HHsearch results for GI: 254780466 and protein with PDBid: 2pjd_A

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.17  E-value=0.00028  Score=44.86  Aligned_cols=49  Identities=10%  Similarity=0.107  Sum_probs=41.9

Q ss_pred             CCCCCEEEECCCCCHHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf             8998889986888517999999809--816999728999999999996305
Q gi|254780466|r  221 TKPGDIILDPFFGSGTSGAVAKKLR--RSFIGIEMKQDYIDIATKRIASVQ  269 (375)
Q Consensus       221 S~~gDiVLDPF~GSGTT~~aA~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~~  269 (375)
                      ..+++-|||..||+|..+.++.+.+  .+.+++|+++..++.|++.++.-.
T Consensus       194 ~~~~~~VLDlGcG~G~l~~~la~~~p~~~v~~vD~s~~al~~ar~n~~~n~  244 (343)
T 2pjd_A          194 PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG  244 (343)
T ss_dssp             TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf             058982999325277999999997899789999899999999999999849