RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus
Liberibacter asiaticus str. psy62]
(469 letters)
>gnl|CDD|181710 PRK09225, PRK09225, threonine synthase; Validated.
Length = 462
Score = 638 bits (1649), Expect = 0.0
Identities = 217/462 (46%), Positives = 302/462 (65%), Gaps = 4/462 (0%)
Query: 1 MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR 60
MKYISTR + F + +L GLA DGGLY+P+ +P+LS +EI L GLSY E+A I
Sbjct: 1 MKYISTRGNAPQVSFSEAVLQGLAPDGGLYVPEELPKLSAEEIDALLGLSYAELAFEILS 60
Query: 61 LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120
F+G +I L+ I+ R+Y F + A+ PL+QL+ N ++LELFHGPTL+FKD A+QF+A
Sbjct: 61 AFVGDDIPEDDLKAIIARAYTTFDHPAIAPLVQLDDNLYVLELFHGPTLAFKDFALQFLA 120
Query: 121 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS 180
+L++++L+ ITI+GATSGDTG+AA +AF GK + + IL+P+G++S VQ+KQMTT
Sbjct: 121 QLLEYVLKGEK--ITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMTTL 178
Query: 181 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240
+ NI+V+AV+ +FDDCQ +VK F+D + LS NSIN R++AQIVYYF + +
Sbjct: 179 QGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANSINIGRLLAQIVYYFYAYLQ 238
Query: 241 LG-SPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEI 299
LG ++FSVP+GNFG+I AGY AK MGLPI++LI+ATNEND L R G+Y P
Sbjct: 239 LGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNENDVLTRFLKTGVYDPRP 298
Query: 300 VMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFS 359
+ T SPAMDI + SNFERLLF++ GR++ V+E LE K + + E L + FS
Sbjct: 299 TVATLSPAMDISVSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFS 358
Query: 360 AKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDT 419
A S E+ + I+ V E+ YL+DPHTAV AA P V L+TAHP+KFP+
Sbjct: 359 AGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAAREYLD-PGEPGVVLSTAHPAKFPEV 417
Query: 420 VKAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKR 461
V+ A G P P +L + RP V+ + +K F+ +
Sbjct: 418 VEEALGEEPPLPAALAGLEDRPLRSTVLPADFAALKAFLLEH 459
>gnl|CDD|161791 TIGR00260, thrC, threonine synthase. Involved in threonine
biosynthesis it catalyses the reaction
O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE +
ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor.
the enzyme is distantly related to the serine/threonine
dehydratases which are also pyridoxal-phosphate
dependent enzymes. the pyridoxal-phosphate binding site
is a Lys (K) residues present at residue 70 of the
model.
Length = 328
Score = 187 bits (478), Expect = 4e-48
Identities = 116/383 (30%), Positives = 176/383 (45%), Gaps = 65/383 (16%)
Query: 58 IFRLFIGQEIKSSK-LRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAM 116
++R + K L D+ FR+ A+ + + N ++LELFH PTLSFKD M
Sbjct: 1 VWRYREFLPVTPEKDLVDLGEGVTPLFRSPALVANVGIK-NLYVLELFHNPTLSFKDRGM 59
Query: 117 QFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQ 176
A + LE T++ A++G+TGAAA A+AGK + + IL+P G+IS +
Sbjct: 60 ---AVALTKALE--LGNDTVLCASTGNTGAAAA-AYAGKAGVKVVILYPAGKIS---LGK 110
Query: 177 MTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFV 236
+ + N V+A+ +FDD Q++VK LF D ++ L+ +NSI R+ Q Y F
Sbjct: 111 LAQALGYNAEVVAIDGNFDDAQRLVKQLFGDKE---ALGLNSVNSI-PYRLEGQKTYAFE 166
Query: 237 SSIALG--SPNRNISFSVPT-GNFGDIFAGYMAKMMG----LPIEKLIIATNENDTLVRM 289
+ LG +P++ + VP GNFG I G+ K G LP+++ I A D +
Sbjct: 167 AVEQLGWEAPDK-VVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAF 225
Query: 290 FDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFY-SLENKKYFRIDS 348
+ G + P T S A+DI P+N+ER L E F S N
Sbjct: 226 LESGQWEPIEDPATLSTAIDIGNPANWERAL------------ELFRRSNGN-------- 265
Query: 349 EHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTL 408
A+ S E++ IK + + Y V+PH+AV + A L +
Sbjct: 266 -----------AEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKG------- 307
Query: 409 ATAHPSKFPDTVKAASGIVPDCP 431
TA P+ V A +G P
Sbjct: 308 -TADPA--ERVVCALTGNGLKDP 327
>gnl|CDD|178182 PLN02569, PLN02569, threonine synthase.
Length = 484
Score = 75.6 bits (186), Expect = 2e-14
Identities = 78/330 (23%), Positives = 139/330 (42%), Gaps = 69/330 (20%)
Query: 107 PTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPE 166
T SFKD+ M + ++ + + + + A++GDT AA + A+ I + P
Sbjct: 161 HTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAA-LSAYCAAAGIPSIVFLPA 219
Query: 167 GRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWAR 226
+IS+ Q Q + A V+++ + FD C ++++ + ++ + + NS+N R
Sbjct: 220 DKISIAQLVQPIANGA---LVLSIDTDFDGCMRLIREVTAE------LPIYLANSLNSLR 270
Query: 227 IMAQ------IVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGY----MAKMMGL--PIE 274
+ Q I+ F + P+ I VP GN G+I+A Y M K +GL +
Sbjct: 271 LEGQKTAAIEILQQFDWEV----PDWVI---VPGGNLGNIYAFYKGFKMCKELGLVDRLP 323
Query: 275 KLII--ATNENDTLVRMFDMG--MYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLL 330
+L+ A N N L R + G ++P T + A+ I P + +R ++ + N +
Sbjct: 324 RLVCAQAANAN-PLYRAYKSGWEEFKPVKANPTFASAIQIGDPVSIDRAVYALKESNG-I 381
Query: 331 VKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVG 390
V+EA + E + + A + M + PHT V
Sbjct: 382 VEEA-----------TEEELMDAQAE---ADKTGM----------------FLCPHTGVA 411
Query: 391 IHAALACRKS----SSTPMVTLATAHPSKF 416
+ A R S + V ++TAH KF
Sbjct: 412 LAALKKLRASGVIGPTDRTVVVSTAHGLKF 441
>gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated.
Length = 351
Score = 57.0 bits (137), Expect = 9e-09
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 28/183 (15%)
Query: 89 TPLIQLN--ANEFLLELFH-----GPTLSFKDIAMQF-IAELMDHILEERDHYITIVGAT 140
TPLI L + E + L+ PT SFKD M +A+ + E ++ A+
Sbjct: 29 TPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAE------AVICAS 82
Query: 141 SGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKI 200
+G+T AAA A+A + + YI+ PEG++++ + Q A ++I++Q +FD+ K
Sbjct: 83 TGNTSAAA-AAYATRAGLKAYIVIPEGKVALGKLAQAVMYGA---DIISIQGNFDEALKS 138
Query: 201 VKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGS-PNRNISFSVPTGNFGD 259
V+ L +V L +NS+N R+ Q F LGS P+ ++P GN G+
Sbjct: 139 VRELAE----TEAVTL--VNSVNPYRLEGQKTAAFEICEQLGSAPD---VLAIPVGNAGN 189
Query: 260 IFA 262
I A
Sbjct: 190 ISA 192
>gnl|CDD|180966 PRK07409, PRK07409, threonine synthase; Validated.
Length = 353
Score = 55.6 bits (135), Expect = 3e-08
Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 58/213 (27%)
Query: 89 TPLIQLNANEFLLEL-----FHG--PTLSFKDIAMQF-IAELMDHILEERDHYITIVGAT 140
TPLI LL + + G PT SFKD M + + + + ++ A+
Sbjct: 32 TPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGAK------AVICAS 85
Query: 141 SGDTGAAAIKAFAGKKRINMYILFPEGRISV--VQQKQMTTSEASNINVIAVQSSFDDCQ 198
+G+T A+A A+A + + ++L PEG+I++ + Q M +E +I + +FDD
Sbjct: 86 TGNTSASA-AAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAE-----IIQIDGNFDDAL 139
Query: 199 KIVKNLFSDVFFCHSVNLSGINSINWARIMAQ------IVYYFVSSIALG-SPNRNISFS 251
+IV+ L + V L +NS+N RI Q IV ALG +P+
Sbjct: 140 EIVRELAEK----YPVTL--VNSVNPYRIEGQKTAAFEIVD------ALGDAPDY---HC 184
Query: 252 VPTGNFGDIFA---GY-----------MAKMMG 270
+P GN G+I A GY + +MMG
Sbjct: 185 IPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMG 217
>gnl|CDD|180494 PRK06260, PRK06260, threonine synthase; Validated.
Length = 397
Score = 54.9 bits (133), Expect = 5e-08
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 42/193 (21%)
Query: 89 TPLIQLNANEFLLEL------FHG--PTLSFKDIAMQF---IA-EL-MDHILEERDHYIT 135
TPL + E L + G PT SFKD M A EL + T
Sbjct: 68 TPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGVK----------T 117
Query: 136 IVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISV--VQQKQMTTSEASNINVIAVQSS 193
+ A++G+T +A++ A+A + + Y+L P G++++ + Q + ++ V+ V +
Sbjct: 118 VACASTGNT-SASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAK-----VLEVDGN 171
Query: 194 FDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQ--IVYYFVSSIALGSPNRNISFS 251
FDD +V L + +NSIN R+ Q I + + P+R +
Sbjct: 172 FDDALDMVVEL------AKEGKIYLLNSINPFRLEGQKTIGFEIADQLGWEVPDRVV--- 222
Query: 252 VPTGNFGDIFAGY 264
+P GN G+I A +
Sbjct: 223 LPVGNAGNISAIW 235
>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed.
Length = 352
Score = 52.0 bits (124), Expect = 3e-07
Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 26/182 (14%)
Query: 89 TPLIQL-NANEFLLELFHG------PTLSFKDIAMQFIAELMDHILEERDHYITIVGATS 141
TPLI L N ++ L +G PT SFKD M +M + + I+ A++
Sbjct: 29 TPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGM-----VMAVAKAKEEGSEAIICAST 83
Query: 142 GDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIV 201
G+T A+A A+A + + I+ PEG+I+ ++ + A +I+++ +FDD K V
Sbjct: 84 GNTSASA-AAYAARLGMKCIIVIPEGKIA---HGKLAQAVAYGAEIISIEGNFDDALKAV 139
Query: 202 KNLFSDVFFCHSVNLSGINSINWARIMAQIVYYF-VSSIALGSPNRNISFSVPTGNFGDI 260
+N+ ++ + L +NS+N RI Q F + +P+ ++P GN G+I
Sbjct: 140 RNIAAE----EPITL--VNSVNPYRIEGQKTAAFEICDQLQRAPD---VLAIPVGNAGNI 190
Query: 261 FA 262
A
Sbjct: 191 TA 192
>gnl|CDD|162219 TIGR01136, cysKM, cysteine synthases. This model discriminates
cysteine synthases (EC 2.5.1.47) (both CysK and CysM)
from cystathionine beta-synthase, a protein found
primarily in eukaryotes and carrying a C-terminal CBS
domain lacking from this protein. Bacterial proteins
lacking the CBS domain but otherwise showing
resemblamnce to cystathionine beta-synthases and
considerable phylogenetic distance from known cysteine
synthases were excluded from the seed and score below
the trusted cutoff.
Length = 299
Score = 30.7 bits (70), Expect = 0.88
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 19/77 (24%)
Query: 89 TPLIQLN------ANEFLLEL-FHGPTLSFKD-IAMQFI--AELMDHILEERDHYITIVG 138
TPL++LN L +L P+ S KD IA+ I AE +L+ D TI+
Sbjct: 8 TPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEK-RGLLKPGD---TIIE 63
Query: 139 ATSGDTG-----AAAIK 150
ATSG+TG AA K
Sbjct: 64 ATSGNTGIALAMVAAAK 80
>gnl|CDD|149495 pfam08455, SNF2_assoc, Bacterial SNF2 helicase associated. This
domain is found in bacterial proteins of the SWF/SNF/SWI
helicase family to the N-terminus of the SNF2 family
N-terminal domain (pfam00176) and together with the
Helicase conserved C-terminal domain (pfam00271). The
function of the domain is not clear.
Length = 376
Score = 30.3 bits (69), Expect = 1.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 327 NSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNS 370
+L K+ +Y L++ + ++ E L+K S R S ED+
Sbjct: 285 RALREKKKYYRLKSGSFLDLEEEELKKFSQLLEDLRLSKEDLGG 328
>gnl|CDD|162221 TIGR01139, cysK, cysteine synthase A. This model distinguishes
cysteine synthase A (CysK) from cysteine synthase B
(CysM). CysM differs in having a broader specificity
that also allows the use of thiosulfate to produce
cysteine thiosulfonate.
Length = 298
Score = 30.0 bits (68), Expect = 1.3
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 19/71 (26%)
Query: 89 TPLIQLN------ANEFL-LELFHGPTLSFKD-IAMQFIAELMDHILEERDHYI----TI 136
TPL++LN AN F+ LE + P+ S KD IA+ I + E+ + TI
Sbjct: 8 TPLVRLNRIEGCNANVFVKLEGRN-PSGSVKDRIALNMIWD------AEKRGLLKPGKTI 60
Query: 137 VGATSGDTGAA 147
V TSG+TG A
Sbjct: 61 VEPTSGNTGIA 71
>gnl|CDD|130174 TIGR01104, V_PPase, vacuolar-type H(+)-translocating
pyrophosphatase. This model describes proton
pyrophosphatases from eukaryotes (predominantly plants),
archaea and bacteria. It is an integral membrane protein
and is suggested to have about 15 membrane spanning
domains. Proton translocating inorganic pyrophosphatase,
like H(+)-ATPase, acidifies the vacuoles and is pivotal
to the vacuolar secondary active transport systems in
plants.
Length = 697
Score = 29.4 bits (66), Expect = 2.2
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 185 INVIAVQSSFDD----CQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240
I+ +A+ + F QK V N +F C +V L WA ++ V + +S A
Sbjct: 315 ISWVALPTGFTIFNFGTQKEVSNW--QLFLCVAVGL-------WAGLLIGFVTEYYTSNA 365
Query: 241 LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIA 279
SP ++++ S TG ++ G + I IA
Sbjct: 366 Y-SPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIA 403
>gnl|CDD|184891 PRK14897, PRK14897, unknown domain/DNA-directed RNA polymerase
subunit A'' fusion protein; Provisional.
Length = 509
Score = 29.0 bits (65), Expect = 2.5
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 322 EISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEK-SN 380
E NS K FR+ +++++ + K S ++ +++ + E+
Sbjct: 117 EYYEENSNEDVLKVIDDVKKLGFRLPPSVIEEIAKAMKKKELSDDEYEEILRRIREEYER 176
Query: 381 YLVDPHTAVGIHAA 394
VDP+ AVGI AA
Sbjct: 177 ARVDPYEAVGIVAA 190
>gnl|CDD|181054 PRK07591, PRK07591, threonine synthase; Validated.
Length = 421
Score = 28.0 bits (63), Expect = 5.4
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 22/96 (22%)
Query: 107 PTLSFKD----IAMQFIAELMDHILEERDHYITIVGATSGDTG--AAAIKAFAGKKRINM 160
PT SFKD +A+ EL T V S TG A ++ A A + ++
Sbjct: 116 PTHSFKDRVVSVALTAARELG----------FTTVACAS--TGNLANSVAAHAARAGLDS 163
Query: 161 YILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDD 196
+ P + K + T ++AV ++DD
Sbjct: 164 CVFIPAD---LEAGKIVGTL-VYGPTLVAVDGNYDD 195
>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate
dehydrogenase/3-phosphoshikimate
1-carboxyvinyltransferase; Provisional.
Length = 673
Score = 27.7 bits (61), Expect = 6.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 5 STRNVDLSLGFCDT----ILSGLATDGGLYIPKYIPRLSEKEIKDL 46
+ + DL LG T + + LA +GG Y +PR+ E+ I DL
Sbjct: 320 TAKTADLFLGNAGTAVRPLTAALAVNGGEYRIHGVPRMHERPIGDL 365
>gnl|CDD|178682 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like;
Provisional.
Length = 1195
Score = 27.9 bits (62), Expect = 6.4
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 398 RKSSSTPMVTL-ATAHPSKFPDTVKAASGIVPDCPISLEQMMRRP----ENCKVMNKNID 452
+K + P++ L ATA S D V+A G+V +C + Q RP K ++
Sbjct: 612 QKFPNIPVLALTATATASVKEDVVQAL-GLV-NC-VVFRQSFNRPNLWYSVVPKTKKCLE 668
Query: 453 EIKKFIKK 460
+I KFIK+
Sbjct: 669 DIDKFIKE 676
>gnl|CDD|183302 PRK11761, cysM, cysteine synthase B; Provisional.
Length = 296
Score = 27.9 bits (63), Expect = 6.5
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 25/93 (26%)
Query: 89 TPLIQL------NANEFLLEL-FHGPTLSFKD---IAMQFIAELMDHILEERDHYITIVG 138
TPL++L N L +L + P S KD ++M AE I T++
Sbjct: 13 TPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG----DTLIE 68
Query: 139 ATSGDTG-----AAAIKAFAGKKRINMYILFPE 166
ATSG+TG AAIK + M ++ PE
Sbjct: 69 ATSGNTGIALAMIAAIKGY------RMKLIMPE 95
>gnl|CDD|161721 TIGR00123, cbiM, cobalamin biosynthesis protein CbiM. In
Methanobacterium thermoautotrophicum, Archaeoglobus
fulgidus, and Methanococcus jannaschii, a second homolog
of cbiM is also found. These cbiM-related proteins
appear to represent a distinct but less well-conserved
orthologous group. Still more distant homologs include
sll0383 from Synechocystis sp. and HI1621 from
Haemophilus influenzae; the latter protein, from a
species that does not synthesize cobalamin, is the most
divergent member of the group. The functions of and
relationships among the set of proteins homologous to
cbiM have not been determined.
Length = 214
Score = 27.5 bits (61), Expect = 7.7
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 211 CHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYM 265
L ++ A ++ + Y V+S+ L ++F +P F +M
Sbjct: 130 ACRAGLRRDVAVFLAAMLGDLATYVVTSVQLA-----LAFPIPHAGFTGSVVKFM 179
>gnl|CDD|163243 TIGR03383, urate_oxi, urate oxidase. Members of this protein
family are urate oxidase, also called uricase. This
protein contains two copies of the domain described by
the uricase model pfam01014. In animals, this enzyme has
been lost from primates and birds.
Length = 282
Score = 27.2 bits (61), Expect = 9.5
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 13/53 (24%)
Query: 302 ETTSPAMDIQIPSNFERLLFEISGRNSL----LVKEAFYSLENKKYFRIDSEH 350
ET SP+ +Q L+ + G+ L V+E S+ NK YF +D
Sbjct: 213 ETYSPS--VQ------NTLYLM-GKAVLERFPEVEEVSLSMPNKHYFLVDLSP 256
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.135 0.385
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,529,147
Number of extensions: 492264
Number of successful extensions: 1138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1123
Number of HSP's successfully gapped: 30
Length of query: 469
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 372
Effective length of database: 3,898,497
Effective search space: 1450240884
Effective search space used: 1450240884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)