BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus
Liberibacter asiaticus str. psy62]
         (469 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 469

 Score =  971 bits (2509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/469 (100%), Positives = 469/469 (100%)

Query: 1   MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR 60
           MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR
Sbjct: 1   MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR 60

Query: 61  LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120
           LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA
Sbjct: 61  LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120

Query: 121 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS 180
           ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS
Sbjct: 121 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS 180

Query: 181 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240
           EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA
Sbjct: 181 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240

Query: 241 LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIV 300
           LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIV
Sbjct: 241 LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIV 300

Query: 301 METTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSA 360
           METTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSA
Sbjct: 301 METTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSA 360

Query: 361 KRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDTV 420
           KRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDTV
Sbjct: 361 KRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDTV 420

Query: 421 KAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKRNMESKIEP 469
           KAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKRNMESKIEP
Sbjct: 421 KAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKRNMESKIEP 469


>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 27.3 bits (59), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 90/197 (45%), Gaps = 25/197 (12%)

Query: 199 KIVKNLFSDVFFCHSVNLSG-INSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNF 257
           +++KN+F   F    + ++G I  +    IM    Y F +S  +  P     +S+PTG  
Sbjct: 111 EMLKNVF---FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS 167

Query: 258 GDIFAGYMAKMMG-LP-----IEKLIIATNENDTLVRMFDMGMYRPEIV--METTSPAMD 309
            D+F   + + +  LP     IEK ++      ++   F++ ++ P      E TSPA  
Sbjct: 168 VDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI-IHNPRKAKDFEWTSPAR- 225

Query: 310 IQIPSNFERLLFE--ISGRNSLLVKEAFYSLENKKYFRIDSEHLQKM--SLSFSAKRASM 365
                  ERL ++  ++G+ +LL+    +  E      ++ +  QK+  ++ FS  ++  
Sbjct: 226 -------ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278

Query: 366 EDVNSVIKSVLEKSNYL 382
             +  +++ + +K+  L
Sbjct: 279 SAIKDILQDMSQKNRML 295


>gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 396

 Score = 26.2 bits (56), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 247 NISFSVPTGNFGDIFAGYMAKMM 269
            + F +P G  GD +  Y+ +MM
Sbjct: 242 ELDFDIPIGKHGDCYDRYLVRMM 264


>gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 421

 Score = 25.4 bits (54), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 17/140 (12%)

Query: 168 RISVVQQKQMTTS----EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGIN--- 220
            +S+ +Q Q T +      + +N + V  SFD     + N  S      + N SGI+   
Sbjct: 221 EVSIFRQDQSTNNSFPYNVAPLNTVEV--SFDPVTGYLANS-SHKAISFNDNTSGIDQQI 277

Query: 221 SINWARIMAQIVYYFV---SSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLI 277
           +I+ ++   Q+   F+   S I   +P +   FSV    + DI      +   +PI +L 
Sbjct: 278 TIDISK-TTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDGTR---VPIYRLA 333

Query: 278 IATNENDTLVRMFDMGMYRP 297
           IAT  ++  +++FD   Y P
Sbjct: 334 IATVPSEDNLKLFDGNTYLP 353


>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 737

 Score = 25.4 bits (54), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 201 VKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPT 254
           V  +  D+F   +  ++ +NS+ +  I      + +S +  G    + SF VPT
Sbjct: 109 VGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPT 162


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 23.9 bits (50), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 149 IKAFAGKKRINMYILFPEGRISVVQ 173
           ++A + K+R+ M ++F E  ISV+Q
Sbjct: 201 LEAVSVKERLEMLLVFMESEISVLQ 225


>gi|255764508|ref|YP_003065363.2| hypothetical protein CLIBASIA_04245 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 242

 Score = 23.1 bits (48), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 288 RMFDMGMYRPEIVMETTSPAMDIQIPSNFER-LLFEISGRNSLLVKEAFYSLENKKYFR 345
           ++ + G+ R +I +ET S  +D    + F   ++  + G+N +LV  A++   ++ YF+
Sbjct: 137 KLLESGVERDDIKLETQS--LDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQ 193


>gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 781

 Score = 23.1 bits (48), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 143 DTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQK 199
           D G AA+K       ++  +LF + +   V   Q+   E   +  I++QS+  + QK
Sbjct: 250 DRGYAAVK-------VSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQK 299


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.135    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 285,381
Number of Sequences: 1233
Number of extensions: 11590
Number of successful extensions: 31
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 11
length of query: 469
length of database: 328,796
effective HSP length: 77
effective length of query: 392
effective length of database: 233,855
effective search space: 91671160
effective search space used: 91671160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 40 (20.0 bits)