HHsearch results for GI: 254780466 and protein with PDBid: 3khk_A
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.75 E-value=6.3e-05 Score=48.78 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=47.1
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH-----------------CCEEEEEEECHHHHHHHHHHHH
Q ss_conf 68778189999999852899888998688851799999980-----------------9816999728999999999996
Q gi|254780466|r 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL-----------------RRSFIGIEMKQDYIDIATKRIA 266 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~l-----------------gR~~IGiE~~~~Y~~~a~~Rl~ 266 (375)
|-|+ ..+.+-++.......+.|+||.||||+.+++|.+. .-...|+|+++..+.+|+-++.
T Consensus 227 ffTP--~~Iv~lmv~ll~p~~~~I~DPacGsGgfLi~a~~~i~~~~~~~~~~~~~~~~~~~l~G~Ei~~~~~~la~~nm~ 304 (544)
T 3khk_A 227 YYTP--KSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMV 304 (544)
T ss_dssp TCCC--HHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHH
T ss_pred ECCC--HHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCEEECCCCCHHHHHHHHHHHH
T ss_conf 5481--89999998623899883703777761789999999998245222220222201106150387799999998898