sbjct: 3 TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQ 62
Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121
+ I EIE +G +NAYTS E+T Y+A L+E +P A++I+ D+L+ S + S IERER+
Sbjct: 63 QGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERD 122
Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTA 181
V++ E + + + E+ +KDQ +GR ILG + I S T + ++++NY
Sbjct: 123 VIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKG 182
Query: 182 DRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPA 220
DRM + GAVDHE V + YF + +S P
Sbjct: 183 DRMVLAGAGAVDHEKLVQYAQKYF-----GHVPKSESPV 216
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 213
Score = 102 bits (254), Expect = 6e-23
Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 17/223 (7%)
Query: 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAK 62
+++ S+GI V TE P +A V V +G+ NE +G+++ +++
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENSAV-- 59
Query: 63 EIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSS---FNPSDIERE 119
K G +++ S + SY L +L+ + + S+ E
Sbjct: 60 -----AAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEAT 114
Query: 120 RNVVLEEIGMSED-DSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRN 178
+ VL+++ ED D + + +++ + P G E++ + + SF + +
Sbjct: 115 KKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNH 174
Query: 179 YTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAV 221
+ VV G + HE V+ +ES ++ KP +
Sbjct: 175 FLNSNAVVVGTGNIKHEDLVNSIESKN-----LSLQTGTKPVL 212
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId:
562]}
Length = 240
Score = 89.8 bits (221), Expect = 4e-19
Identities = 43/208 (20%), Positives = 84/208 (40%), Gaps = 6/208 (2%)
Query: 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAK 62
+ + +G+ V+ P + + + GS + + G+AH+LEHM G+ K
Sbjct: 22 QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQA 81
Query: 63 EIVEEI-EKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121
+ + E + GG NA T+ T+++ V + +P A++ + D ++ + ERERN
Sbjct: 82 DSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERN 141
Query: 122 VVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETI----SSFTPEKIISFVSR 177
V E+ M+ + +E + + G ET+ + + + F +
Sbjct: 142 AVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEK 201
Query: 178 NYTADRMYVVCVGAVDHEFCVSQVESYF 205
Y+A+ M V F
Sbjct: 202 YYSANLMKAVIYSNKPLPELAKMAADTF 229
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 59.5 bits (144), Expect = 5e-10
Identities = 25/197 (12%), Positives = 49/197 (24%), Gaps = 50/197 (25%)
Query: 219 PAVYVGGEYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKR 278
P ++G E + + G +LA+ L +S
Sbjct: 3 PKFFLGEENRVRFIGDS----VAAIGIPVNKASLAQYEVLANYLTSALSEL--------- 49
Query: 279 GLCYSISAHHENFSDNGVLYI-ASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAK 337
SA + F+D G+ + + + IV + + +++ A
Sbjct: 50 -SGLISSAKLDKFTDGGLFTLFVRDQDSAVVSSNIKKIVA------DLKKGKDLSP--AI 100
Query: 338 IHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPT 397
+ KL E + E K
Sbjct: 101 NYTKL------KNAVQNE--------------------SVSSPIELNFDAVKDFKLGKFN 134
Query: 398 LAILGPPMDHVPTTSEL 414
+G + ++P EL
Sbjct: 135 YVAVG-DVSNLPYLDEL 150
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli
[TaxId: 562]}
Length = 228
Score = 55.5 bits (133), Expect = 8e-09
Identities = 18/151 (11%), Positives = 52/151 (34%), Gaps = 10/151 (6%)
Query: 251 DFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMA 310
D Y ++ +S+LG + + ++R + L Y++ A + + + +
Sbjct: 36 DEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSF 95
Query: 311 LTSSIVEVVQSLLENIE---QREIDKECAKIHAKLIKSQ----ERSYLRALEISKQVMFC 363
L + + E + + +++++ E + + + + M
Sbjct: 96 LWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRF 155
Query: 364 GSILCSEKIIDTISAITCEDIVGVAKKIFSS 394
S +KI+ I +T + + +
Sbjct: 156 DSR---DKIVAQIKLLTPQKLADFFHQAVVE 183
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 196
Score = 54.0 bits (129), Expect = 2e-08
Identities = 14/167 (8%), Positives = 45/167 (26%), Gaps = 9/167 (5%)
Query: 240 LGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYI 299
N + +++ + ++ L+ VR G Y ++ S
Sbjct: 19 KAGNIYSTGYELDGSAYVISKHIS---NTWLWDRVRVS-GGAYGGFCDFDSHSGVFSYLS 74
Query: 300 ASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQ 359
+ + + ++ +++Q + K + Q + +
Sbjct: 75 YRDPNLLKTLDIYDGTGDFLRG--LDVDQETLTKAIIGTIGDVDSYQLPDA-KGYSSLLR 131
Query: 360 VMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTP--TLAILGPP 404
+ + ++ + I + +D A+ I +
Sbjct: 132 HLLGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASA 178
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 28.8 bits (63), Expect = 0.81
Identities = 13/66 (19%), Positives = 23/66 (34%)
Query: 92 KEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQI 151
H L + I D + P V + M D+ + D+R+ V + +
Sbjct: 157 VTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANL 216
Query: 152 IGRPIL 157
+GR
Sbjct: 217 VGRATA 222
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 27.4 bits (60), Expect = 2.2
Identities = 15/121 (12%), Positives = 41/121 (33%), Gaps = 7/121 (5%)
Query: 21 IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTS 80
+ F K G + + + + E + G+ ++ ++E+ E + Y
Sbjct: 136 VYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSDEKASQEMEEPFWIINIPREFYDR 195
Query: 81 LEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDA 140
+ + L L +++ + E+ + + G++ED +L+
Sbjct: 196 EVDGFWRNY------DLILPYGYGEVASGGEREWEYEKIVAK-IRKAGLNEDSFRPYLEI 248
Query: 141 R 141
Sbjct: 249 A 249
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 26.7 bits (58), Expect = 4.1
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 48 LEHMLFKGTTKRTAKEIVEEIEKVGGDINAYT 79
+ +A EI + G+I YT
Sbjct: 139 GRALKKHAGESMSASEIARAALETAGEICVYT 170
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 26.2 bits (56), Expect = 4.6
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 299 IASATAKENIMALTS---SIVEVVQSLLENIEQREIDKECAKIHA 340
A + +T+ + Q+ L+ I +D+ ++ A
Sbjct: 4 YAETDVADLQARMTAGELDSTTLTQAYLQRIA--ALDRTGPRLRA 46
>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4,
catalytic C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 370
Score = 26.2 bits (58), Expect = 5.3
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 102 IGDMLSNSSFN------PSDIERERNVVLEEIGMSEDD 133
I ++LSN + I+ R ++ E+G++E D
Sbjct: 233 IKNILSNKTLREHNSFVERCIDWNRELLKRELGLAESD 270
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 25.9 bits (56), Expect = 6.9
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 327 EQREIDKECAKIHAKLIK-SQERSYLRALEISK 358
E + I+KE A I +K Y + + K
Sbjct: 21 EIKRINKELANIRSKFKGDKALDGYSKKKYVCK 53
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 25.5 bits (55), Expect = 9.4
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 99 LEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDAR 141
L G +++ E L+ GM + +L+
Sbjct: 229 LLFRGLEITSGGQRIHRYEELLES-LKAKGMDPEAFHGYLEVF 270
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.379
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,565,023
Number of extensions: 75491
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 28
Length of query: 424
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 336
Effective length of database: 1,199,356
Effective search space: 402983616
Effective search space used: 402983616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)