HHsearch results for GI: 254780466 and protein with PDBid: 3khk_A
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=91.42 E-value=0.098 Score=29.36 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=37.1
Q ss_pred CCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEE--EECC-CCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 708517259989728414711898477876155871333678513--0013-4435778989999988999999998639
Q gi|254780466|r 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVT-DSWDKFSSFEAYDAFTRAWLLACRRVLK 97 (375)
Q Consensus 21 nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~--~~~~-d~wd~~~s~~~Y~~f~~~wl~e~~RvLK 97 (375)
..+.++|++.. ...+..++|+|++.|||+.............+. .... ...........+. .|+..+.+.||
T Consensus 312 ~~~~~~d~l~~-~~~~~~~fD~Il~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~Fi~~~l~~Lk 386 (544)
T 3khk_A 312 FGKKNADSFLD-DQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANF----AWMLHMLYHLA 386 (544)
T ss_dssp CCSSSCCTTTS-CSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHH----HHHHHHHHTEE
T ss_pred CCCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHH----HHHHHHHHHCC
T ss_conf 45356754346-55655446757506987766555300013545540345643457899874789----99999997177
Q ss_pred CCCEEEEEC
Q ss_conf 687299983
Q gi|254780466|r 98 PNGTLWVIG 106 (375)
Q Consensus 98 ~~Gsi~v~~ 106 (375)
++|.+.++.
T Consensus 387 ~~G~~aiIv 395 (544)
T 3khk_A 387 PTGSMALLL 395 (544)
T ss_dssp EEEEEEEEE
T ss_pred CCCEEEEEE
T ss_conf 778069997