HHsearch alignment for GI: 254780466 and conserved domain: pfam02384
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=96.95 E-value=0.0016 Score=41.50 Aligned_cols=61 Identities=30% Similarity=0.400 Sum_probs=43.2
Q ss_pred CCCCCC-HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH---------CCEEEEEEECHHHHHHHHHHHH
Q ss_conf 687781-89999999852899888998688851799999980---------9816999728999999999996
Q gi|254780466|r 204 HPTQKP-EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL---------RRSFIGIEMKQDYIDIATKRIA 266 (375)
Q Consensus 204 HPTqKP-~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~l---------gR~~IGiE~~~~Y~~~a~~Rl~ 266 (375)
T Consensus 28 ffTPr~Vv~lmv~ll--~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~ 98 (312)
T pfam02384 28 FYTPREVSKLIVELL--EPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMI 98 (312)
T ss_pred ECCCHHHHHHHHHHH--CCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHH
T ss_conf 588789999999982--89999988216877337899999999984378556556368899899999999999