RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus
Liberibacter asiaticus str. psy62]
         (469 letters)



>gnl|CDD|107203 cd01560, Thr-synth_2, Threonine synthase catalyzes the final step
           of threonine biosynthesis. The conversion of
           O-phosphohomoserine into threonine and inorganic
           phosphate is pyridoxal 5'-phosphate dependent. The
           Thr-synth_1 CD includes members from higher plants,
           cyanobacteria, archaebacteria and eubacterial groups.
           This CD, Thr-synth_2, includes enzymes from fungi and
           eubacterial groups, as well as, metazoan threonine
           synthase-like proteins..
          Length = 460

 Score =  586 bits (1513), Expect = e-168
 Identities = 221/460 (48%), Positives = 305/460 (66%), Gaps = 4/460 (0%)

Query: 2   KYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFRL 61
           KY+STR  +  + F + +LSGLA DGGLY+P+ +P+LS +EI    GLSYQE+A  +  L
Sbjct: 1   KYVSTRGGNPGVSFSEALLSGLAPDGGLYVPEELPKLSAEEIASWSGLSYQELAFEVLSL 60

Query: 62  FIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIAE 121
           FIG EI    L+ +++R+Y  FR+  + PL+QL  N ++LELFHGPTL+FKD+A+QF+  
Sbjct: 61  FIGDEIPEDDLKSLIDRAYSFFRHPDIAPLVQLGDNLYVLELFHGPTLAFKDMALQFLGR 120

Query: 122 LMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSE 181
           L+++ L+ R+  ITI+ ATSGDTG+AAI+ F GK  +++ +L+P+G +S +Q+ QMTT  
Sbjct: 121 LLEYFLKRRNERITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMTTLP 180

Query: 182 ASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIAL 241
           A N++V+AV+  FDDCQ +VK LF+D  F   + LS  NSINWARI+AQIVYYF + + L
Sbjct: 181 ADNVHVVAVEGDFDDCQSLVKALFADEDFNKKLKLSSANSINWARILAQIVYYFYAYLQL 240

Query: 242 GSP--NRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRP-E 298
                   + FSVPTGNFG+I AGY AK MGLPI+KLI+ATNEND L R F  G Y   E
Sbjct: 241 LKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRE 300

Query: 299 IVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSF 358
            + +T SPAMDI   SNFERLLF ++GR+   VK      E   +  +  E L+K+   F
Sbjct: 301 SLKQTLSPAMDILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDF 360

Query: 359 SAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPD 418
           S+   S E+    I+ V E++ YL+DPHTAVG+ AA   RKS  TP V L+TAHP+KFP+
Sbjct: 361 SSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAAERVRKSPGTPGVVLSTAHPAKFPE 420

Query: 419 TVKAASGIVP-DCPISLEQMMRRPENCKVMNKNIDEIKKF 457
            VK A G  P + P  LE +    +  + +  + + +K  
Sbjct: 421 AVKEALGEEPVELPEELEGLEDLEKRHEDLLADKELLKSH 460


>gnl|CDD|30844 COG0498, ThrC, Threonine synthase [Amino acid transport and
           metabolism].
          Length = 411

 Score =  344 bits (884), Expect = 3e-95
 Identities = 149/466 (31%), Positives = 212/466 (45%), Gaps = 62/466 (13%)

Query: 1   MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR 60
           MKY+S R +     F   +L GL  D GL++P   P  S +EI  L GLSY E+A     
Sbjct: 1   MKYVSLRCLKCGREFSQALLQGLCPDCGLFLPAEYPYFSLEEIDKLLGLSYPELAWRYLE 60

Query: 61  LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120
           L    EI +  L +     Y     A   PL  LN N ++ EL H PT SFKD  M  + 
Sbjct: 61  LLPVGEIPAVSLGEGGTPLYKAP--ALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLV 118

Query: 121 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS 180
            L   +        TI+ A+SG+TG A+  A+A +  + +++L+P+G++S  +  QM T 
Sbjct: 119 SLAKELG-----AKTILCASSGNTG-ASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTL 172

Query: 181 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240
            A   +VIAV  +FDD Q++VK   +         LS +NSIN  R+  Q  Y F  +  
Sbjct: 173 GA---HVIAVDGNFDDAQELVKEAANR-----EGLLSAVNSINPYRLEGQKTYAFEIAEQ 224

Query: 241 LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRP--- 297
           LG         VP GN G++ A Y     GLPI K+  A N N      F  G+Y     
Sbjct: 225 LG-WKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEG 283

Query: 298 EIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLS 357
               ET +PAMDI  PSN+ER LF +     L                            
Sbjct: 284 RETPETIAPAMDIGNPSNWERALFALRESGGL---------------------------- 315

Query: 358 FSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRK---SSSTPMVTLATAHPS 414
             A   S E++   IK + E+   L++PH+AV + A L  R+        +V + T H  
Sbjct: 316 --AVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGL 373

Query: 415 KFPDTVKAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKK 460
           KFPDTV+ A       P  L ++   P   +  +   + +KK+I +
Sbjct: 374 KFPDTVEEA-------PAELAEIPELPLRVEDADL--EALKKYILQ 410


>gnl|CDD|37827 KOG2616, KOG2616, KOG2616, Pyridoxalphosphate-dependent
           enzyme/predicted threonine synthase [Amino acid
           transport and metabolism].
          Length = 266

 Score =  174 bits (441), Expect = 6e-44
 Identities = 98/322 (30%), Positives = 154/322 (47%), Gaps = 68/322 (21%)

Query: 158 INMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLS 217
           ++++IL P+GR S +Q+ QMTT    N++V  V+ +FD+CQ  VK +F DV F       
Sbjct: 1   VSVFILLPKGRCSPIQELQMTTVLDQNVHVFGVEGNFDECQDPVKTIFGDVEF------- 53

Query: 218 GINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLI 277
                                  +G P R                            KL+
Sbjct: 54  ---------------------AKMGLPIR----------------------------KLV 64

Query: 278 IATNENDTLVRMFDMGMY-RPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFY 336
           IATNEND L R    G Y   E V  T SPAMDI + SNFER+L+ ++G +S + +    
Sbjct: 65  IATNENDILHRFVKTGDYELSEKVAATLSPAMDILVSSNFERVLWLLAGSDSQITRALMN 124

Query: 337 SLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALA 396
             E     ++  E  +K+S  F+++R S E+    IK + E ++Y++DPHTAV ++    
Sbjct: 125 EFERTGSVQVPKELHEKLSEDFTSERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYR 184

Query: 397 C--RKSSSTPMVTLATAHPSKFPDTVKAA--------SGIVPDCPISLEQMMRRPENCKV 446
              +   S P + L+TAHP+KF + V AA        + +    P  L  +MRR +N   
Sbjct: 185 QIDKTQPSIPYICLSTAHPAKFAEAVNAALSTPESPYNFVALVHPEELCTLMRREKNWMF 244

Query: 447 MNK-NIDEIKKFIKKRNMESKI 467
           M + +I+++K+ I+   + +K 
Sbjct: 245 MLRADIEDLKRQIESHLLNTKQ 266


>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
           (fold type II); this family of pyridoxal phosphate
           (PLP)-dependent enzymes catalyzes beta-replacement and
           beta-elimination reactions. This CD corresponds to
           aminocyclopropane-1-carboxylate deaminase (ACCD),
           tryptophan synthase beta chain (Trp-synth_B),
           cystathionine beta-synthase (CBS), O-acetylserine
           sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
           threonine dehydratase (Thr-dehyd), diaminopropionate
           ammonia lyase (DAL), and threonine synthase (Thr-synth).
           ACCD catalyzes the conversion of
           1-aminocyclopropane-1-carboxylate  to alpha-ketobutyrate
           and ammonia. Tryptophan synthase folds into a tetramer,
           where the beta chain is the catalytic PLP-binding
           subunit and catalyzes the formation of L-tryptophan from
           indole and L-serine. CBS is a tetrameric hemeprotein
           that catalyzes condensation of serine and homocysteine
           to cystathionine. CS is a homodimer that catalyzes the
           formation of L-cysteine from O-acetyl-L-serine.
           Ser-dehyd catalyzes the conversion of L- or D-serine  to
           pyruvate and ammonia. Thr-dehyd is active as a homodimer
           and catalyzes the conversion of L-threonine to
           2-oxobutanoate and ammonia. DAL is also a homodimer and
           catalyzes the alpha, beta-elimination reaction of both
           L- and D-alpha, beta-diaminopropionate to form pyruvate
           and ammonia. Thr-synth catalyzes the formation of
           threonine and inorganic phosphate from
           O-phosphohomoserine..
          Length = 244

 Score =  132 bits (335), Expect = 2e-31
 Identities = 57/202 (28%), Positives = 78/202 (38%), Gaps = 21/202 (10%)

Query: 89  TPLIQLN-------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATS 141
           TPL++L        AN +L   F  PT SFKD     +  L +   E +     I+ +T 
Sbjct: 1   TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEE--EGKLPKGVIIESTG 58

Query: 142 GDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIV 201
           G+TG A   A A +  +   I+ PEG  S  +  QM    A    V+ V   FDD   + 
Sbjct: 59  GNTGIALAAAAA-RLGLKCTIVMPEGA-SPEKVAQM---RALGAEVVLVPGDFDDAIALA 113

Query: 202 KNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNI-SFSVPTGNFGDI 260
           K L  +    + VN       N A I  Q        I      +   +  VP G  G+I
Sbjct: 114 KELAEEDPGAYYVN----QFDNPANIAGQGTIGL--EILEQLGGQKPDAVVVPVGGGGNI 167

Query: 261 FAGYMAKMMGLPIEKLIIATNE 282
                A    LP  K+I    E
Sbjct: 168 AGIARALKELLPNVKVIGVEPE 189



 Score = 37.1 bits (87), Expect = 0.012
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 366 EDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRK--SSSTPMVTLATAH 412
           E+    I+ +  +   LV+P +A  + AAL   K       +V + T  
Sbjct: 196 EEALEAIRLLAREEGILVEPSSAAALAAALKLAKKLGKGKTVVVILTGG 244


>gnl|CDD|144031 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members of
           this family are all pyridoxal-phosphate dependent
           enzymes. This family includes: serine dehydratase
           EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
           tryptophan synthase beta chain EC:4.2.1.20, threonine
           synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8,
           cystathionine beta-synthase EC:4.2.1.22,
           1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
          Length = 251

 Score = 68.5 bits (168), Expect = 4e-12
 Identities = 54/201 (26%), Positives = 79/201 (39%), Gaps = 42/201 (20%)

Query: 89  TPLIQL-------NANEFL-LELFHGPTLSFKD-IAMQFIAELMDHILEERDHYITIVGA 139
           TPL++L        A  +L LE  + PT SFKD  A   +           +   T+V A
Sbjct: 8   TPLVRLLLLGGLGGARVYLKLESLN-PTGSFKDRGAANLLLRA------LEEGGKTVVEA 60

Query: 140 TSGDTGAAAIKAFAGKKR-INMYILFPEGRISVVQQKQMTTSEASNIN-VIAVQSSFDDC 197
           +SG+TG A   A A  +  + + I+ PEG  S  +   M    A  I  V  V   +DD 
Sbjct: 61  SSGNTGRAL--AAAAARLGLKVTIVVPEG-ASPGKLLLMRALGAEVILVVSDVGGDYDDA 117

Query: 198 QKIVKNLFSDVFFCHSVNLSGINSINWA--RIMAQIVYYFVSSIAL-------GSPNRNI 248
            ++ +    +      + L+G NS N         I  Y   +I L       G P+   
Sbjct: 118 LELAEEAAEE------LALAGGNSYNIGDQYDPNVIAGYG--TIGLEILEQLGGVPDA-- 167

Query: 249 SFSVPTGNFGDIFAGYMAKMM 269
              VP G  G + AG    + 
Sbjct: 168 -VVVPVG-GGGLAAGIARGLK 186


>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate
           (PLP) dependent enzyme that catalyses the last reaction
           in the synthesis of  threonine from aspartate. It
           proceeds by converting O-phospho-L-homoserine (OPH) into
           threonine and inorganic phosphate. In plants, OPH is an
           intermediate between the methionine and
           threonine/isoleucine pathways. Thus threonine synthase
           competes for OPH with cystathionine-gamma-synthase, the
           first enzyme in the methionine pathway. These enzymes
           are in general dimers. Members of this CD, Thr-synth_1,
           are widely distributed in bacteria, archaea and higher
           plants..
          Length = 324

 Score = 64.2 bits (157), Expect = 8e-11
 Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 34/219 (15%)

Query: 107 PTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGA--AAIKAFAGKKRINMYILF 164
           PT SFKD  M      +    E       +  A++G+T A  AA  A AG   I   +  
Sbjct: 49  PTGSFKDRGM---TVAVSKAKELG--VKAVACASTGNTSASLAAYAARAG---IKCVVFL 100

Query: 165 PEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINW 224
           P G  ++ +  Q     A    V+AV+ +FDD  ++V+ L  +    + + LS  NS+N 
Sbjct: 101 PAG-KALGKLAQA---LAYGATVLAVEGNFDDALRLVRELAEE----NWIYLS--NSLNP 150

Query: 225 ARIMAQ--IVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMA----KMMGLPIE---K 275
            R+  Q  I +     +    P+  +   VP GN G+I A +      K +GL I+   +
Sbjct: 151 YRLEGQKTIAFEIAEQLGWEVPDYVV---VPVGNGGNITAIWKGFKELKELGL-IDRLPR 206

Query: 276 LIIATNEN-DTLVRMFDMGMYRPEIVMETTSPAMDIQIP 313
           ++    E    +VR F  G    E V    + A  I+I 
Sbjct: 207 MVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIG 245


>gnl|CDD|30381 COG0031, CysK, Cysteine synthase [Amino acid transport and
           metabolism].
          Length = 300

 Score = 32.4 bits (74), Expect = 0.30
 Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 18/101 (17%)

Query: 89  TPLIQLNANEFL--------LELFHGPTLSFKD-IAMQFI--AELMDHILEERDHYITIV 137
           TPL++LN             LE F+ P  S KD IA+  I  AE    +        TIV
Sbjct: 12  TPLVRLNRLSPGTGVEIYAKLESFN-PGGSVKDRIALYMIEDAEKRGLLKPGG----TIV 66

Query: 138 GATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMT 178
            ATSG+TG  A+   A  K   + I+ PE  +S  ++K + 
Sbjct: 67  EATSGNTG-IALAMVAAAKGYRLIIVMPET-MSQERRKLLR 105


>gnl|CDD|38790 KOG3583, KOG3583, KOG3583, Uncharacterized conserved protein
           [Function unknown].
          Length = 279

 Score = 30.1 bits (67), Expect = 1.2
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 10/122 (8%)

Query: 83  FRNAAVTPL-IQLNANEFLLELFHGPTLSFK-DIAMQFIAELMDHILEERDHYITIVGAT 140
            R+  +    +Q   +E L     G    F   +   ++    D  +E  +  +      
Sbjct: 70  LRSHVLVTQRLQYEPDETLQRATEGRVPVFSHALVPDYLRTKPDPEMENEEGQL------ 123

Query: 141 SGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKI 200
             D  AAA  A A  K+I  Y     G ++ + +     +E++    I    + DD  K+
Sbjct: 124 --DGEAAAKSADAAVKQIAAYNKNISGLLNHLSKVDREHTESAIEKPIQQTYNRDDTAKL 181

Query: 201 VK 202
           V 
Sbjct: 182 VA 183


>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
           beta-synthase (CBS) and Cysteine synthase. CBS is a
           unique heme-containing enzyme that catalyzes a pyridoxal
           5'-phosphate (PLP)-dependent condensation of serine and
           homocysteine to give cystathionine. Deficiency of CBS
           leads to homocystinuria, an inherited disease of sulfur
           metabolism characterized by increased levels of the
           toxic metabolite homocysteine. Cysteine synthase on the
           other hand catalyzes the last step of cysteine
           biosynthesis.  This subgroup also includes an
           O-Phosphoserine sulfhydrylase found in hyperthermophilic
           archaea which produces L-cysteine from sulfide and the
           more thermostable O-phospho-L-serine..
          Length = 291

 Score = 30.2 bits (69), Expect = 1.4
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 17/76 (22%)

Query: 89  TPLIQLNA------NEFLLEL-FHGPTLSFKD-IAMQFIAELMDH-ILEERDHYITIVGA 139
           TPL++LN        E   +L F  P  S KD IA+  I +     +L+      TI+  
Sbjct: 3   TPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGT---TIIEP 59

Query: 140 TSGDTG-----AAAIK 150
           TSG+TG      AA K
Sbjct: 60  TSGNTGIGLAMVAAAK 75


>gnl|CDD|37835 KOG2624, KOG2624, KOG2624, Triglyceride lipase-cholesterol esterase
           [Lipid transport and metabolism].
          Length = 403

 Score = 30.0 bits (67), Expect = 1.4
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 27/147 (18%)

Query: 110 SFKDIAMQFIAELMDHILEERDHY-ITIVGATSGDTG--AAAIKAFAGKKRINMYIL--- 163
           S+ ++    +  ++D+ILE+     +  VG + G T       +     K+I  +I    
Sbjct: 138 SWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAP 197

Query: 164 --FPEGRISVVQQKQMTTSEA---------------SNINVIAVQSSFDDCQKIVKNLFS 206
             FP+   S++ +       A               SN+ +           KI  +L S
Sbjct: 198 AAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCS 257

Query: 207 DVFFCHSVNLSGINSINWARIMAQIVY 233
           +  F     L G NS NW   +  +  
Sbjct: 258 NFLF----LLVGWNSNNWNTTLLPVYL 280


>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
           catalyze similar beta-elimination reactions.  The Lyase
           class I family contains class II fumarase, aspartase,
           adenylosuccinate lyase (ASL), argininosuccinate lyase
           (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
           cycloisomerase (pCMLE), and related proteins. It belongs
           to the Lyase_I superfamily. Proteins of this family for
           the most part catalyze similar beta-elimination
           reactions in which a C-N or C-O bond is cleaved with the
           release of fumarate as one of the products. These
           proteins are active as tetramers. The four active sites
           of the homotetrameric enzyme are each formed by residues
           from three different subunits.
          Length = 325

 Score = 29.0 bits (66), Expect = 3.0
 Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 4/65 (6%)

Query: 92  IQLNANEFLLELFHG---PTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAA 148
           I    +E L  +         S     M     L +   E    Y+   G +S D    A
Sbjct: 29  ILAALDEILEGIAADQVEQEGSGTHDVMAVEEVLAERAGELNGGYVHT-GRSSNDIVDTA 87

Query: 149 IKAFA 153
           ++   
Sbjct: 88  LRLAL 92


>gnl|CDD|34959 COG5400, COG5400, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 205

 Score = 28.4 bits (63), Expect = 4.6
 Identities = 13/30 (43%), Positives = 13/30 (43%)

Query: 138 GATSGDTGAAAIKAFAGKKRINMYILFPEG 167
           G TSG       KAF      N YIL  EG
Sbjct: 62  GETSGGLAKVVEKAFQSYGLPNGYILGEEG 91


>gnl|CDD|144818 pfam01366, PRTP, Herpesvirus processing and transport protein.  The
           members of this family are associate with capsid
           intermediates during packaging of the virus.
          Length = 635

 Score = 28.4 bits (64), Expect = 4.9
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 284 DTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKY 343
           +  V++ +  + R   +   T  A +   P  F+   F I  +NSL              
Sbjct: 498 EEAVKLLNGFLARRRFLALVTWEAGNRGSPEAFDNHKF-I--KNSLYRH----------- 543

Query: 344 FRIDSEHLQKMSLSF 358
            R+D EHL  ++  F
Sbjct: 544 -RLDPEHLPSLTHQF 557


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,491,761
Number of extensions: 294967
Number of successful extensions: 837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 817
Number of HSP's successfully gapped: 30
Length of query: 469
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 372
Effective length of database: 4,167,664
Effective search space: 1550371008
Effective search space used: 1550371008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)