HHsearch results for GI: 254780465 and protein with PDBid: 1v8z_A
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*
Probab=99.64 E-value=1.2e-13 Score=113.36 Aligned_cols=344 Identities=15% Similarity=0.074 Sum_probs=190.2
Q ss_pred CCCCCCCCCCC-CCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECC--------
Q ss_conf 87863286107-888988998770999899999999875157899899999999986304766786047724--------
Q gi|254780465|r 25 TDGGLYIPKYI-PRLSEKEIKDLRGLSYQEIALFIFRLFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLN-------- 95 (469)
Q Consensus 25 ~DGGL~vP~~~-p~~~~~~~~~~~~~sy~e~a~~il~~f~~~~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~-------- 95 (469)
.-||-||||.+ |.| ++|.. .|.++-.. .-|. .+|.+++.+ |-. .++||.++.
T Consensus 5 ~~~~~~~~~~l~~~l--~~l~~----~~~~~~~~--~~f~------~~~~~~~~~-y~g----rpTPL~~~~~Ls~~lgg 65 (388)
T 1v8z_A 5 EFGGQYVPETLIEPL--KELEK----AYKRFKDD--EEFN------RQLNYYLKT-WAG----RPTPLYYAKRLTEKIGG 65 (388)
T ss_dssp TEECCCCCHHHHHHH--HHHHH----HHHHHHTC--HHHH------HHHHHHHHH-TTC----CSCCEEECHHHHHHHTS
T ss_pred CCCCEECCHHHHHHH--HHHHH----HHHHHHCC--HHHH------HHHHHHHHH-CCC----CCCCCEEHHHHHHHCCC
T ss_conf 829884879899999--99999----99999649--8999------999998751-489----99704175877876289
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCC--HHH
Q ss_conf 882546621389812068238889999999973179820799716654046799986166785599973577676--033
Q gi|254780465|r 96 ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRIS--VVQ 173 (469)
Q Consensus 96 ~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS--~~Q 173 (469)
.+.|+=-=+.-||+||||.++..+.. .+++.++...|.++|+|.+|+|++.+.+ .-++++.|+-|..... ..+
T Consensus 66 ~~IylK~E~lnptGS~K~R~a~~~i~----~A~~~G~~~~v~~tsaGn~g~a~A~aaa-~~g~~~~i~m~~~~~~~~~~~ 140 (388)
T 1v8z_A 66 AKIYLKREDLVHGGAHKTNNAIGQAL----LAKFMGKTRLIAETGAGQHGVATAMAGA-LLGMKVDIYMGAEDVERQKMN 140 (388)
T ss_dssp SEEEEEEGGGSTTSBTHHHHHHHHHH----HHHHTTCCEEEEEESSSHHHHHHHHHHH-HTTCEEEEEEEHHHHTTCHHH
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHH----HHHHCCCCCEEEEECCCHHHHHHHHHHH-HCCCCCEECCCCCHHHHHHHH
T ss_conf 75999978888888753769999999----9997599856753152068999999999-729872002333336555789
Q ss_pred HCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHC---CCCCCC-CCCCCHH--HCCCCHHHHHHHHHHHCC--CC
Q ss_conf 213113447870899717965888999999750154313---583113-4556544--401105589999987447--78
Q gi|254780465|r 174 QKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCH---SVNLSG-INSINWA--RIMAQIVYYFVSSIALGS--PN 245 (469)
Q Consensus 174 ~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~---~~~l~s-~NSIN~~--Ril~Q~vyYf~a~~~~~~--~~ 245 (469)
..+|-.. |- .++.|.+..+++...+.+...+..-.. .....+ ++.-++. -...|.+--.....|+.. ..
T Consensus 141 v~~~~~~-GA--~V~~v~~g~~tl~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~q~~ig~Ei~~Q~~~~~g~ 217 (388)
T 1v8z_A 141 VFRMKLL-GA--NVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQ 217 (388)
T ss_dssp HHHHHHT-TC--EEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHC-CC--EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999976-98--18995688542899999999999974776530355335888642666525589899999999996399
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEC--CCC---CHHHHHHHCCC---HHC----------CCCCCCCCCC
Q ss_conf 87389963465788788667775089877058723--676---33567753222---010----------2345565642
Q gi|254780465|r 246 RNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIAT--NEN---DTLVRMFDMGM---YRP----------EIVMETTSPA 307 (469)
Q Consensus 246 ~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~At--N~N---diL~rf~~tG~---y~~----------~~~~~T~Sps 307 (469)
.+-.+++|.|+-||+.+.+.++..--.+ ++|... -.. ....--+..|. ... ....+|.+.+
T Consensus 218 ~pD~vv~~vGgG~~~~G~~~~f~~~~~v-~~igve~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 296 (388)
T 1v8z_A 218 LPDVIVACVGGGSNAMGIFYPFVNDKKV-KLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIA 296 (388)
T ss_dssp CCSEEEEECSSSHHHHHHHGGGTTCTTS-EEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSS
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 9978997788717889999987308984-699995577764206666664058754445532035448777517874333
Q ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCH
Q ss_conf 00134013788999870970899999987520265105520221100012134213889999999999986395983833
Q gi|254780465|r 308 MDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHT 387 (469)
Q Consensus 308 MDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHT 387 (469)
-.+..+..-.... .+.+. + .-....|+|+|++++++.+.+..|++..|-+
T Consensus 297 ~~l~~~~~g~~~~------------~~~~~----~--------------~~~~~~VtD~Ea~~a~~~La~~EGI~~~~es 346 (388)
T 1v8z_A 297 PGLDYPGVGPEHA------------YLKKI----Q--------------RAEYVTVTDEEALKAFHELSRTEGIIPALES 346 (388)
T ss_dssp TTSCCSBCCHHHH------------HHHHT----T--------------SEEEEEEEHHHHHHHHHHHHHHHSCCBCHHH
T ss_pred CCCCCCCCCHHHH------------HHHHC----C--------------CEEEEEECHHHHHHHHHHHHHHCCCEECCHH
T ss_conf 4445576537889------------99864----8--------------6389998999999999999997699657789
Q ss_pred HHHHHHHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHCC
Q ss_conf 9999999998747--99839999718843498889998087
Q gi|254780465|r 388 AVGIHAALACRKS--SSTPMVTLATAHPSKFPDTVKAASGI 426 (469)
Q Consensus 388 AvG~~aa~~~~~~--~~~p~VvLATAHPaKFpe~V~~Aig~ 426 (469)
|.+++++.+.... ++..+|++-|.|--|-.++|.+.+|.
T Consensus 347 a~Ala~a~~la~~l~~~~~VVv~lsG~G~kD~~~~~~~~g~ 387 (388)
T 1v8z_A 347 AHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVSGN 387 (388)
T ss_dssp HHHHHHHHHHHHTSCTTCEEEEEECBBSGGGHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 99999999986770987979999688855019999997379