HHsearch alignment for GI: 254780466 and conserved domain: PRK13168
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=97.40 E-value=0.00058 Score=44.24 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 189999999852-89988899868885179999998098169997289999999999963
Q gi|254780466|r 209 PEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 209 P~~LleriI~~~-S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
T Consensus 279 ae~L~~~a~~~l~~~~~~~VlDLYcGvGtfsl~LA~~~~~V~gvE~~~~av~~A~~Na~~ 338 (440)
T PRK13168 279 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVPAMVERARENARR 338 (440)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 999999999985267898899862385621111353067688760579999999999997