HHsearch alignment for GI: 254780466 and conserved domain: TIGR00406
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=96.46 E-value=0.0094 Score=36.88 Aligned_cols=117 Identities=21% Similarity=0.209 Sum_probs=75.8
Q ss_pred CCCCCCCHHHHHHHHHHCCCCC--CEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCC
Q ss_conf 3687781899999998528998--889986888517999999809-8169997289999999999963056876563024
Q gi|254780466|r 203 LHPTQKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279 (375)
Q Consensus 203 ~HPTqKP~~LleriI~~~S~~g--DiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~ 279 (375)
T Consensus 177 tH~TT---~LCLe~L~~~d~k~kh~~viD~GCGSGIL~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~ 253 (330)
T TIGR00406 177 THPTT---SLCLELLEDLDLKDKHKKVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLE 253 (330)
T ss_pred CCHHH---HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHC
T ss_conf 74578---999998740147776654787126717899999975123112213772899999976874588645764320
Q ss_pred ---CCCCCCCCCCHHHHHHCCCC-CCCCEEECCCCCEEEEECCCCCEEECC
Q ss_conf ---44333775523469882865-877657668980699981598178698
Q gi|254780466|r 280 ---TGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGT 326 (375)
Q Consensus 280 ---~~~~~~~rvpfg~lie~g~l-~~g~~L~~~~~~~~a~v~~DG~l~~~~ 326 (375)
T Consensus 254 ~~vPe~~~~~e~~~DViV-ANiLA~vi~~L~p~---~~~L~~~~G~lilSG 300 (330)
T TIGR00406 254 NSVPELEQPIEGKADVIV-ANILAEVIKELYPQ---FSRLVKPGGHLILSG 300 (330)
T ss_pred CCCCCCCCCCCCCCCEEE-ECCHHHHHHHHHHH---HHHHCCCCCCEEEHH
T ss_conf 578753453225667578-80024578764135---513106899657413