HHsearch results for GI: 254780466 and protein with PDBid: 2okc_A
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, structural genomics; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=94.42 E-value=0.048 Score=31.28 Aligned_cols=70 Identities=24% Similarity=0.332 Sum_probs=40.1
Q ss_pred CCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 70851725998972841471189847787615587133367851300134435778989999988999999998639687
Q gi|254780466|r 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100 (375)
Q Consensus 21 nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~G 100 (375)
..+.++|.+ ..-+.+++|+|++.|||+............. .+ ..+...+. .|+..+.+.|+++|
T Consensus 238 ~~i~~~d~~---~~~~~~~fD~Ii~NPPf~~~~~~~~~~~~~~-------~~--~~~~~~~~----~Fi~~~l~~Lk~~G 301 (445)
T 2okc_A 238 SPIVCEDSL---EKEPSTLVDVILANPPFGTRPAGSVDINRPD-------FY--VETKNNQL----NFLQHMMLMLKTGG 301 (445)
T ss_dssp CSEEECCTT---TSCCSSCEEEEEECCCSSCCCTTCCCCCCTT-------SS--SCCSCHHH----HHHHHHHHHEEEEE
T ss_pred CEEECCCHH---HHCCCCCCCEEECCCCCCCCCCCCCCCCHHH-------HC--CCCCCHHH----HHHHHHHHHHCCCC
T ss_conf 012215303---2024346872245899788865533102244-------30--12330779----99999999821798
Q ss_pred EEEEEC
Q ss_conf 299983
Q gi|254780466|r 101 TLWVIG 106 (375)
Q Consensus 101 si~v~~ 106 (375)
.+.++.
T Consensus 302 ~~aiIv 307 (445)
T 2okc_A 302 RAAVVL 307 (445)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 599993