HHsearch alignment for GI: 254780465 and conserved domain: COG1171
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism].
Probab=99.40 E-value=6.1e-10 Score=89.31 Aligned_cols=278 Identities=17% Similarity=0.186 Sum_probs=187.5
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHC
Q ss_conf 82546621389812068238889999999973-17982079971665404679998616678559997357767603321
Q gi|254780465|r 97 NEFLLELFHGPTLSFKDIAMQFIAELMDHILE-ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQK 175 (469)
Q Consensus 97 ~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~-~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~ 175 (469)
T Consensus 41 ~v~lK~E~lQ~~gSFK~RGA~n~---i~~-Ls~e~~~~~gViaaSaGNHaQGvA~aa~-~lGi~a~IvMP~~--tp~~Kv 113 (347)
T COG1171 41 EIYLKRENLQPVGSFKIRGAYNK---LSS-LSEEEERAAGVIAASAGNHAQGVAYAAK-RLGIKATIVMPET--TPKIKV 113 (347)
T ss_pred EEEEEECCCCCCCCCHHHHHHHH---HHH-CCHHHHHCCCEEEECCCCHHHHHHHHHH-HHCCCEEEEECCC--CCHHHH
T ss_conf 58986212753064214458899---875-6854510475699658737999999999-8099879995699--829999
Q ss_pred CCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCC-CHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 31134478708997179658889999997501543135831134556-54440110558999998744778873899634
Q gi|254780465|r 176 QMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSI-NWARIMAQIVYYFVSSIALGSPNRNISFSVPT 254 (469)
Q Consensus 176 qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSI-N~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPt 254 (469)
T Consensus 114 ~a~r~~Ga--eVil~g~~~dda~~~a~~~a~~~G------~~~i~pfD~p~viAGQGTi~lEileq~~~~--~d~v~vpv 183 (347)
T COG1171 114 DATRGYGA--EVILHGDNFDDAYAAAEELAEEEG------LTFVPPFDDPDVIAGQGTIALEILEQLPDL--PDAVFVPV 183 (347)
T ss_pred HHHHHCCC--EEEEECCCHHHHHHHHHHHHHHCC------CEEECCCCCCCEEECCCHHHHHHHHHCCCC--CCEEEEEC
T ss_conf 99985698--899979977999999999999739------788589999452534258999999846456--89899953
Q ss_pred CCHHHHHHH-HHHHHCCCCCCEEEEECCCCCHHHHHHHCC-CHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf 657887886-677750898770587236763356775322-201023455656420013401378899987097089999
Q gi|254780465|r 255 GNFGDIFAG-YMAKMMGLPIEKLIIATNENDTLVRMFDMG-MYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVK 332 (469)
Q Consensus 255 GNfGni~Ag-~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG-~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~ 332 (469)
T Consensus 184 GGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~t---f~i--------- 251 (347)
T COG1171 184 GGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLT---FEI--------- 251 (347)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHH---HHH---------
T ss_conf 86479999999999839997299981488858999997599435369878002542048887778---999---------
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC-C-CC-CEEEE
Q ss_conf 99875202651055202211000121-342138899999999999863959838339999999998747-9-98-39999
Q gi|254780465|r 333 EAFYSLENKKYFRIDSEHLQKMSLSF-SAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKS-S-ST-PMVTL 408 (469)
Q Consensus 333 ~~m~~l~~~g~~~i~~~~l~~l~~~f-~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~-~-~~-p~VvL 408 (469)
T Consensus 252 ---------------------~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~~~g~~v~~il 310 (347)
T COG1171 252 ---------------------LRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEPLQGKTVVVIL 310 (347)
T ss_pred ---------------------HHHCCCCEEEECHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf ---------------------99709968998889999999999732771136607999999996002113797599996
Q ss_pred --ECCCCCCCHHHHHHHH
Q ss_conf --7188434988899980
Q gi|254780465|r 409 --ATAHPSKFPDTVKAAS 424 (469)
Q Consensus 409 --ATAHPaKFpe~V~~Ai 424 (469)
T Consensus 311 SGgN~d~~~~~~v~~~~~ 328 (347)
T COG1171 311 SGGNIDFERLAEVLERAL 328 (347)
T ss_pred CCCCCCHHHHHHHHHCCC
T ss_conf 078879899999984051