HHsearch alignment for GI: 254780465 and conserved domain: COG0031
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism].
Probab=98.80 E-value=3.5e-06 Score=63.20 Aligned_cols=268 Identities=22% Similarity=0.237 Sum_probs=159.7
Q ss_pred CEEEECC---C----CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHCCCCCCE
Q ss_conf 6047724---8----8254662138981206823888999999997317--98207997166540467999861667855
Q gi|254780465|r 89 TPLIQLN---A----NEFLLELFHGPTLSFKDIAMQFIAELMDHILEER--DHYITIVGATSGDTGAAAIKAFAGKKRIN 159 (469)
Q Consensus 89 ~pl~~l~---~----~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~--~~~~~il~ATSGDTGsAa~~a~~~~~~i~ 159 (469)
T Consensus 12 TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~m---I~~Ae~~G~l~pG~tIVE~TSGNTGIaLA~vaa-~~Gy~ 87 (300)
T COG0031 12 TPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYM---IEDAEKRGLLKPGGTIVEATSGNTGIALAMVAA-AKGYR 87 (300)
T ss_pred CCCEEECCCCCCCCCEEEEEHHHCCCCCCHHHHHHHHH---HHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHH-HCCCC
T ss_conf 97276035688877249987201298776257799999---999998498799998997089727999999999-81992
Q ss_pred EEEECCCCCCCHHHHCCCEEECCCCEEEEEE-CCCHHHHHHHHHHHHCCHHHHCCCCC-CCCCCCCHHHCCCCHHHHHHH
Q ss_conf 9997357767603321311344787089971-79658889999997501543135831-134556544401105589999
Q gi|254780465|r 160 MYILFPEGRISVVQQKQMTTSEASNINVIAV-QSSFDDCQKIVKNLFSDVFFCHSVNL-SGINSINWARIMAQIVYYFVS 237 (469)
Q Consensus 160 v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v-~G~FDDcq~~Vk~~f~D~~~~~~~~l-~s~NSIN~~Ril~Q~vyYf~a 237 (469)
T Consensus 88 ~~ivmP~-~~S~er~~~l~a~-GAevi~t~~~~g~~~~a~~~a~el~~~~p~-~~~~~~Qf~NpaN~------~aH~~tT 158 (300)
T COG0031 88 LIIVMPE-TMSQERRKLLRAL-GAEVILTPGAPGNMKGAIERAKELAAEIPG-YAVWLNQFENPANP------EAHYETT 158 (300)
T ss_pred EEEEECC-CCCHHHHHHHHHC-CCEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEECHHHCCCCCCH------HHHHHHH
T ss_conf 8999589-8999999999982-998998379877459999999999974988-36755343896478------9897612
Q ss_pred HHHHCCC-CC-CEEEEEECCCHHHHHH--HHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCH
Q ss_conf 9874477-88-7389963465788788--667775089877058723676335677532220102345565642001340
Q gi|254780465|r 238 SIALGSP-NR-NISFSVPTGNFGDIFA--GYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIP 313 (469)
Q Consensus 238 ~~~~~~~-~~-~i~f~VPtGNfGni~A--g~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~ 313 (469)
T Consensus 159 ~~EI~~~~~~~~d~fVagvGTGGTitGvar~L-k~-~~p~i~iv~vdP~~S~~~~~---G~-g~~~-i~GIG~~~---ip 228 (300)
T COG0031 159 GPEIWQQTDGKVDAFVAGVGTGGTITGVARYL-KE-RNPNVRIVAVDPEGSVLLSG---GE-GPHK-IEGIGAGF---VP 228 (300)
T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-HH-HCCCCEEEEECCCCCCCCCC---CC-CCCC-CCCCCCCC---CC
T ss_conf 89999973799998999378526589999999-86-28983799977788855579---98-8862-77779886---77
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHH
Q ss_conf 13788999870970899999987520265105520221100012134213889999999999986395983833999999
Q gi|254780465|r 314 SNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHA 393 (469)
Q Consensus 314 SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~a 393 (469)
T Consensus 229 ~~~~~~----------------------------------~--iD~v~~V~d~~A~~~~r~La~~eGi~vG~SsGA~~~a 272 (300)
T COG0031 229 ENLDLD----------------------------------L--IDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAA 272 (300)
T ss_pred CCCCCC----------------------------------C--CCEEEEECHHHHHHHHHHHHHHHCEEECCCHHHHHHH
T ss_conf 324643----------------------------------3--6059997879999999999998391214638999999
Q ss_pred HHHHHHCC--CCCEEEEECCCCCC
Q ss_conf 99987479--98399997188434
Q gi|254780465|r 394 ALACRKSS--STPMVTLATAHPSK 415 (469)
Q Consensus 394 a~~~~~~~--~~p~VvLATAHPaK 415 (469)
T Consensus 273 A~~~a~~~~~g~~IVti~pD~G~R 296 (300)
T COG0031 273 ALKLAKELPAGKTIVTILPDSGER 296 (300)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 999998659998699997897310