HHsearch alignment for GI: 254780465 and conserved domain: cd00640
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=99.95 E-value=5.4e-26 Score=200.58 Aligned_cols=228 Identities=28% Similarity=0.246 Sum_probs=187.3
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 48825466213898120682388899999999731798207997166540467999861667855999735776760332
Q gi|254780465|r 95 NANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQ 174 (469)
Q Consensus 95 ~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~ 174 (469)
T Consensus 14 g~~v~~K~E~~~ptgSfK~Rga~~~v~~a~~~~~~--~~~~vv~aSsGN~g~a~A~~a~~-~G~~~~i~~p~~-~~~~k~ 89 (244)
T cd00640 14 GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL--PKGVIIESTGGNTGIALAAAAAR-LGLKCTIVMPEG-ASPEKV 89 (244)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCEEEEECCCHHHHHHHHHHHH-CCCCCEEEECCH-HHHHHH
T ss_conf 98899985589988880999999999999984886--69889992785789999998874-696633776751-567899
Q ss_pred CCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCC-CCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 13113447870899717965888999999750154313583113455-65444011055899999874477887389963
Q gi|254780465|r 175 KQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINS-INWARIMAQIVYYFVSSIALGSPNRNISFSVP 253 (469)
Q Consensus 175 ~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NS-IN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VP 253 (469)
T Consensus 90 ~~~~~~G---A~vi~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~n~~~~~g~~t~~~Ei~~Q~~~~-~~d~vv~~ 160 (244)
T cd00640 90 AQMRALG---AEVVLVPGDFDDAIALAKELAEED-----PGAYYVNQFDNPANIAGQGTIGLEILEQLGGQ-KPDAVVVP 160 (244)
T ss_pred HHHHHCC---CEEEEECCCHHHHHHHHHHHHHHC-----CCEEEECCCCCCHHHCCCCCCHHHHHHHCCCC-CCCEEEEE
T ss_conf 9887079---779998995489999999999868-----99596126668412011335299999976999-97489997
Q ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 46578878866777508987705872367633567753222010234556564200134013788999870970899999
Q gi|254780465|r 254 TGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKE 333 (469)
Q Consensus 254 tGNfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~ 333 (469)
T Consensus 161 vG~Gg~~~G~~~~~k~~~~~~~ii~vep---------------------------------------------------- 188 (244)
T cd00640 161 VGGGGNIAGIARALKELLPNVKVIGVEP---------------------------------------------------- 188 (244)
T ss_pred ECCHHHHHHHHHHHHHCCCCCEEEEEEC----------------------------------------------------
T ss_conf 6844879999999996299996999968----------------------------------------------------
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC--CCCCEEEEECC
Q ss_conf 9875202651055202211000121342138899999999999863959838339999999998747--99839999718
Q gi|254780465|r 334 AFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKS--SSTPMVTLATA 411 (469)
Q Consensus 334 ~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~--~~~p~VvLATA 411 (469)
T Consensus 189 -------------------------~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~~aa~~~~~~~~~~~~~vv~i~~g 243 (244)
T cd00640 189 -------------------------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKLGKGKTVVVILTG 243 (244)
T ss_pred -------------------------CCCEECHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf -------------------------8877999999999999999829858678999999999975873985989998379
Q ss_pred C
Q ss_conf 8
Q gi|254780465|r 412 H 412 (469)
Q Consensus 412 H 412 (469)
T Consensus 244 g 244 (244)
T cd00640 244 G 244 (244)
T ss_pred C
T ss_conf 9