HHsearch results for GI: 254780466 and protein with PDBid: 3khk_A

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.75  E-value=6.3e-05  Score=48.78  Aligned_cols=61  Identities=20%  Similarity=0.196  Sum_probs=47.1

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH-----------------CCEEEEEEECHHHHHHHHHHHH
Q ss_conf             68778189999999852899888998688851799999980-----------------9816999728999999999996
Q gi|254780466|r  204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL-----------------RRSFIGIEMKQDYIDIATKRIA  266 (375)
Q Consensus       204 HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~l-----------------gR~~IGiE~~~~Y~~~a~~Rl~  266 (375)
                      |-|+  ..+.+-++.......+.|+||.||||+.+++|.+.                 .-...|+|+++..+.+|+-++.
T Consensus       227 ffTP--~~Iv~lmv~ll~p~~~~I~DPacGsGgfLi~a~~~i~~~~~~~~~~~~~~~~~~~l~G~Ei~~~~~~la~~nm~  304 (544)
T 3khk_A          227 YYTP--KSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMV  304 (544)
T ss_dssp             TCCC--HHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHH
T ss_pred             ECCC--HHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCEEECCCCCHHHHHHHHHHHH
T ss_conf             5481--89999998623899883703777761789999999998245222220222201106150387799999998898