HHsearch alignment for GI: 254780465 and conserved domain: cd01562
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=99.86 E-value=3e-19 Score=153.79 Aligned_cols=273 Identities=16% Similarity=0.139 Sum_probs=186.0
Q ss_pred CCEEEECC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 86047724-------88254662138981206823888999999997317982079971665404679998616678559
Q gi|254780465|r 88 VTPLIQLN-------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINM 160 (469)
Q Consensus 88 ~~pl~~l~-------~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v 160 (469)
T Consensus 17 ~TPLi~l~~l~~~~g~~l~~K~E~~nPtGS~KdR~a~~~---i~~~-~~~~~~~~vv~aSsGN~G~a~A~~aa-~~G~~~ 91 (304)
T cd01562 17 RTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNK---LLSL-SEEERAKGVVAASAGNHAQGVAYAAK-LLGIPA 91 (304)
T ss_pred CCCEEEHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHH---HHHH-HHHCCCCCEEEECCCHHHHHHHHHHH-HHCCCC
T ss_conf 986446677668869979998547898778399999999---9998-87074585699688599999999999-729975
Q ss_pred EEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHH
Q ss_conf 99735776760332131134478708997179658889999997501543135831134556544401105589999987
Q gi|254780465|r 161 YILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240 (469)
Q Consensus 161 ~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~ 240 (469)
T Consensus 92 ~Ivvp~~-~~~~k~~~i~~~GA---eVi~~~~~~~~~~~~a~~~a~~~g---~~~~~~~~--~~~~~~g~~Ti~~EI~~q 162 (304)
T cd01562 92 TIVMPET-APAAKVDATRAYGA---EVVLYGEDFDEAEAKARELAEEEG---LTFIHPFD--DPDVIAGQGTIGLEILEQ 162 (304)
T ss_pred EEECCCC-HHHHHHHHHHHCCC---CEEEECCCHHHHHHHHHHHHHHCC---CEEECCCC--CHHHHHHHCCHHHHHHHH
T ss_conf 1028853-28999999996598---389965851899999999998639---78758877--876874221179999997
Q ss_pred HCCCCCCEEEEEECCCHHHHHHHHH-HHHCCCCCCEEEE-ECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 4477887389963465788788667-7750898770587-2367633567753222010234556564200134013788
Q gi|254780465|r 241 LGSPNRNISFSVPTGNFGDIFAGYM-AKMMGLPIEKLII-ATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFER 318 (469)
Q Consensus 241 ~~~~~~~i~f~VPtGNfGni~Ag~~-Ak~MGLPI~kli~-AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfER 318 (469)
T Consensus 163 ~~---~~D~vv~~vG~Gg~~~Gi~~~lk~~~p~~-kii~Vep~g~~~~~~s~~~g~~~~~~~~~t~a~gi~~~~~~~~~~ 238 (304)
T cd01562 163 VP---DLDAVFVPVGGGGLIAGIATAVKALSPNT-KVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTF 238 (304)
T ss_pred CC---CCCEEEECCCCCHHHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHCCCCEECCCCCEEEECCCCCCCCHHHH
T ss_conf 49---99879972586168999999999729999-899994088858999998799163488673542456898657789
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHH
Q ss_conf 99987097089999998752026510552022110001213421388999999999998639598383399999999987
Q gi|254780465|r 319 LLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACR 398 (469)
Q Consensus 319 llf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~ 398 (469)
T Consensus 239 ~~---~-----------~----------------~~~--d~~v~V~d~e~~~a~~~l~~~eGi~~~ps~aa~lAal~~~~ 286 (304)
T cd01562 239 EI---I-----------R----------------KLV--DDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGK 286 (304)
T ss_pred HH---H-----------H----------------HHC--CEEEEECHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCC
T ss_conf 99---9-----------8----------------629--85999899999999999999849878177999999999580
Q ss_pred HC-CCCCEEEEEC
Q ss_conf 47-9983999971
Q gi|254780465|r 399 KS-SSTPMVTLAT 410 (469)
Q Consensus 399 ~~-~~~p~VvLAT 410 (469)
T Consensus 287 ~~~~~~~VV~vl~ 299 (304)
T cd01562 287 LDLKGKKVVVVLS 299 (304)
T ss_pred HHCCCCCEEEEEC
T ss_conf 6649992999918