HHsearch alignment for GI: 254780465 and conserved domain: cd06446

>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=99.79  E-value=5.9e-17  Score=137.92  Aligned_cols=313  Identities=13%  Similarity=0.018  Sum_probs=181.1

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCEEEECC---C-----CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             7899899999999986304766786047724---8-----8254662138981206823888999999997317982079
Q gi|254780465|r   65 QEIKSSKLRDIVNRSYHCFRNAAVTPLIQLN---A-----NEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITI  136 (469)
Q Consensus        65 ~~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~---~-----~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~i  136 (469)
T Consensus        12 ~~~~~~~~~~e~~~~~~~~~gr-pTPL~~a~~L~~~lg~a~iy~K~E~~NPTGSfKdR~a~~~v~----~A~~~G~~~vi   86 (365)
T cd06446          12 KERYDPDFPEELRELYKDYVGR-PTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQAL----LAKRMGKKRVI   86 (365)
T ss_pred             HHHCCCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH----HHHHCCCCEEE
T ss_conf             9854915689999999862899-976776888887508866999866889888750767999999----99980985487


Q ss_pred             EECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCH--HHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCH---HHH
Q ss_conf             97166540467999861667855999735776760--3321311344787089971796588899999975015---431
Q gi|254780465|r  137 VGATSGDTGAAAIKAFAGKKRINMYILFPEGRISV--VQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDV---FFC  211 (469)
Q Consensus       137 l~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~--~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~---~~~  211 (469)
T Consensus        87 a~t~aGN~g~a~A~~aA-~~Gl~~~I~mp~~~~~~~~~~~~~m~~y-GA~--Vv~v~~~~gtl~~ai~ea~~~~~~~~~~  162 (365)
T cd06446          87 AETGAGQHGVATATACA-LFGLECEIYMGAVDVERQPLNVFRMELL-GAE--VVPVPSGSGTLKDAISEAIRDWVTNVED  162 (365)
T ss_pred             ECCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCHHHHHHHHC-CCE--EEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             24685299999999999-8699479994477423341789999975-987--9996589820899999999999956453


Q ss_pred             CCCCCCCCCCCCHHH---CCCCHHHHHHHHHHHCCC--CCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCC-CCH
Q ss_conf             358311345565444---011055899999874477--88738996346578878866777508987705872367-633
Q gi|254780465|r  212 HSVNLSGINSINWAR---IMAQIVYYFVSSIALGSP--NRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNE-NDT  285 (469)
Q Consensus       212 ~~~~l~s~NSIN~~R---il~Q~vyYf~a~~~~~~~--~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN~-Ndi  285 (469)
T Consensus       163 ~~y~~gs~~~p~p~~~~v~~~q~tig~Ei~eQl~~~~g~~PD~vv~pvGgGgn~~G~~~~F-~~~~~~~~igve~~g~~~  241 (365)
T cd06446         163 THYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPF-INDKDVKLIGVEAGGCGL  241 (365)
T ss_pred             CEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHEECCC-CCCCCCCEEEECCCCCCC
T ss_conf             4002563037898713777643389999999999962999889997878764212021145-557653167653456776


Q ss_pred             H----HHHHHCCC---------H-------HCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             5----67753222---------0-------10234556564200134013788999870970899999987520265105
Q gi|254780465|r  286 L----VRMFDMGM---------Y-------RPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFR  345 (469)
Q Consensus       286 L----~rf~~tG~---------y-------~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~  345 (469)
T Consensus       242 ~~~~~aa~~~~g~~g~~p~~~~~~~~~~~~~~~-~~~siA~gLr~--pg~gp~~~~----------------l~~~g~--  300 (365)
T cd06446         242 ETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIV-PPHSISAGLDY--PGVGPEHAY----------------LKDSGR--  300 (365)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC-CCCCCCCCCCC--CCCCHHHHH----------------HHHCCC--
T ss_conf             668752000289755240066676236568886-88544457677--887779999----------------997298--


Q ss_pred             CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHH--HCCCCCEEEEECCCCCCCHHHH
Q ss_conf             52022110001213421388999999999998639598383399999999987--4799839999718843498889
Q gi|254780465|r  346 IDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACR--KSSSTPMVTLATAHPSKFPDTV  420 (469)
Q Consensus       346 i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~--~~~~~p~VvLATAHPaKFpe~V  420 (469)
T Consensus       301 ------------~~~~~VsD~Eil~a~~~La~~EGIf~ep~sa~avA~~~kla~~~~~~~~VV~~ltG~GlKD~~~v  365 (365)
T cd06446         301 ------------VEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKLGKEKVIVVNLSGRGDKDLQTV  365 (365)
T ss_pred             ------------EEEEEECHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
T ss_conf             ------------49998699999999999998379555535799999999998774999879999578985676559