HHsearch alignment for GI: 254780465 and conserved domain: cd06446
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=99.79 E-value=5.9e-17 Score=137.92 Aligned_cols=313 Identities=13% Similarity=0.018 Sum_probs=181.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEECC---C-----CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 7899899999999986304766786047724---8-----8254662138981206823888999999997317982079
Q gi|254780465|r 65 QEIKSSKLRDIVNRSYHCFRNAAVTPLIQLN---A-----NEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITI 136 (469)
Q Consensus 65 ~~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~---~-----~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~i 136 (469)
T Consensus 12 ~~~~~~~~~~e~~~~~~~~~gr-pTPL~~a~~L~~~lg~a~iy~K~E~~NPTGSfKdR~a~~~v~----~A~~~G~~~vi 86 (365)
T cd06446 12 KERYDPDFPEELRELYKDYVGR-PTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQAL----LAKRMGKKRVI 86 (365)
T ss_pred HHHCCCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH----HHHHCCCCEEE
T ss_conf 9854915689999999862899-976776888887508866999866889888750767999999----99980985487
Q ss_pred EECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCH--HHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCH---HHH
Q ss_conf 97166540467999861667855999735776760--3321311344787089971796588899999975015---431
Q gi|254780465|r 137 VGATSGDTGAAAIKAFAGKKRINMYILFPEGRISV--VQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDV---FFC 211 (469)
Q Consensus 137 l~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~--~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~---~~~ 211 (469)
T Consensus 87 a~t~aGN~g~a~A~~aA-~~Gl~~~I~mp~~~~~~~~~~~~~m~~y-GA~--Vv~v~~~~gtl~~ai~ea~~~~~~~~~~ 162 (365)
T cd06446 87 AETGAGQHGVATATACA-LFGLECEIYMGAVDVERQPLNVFRMELL-GAE--VVPVPSGSGTLKDAISEAIRDWVTNVED 162 (365)
T ss_pred ECCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCHHHHHHHHC-CCE--EEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 24685299999999999-8699479994477423341789999975-987--9996589820899999999999956453
Q ss_pred CCCCCCCCCCCCHHH---CCCCHHHHHHHHHHHCCC--CCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCC-CCH
Q ss_conf 358311345565444---011055899999874477--88738996346578878866777508987705872367-633
Q gi|254780465|r 212 HSVNLSGINSINWAR---IMAQIVYYFVSSIALGSP--NRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNE-NDT 285 (469)
Q Consensus 212 ~~~~l~s~NSIN~~R---il~Q~vyYf~a~~~~~~~--~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN~-Ndi 285 (469)
T Consensus 163 ~~y~~gs~~~p~p~~~~v~~~q~tig~Ei~eQl~~~~g~~PD~vv~pvGgGgn~~G~~~~F-~~~~~~~~igve~~g~~~ 241 (365)
T cd06446 163 THYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPF-INDKDVKLIGVEAGGCGL 241 (365)
T ss_pred CEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHEECCC-CCCCCCCEEEECCCCCCC
T ss_conf 4002563037898713777643389999999999962999889997878764212021145-557653167653456776
Q ss_pred H----HHHHHCCC---------H-------HCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 5----67753222---------0-------10234556564200134013788999870970899999987520265105
Q gi|254780465|r 286 L----VRMFDMGM---------Y-------RPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFR 345 (469)
Q Consensus 286 L----~rf~~tG~---------y-------~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~ 345 (469)
T Consensus 242 ~~~~~aa~~~~g~~g~~p~~~~~~~~~~~~~~~-~~~siA~gLr~--pg~gp~~~~----------------l~~~g~-- 300 (365)
T cd06446 242 ETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIV-PPHSISAGLDY--PGVGPEHAY----------------LKDSGR-- 300 (365)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC-CCCCCCCCCCC--CCCCHHHHH----------------HHHCCC--
T ss_conf 668752000289755240066676236568886-88544457677--887779999----------------997298--
Q ss_pred CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHH--HCCCCCEEEEECCCCCCCHHHH
Q ss_conf 52022110001213421388999999999998639598383399999999987--4799839999718843498889
Q gi|254780465|r 346 IDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACR--KSSSTPMVTLATAHPSKFPDTV 420 (469)
Q Consensus 346 i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~--~~~~~p~VvLATAHPaKFpe~V 420 (469)
T Consensus 301 ------------~~~~~VsD~Eil~a~~~La~~EGIf~ep~sa~avA~~~kla~~~~~~~~VV~~ltG~GlKD~~~v 365 (365)
T cd06446 301 ------------VEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKLGKEKVIVVNLSGRGDKDLQTV 365 (365)
T ss_pred ------------EEEEEECHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
T ss_conf ------------49998699999999999998379555535799999999998774999879999578985676559