BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780466|ref|YP_003064879.1| putative modification
methylase [Candidatus Liberibacter asiaticus str. psy62]
         (375 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|197104043|ref|YP_002129420.1| modification methylase [Phenylobacterium zucineum HLK1]
 gi|196477463|gb|ACG76991.1| modification methylase [Phenylobacterium zucineum HLK1]
          Length = 359

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 268/352 (76%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D II+G+ +  L+KLP +SVDL+FADPPYNLQL G L RPD+S VDAV D WD+F SFEA
Sbjct: 6   DTIIEGDCLEALKKLPDRSVDLVFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFEA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL  CRRVLK +G +WVIGSYHNIFR+G  +Q+L FWILNDIVWRKSNPMPNF
Sbjct: 66  YDAFTRAWLKECRRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS S   + YTFNYDA+K AN+++QMRSDW +P+C+G ERL++  G
Sbjct: 126 KGTRFTNAHETLIWASKSRGGRRYTFNYDAMKMANDELQMRSDWTLPLCTGDERLKDGSG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL R++++STKPGD+ILDPFFG+GT+GAVA++L R F+GIE + +Y  +
Sbjct: 186 AKAHPTQKPEALLHRVILASTKPGDVILDPFFGTGTTGAVARRLGRKFVGIEREAEYAAL 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIA V P    E+ V   KR EPRV F  ++E GL++PG +L   +G  +A V ADG
Sbjct: 246 ARKRIAQVTPATADEMAVTGSKRAEPRVPFGTILEAGLLRPGDVLYCPKGRNAARVRADG 305

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           +L+ G   GSIH+VGA V  +  CNGW +W+F+    L  I+ LR  VR +L
Sbjct: 306 SLVVGEVSGSIHKVGALVQSAPACNGWTYWHFKSDKGLAPIDVLRAKVRSQL 357


>gi|227821131|ref|YP_002825101.1| modification methylase SmeIP [Sinorhizobium fredii NGR234]
 gi|227340130|gb|ACP24348.1| modification methylase SmeIP [Sinorhizobium fredii NGR234]
          Length = 376

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 257/372 (69%), Positives = 307/372 (82%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS   SLA          W D IIKG+ ++ L  LP  SVD++FADPPYNLQL G L+RP
Sbjct: 1   MSSVVSLAEISRAARPLSWLDSIIKGDCVAALNALPDNSVDVVFADPPYNLQLGGMLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 61  DQSLVDAVDDEWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L+FWILNDI+WRK+NPMPNF+GRRFQNAHETLIWA+P+ KAKGYTFNY+A+KAAN+DVQM
Sbjct: 121 LHFWILNDIIWRKTNPMPNFKGRRFQNAHETLIWATPNAKAKGYTFNYEAMKAANDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSG ERL+  DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGGERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +QDYID A +RIA+V+PLG   L+V+TGK+ EPRVAFN L+E GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLIESGLIK 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG +LT+A+   SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE  G L  
Sbjct: 301 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEAGGTLKP 360

Query: 361 INTLRILVRKEL 372
           I+ LR ++R +L
Sbjct: 361 IDELRSVIRNDL 372


>gi|254465616|ref|ZP_05079027.1| modification methylase SmeIP [Rhodobacterales bacterium Y4I]
 gi|206686524|gb|EDZ47006.1| modification methylase SmeIP [Rhodobacterales bacterium Y4I]
          Length = 367

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 212/355 (59%), Positives = 267/355 (75%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II G+ I  +  LPA SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF 
Sbjct: 14  LNTIIGGDCIEAMNSLPANSVDLIFADPPYNLQLKGQLHRPDNSKVDAVDDHWDQFSSFA 73

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTR WL A RRVLKPNG++WVIGSYHNIFR+G +LQ+  +W+LND++WRKSNPMPN
Sbjct: 74  AYDQFTREWLKAARRVLKPNGSIWVIGSYHNIFRVGALLQDEGYWVLNDVIWRKSNPMPN 133

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHET+IWAS S  A  YTFNY+ALKA NE +QMRSDW++PIC+G ER+++++
Sbjct: 134 FRGKRFTNAHETMIWASKSEGA-KYTFNYEALKALNEGIQMRSDWVLPICTGHERIKDEN 192

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL RILV +T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 193 GDKAHPTQKPESLLHRILVGATNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRK 252

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRI +V+      L V   KR  PRV F  LVERG+++PG+ L +      A V AD
Sbjct: 253 VAEKRIKAVRKFDREALEVSASKRAAPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRAD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTLI     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R E+ N
Sbjct: 313 GTLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAEMQN 367


>gi|15964679|ref|NP_385032.1| adenine DNA methyltransferase protein [Sinorhizobium meliloti 1021]
 gi|307304257|ref|ZP_07584009.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti
           BL225C]
 gi|307320562|ref|ZP_07599977.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
 gi|7387561|sp|O30569|MTS1_RHIME RecName: Full=Modification methylase SmeI; Short=M.SmeI; AltName:
           Full=Adenine-specific methyltransferase SmeIP; AltName:
           Full=M.CcrMI ortholog; AltName: Full=Modification
           methylase SmeIP; Short=M.SmeIP
 gi|15073857|emb|CAC45498.1| Adenine DNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306893838|gb|EFN24609.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
 gi|306902725|gb|EFN33318.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 376

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 257/372 (69%), Positives = 308/372 (82%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS   SLA          W D IIKG+ ++ L  LP  SVD++FADPPYNLQL G L+RP
Sbjct: 1   MSSVVSLAEISRAARPLNWLDSIIKGDCVAALNALPDHSVDVVFADPPYNLQLGGTLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 61  DQSLVDAVDDDWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L+FW+LNDI+WRK+NPMPNF+GRRFQNAHETLIWA+P+ KAKGYTFNY+A+KAAN+DVQM
Sbjct: 121 LHFWVLNDIIWRKTNPMPNFKGRRFQNAHETLIWATPNAKAKGYTFNYEAMKAANDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSGSERL+  DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGSERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +QDYID A +RIA+V+PLG   L+V+TGK+ EPRVAFN LVE GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLVESGLIK 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG +LT+A+   SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE+   L  
Sbjct: 301 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEEGSVLKP 360

Query: 361 INTLRILVRKEL 372
           I+ LR ++R +L
Sbjct: 361 IDELRSVIRNDL 372


>gi|150395765|ref|YP_001326232.1| DNA methylase N-4/N-6 domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150027280|gb|ABR59397.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium medicae WSM419]
          Length = 398

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 256/372 (68%), Positives = 307/372 (82%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS   SLA          W D IIKG+ ++ L  LP  SVD++FADPPYNLQL G L+RP
Sbjct: 23  MSSVVSLAEISRAARPLNWLDSIIKGDCVAALNALPDNSVDVVFADPPYNLQLGGTLHRP 82

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 83  DQSLVDAVDDDWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 142

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L+FW+LNDI+WRK+NPMPNF+GRRFQNAHETLIWA+P+ KAKGYTFNY+A+KAAN+DVQM
Sbjct: 143 LHFWVLNDIIWRKTNPMPNFKGRRFQNAHETLIWATPNAKAKGYTFNYEAMKAANDDVQM 202

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSGSERL+  DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 203 RSDWLFPICSGSERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 262

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +QDYID A +RIA+V+PLG   L+V+TGK+ EPRVAFN L+E GLI+
Sbjct: 263 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLIESGLIK 322

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG +LT+A+   SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE    L  
Sbjct: 323 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGSVLKP 382

Query: 361 INTLRILVRKEL 372
           I+ LR ++R +L
Sbjct: 383 IDELRSVIRNDL 394


>gi|89070018|ref|ZP_01157349.1| modification methylase [Oceanicola granulosus HTCC2516]
 gi|89044355|gb|EAR50493.1| modification methylase [Oceanicola granulosus HTCC2516]
          Length = 368

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 205/353 (58%), Positives = 265/353 (75%), Gaps = 1/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I  +  LP  S+DLIFADPPYNLQL G L+RPD+S VDAV D+WD+F++FE
Sbjct: 14  LNTILSGDCIEAMRTLPDASIDLIFADPPYNLQLKGDLHRPDNSRVDAVDDAWDRFATFE 73

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YDAFTRAWL   RR+LKP G +WVIGSYHN+FR+G  LQN  +WILND+VWRKSNPMPN
Sbjct: 74  TYDAFTRAWLAEARRLLKPTGAIWVIGSYHNVFRLGAELQNQGYWILNDVVWRKSNPMPN 133

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R  NAHETLIWAS S  +  YTFNY+ALKA NE  QMRSDW++PIC+G ERL++ +
Sbjct: 134 FRGKRLTNAHETLIWASKSEGS-KYTFNYEALKALNEGTQMRSDWVLPICTGHERLKDAN 192

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y +
Sbjct: 193 GDKAHPTQKPESLLHRVLLGTTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYRE 252

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A  R+  ++      L V T KR EPRV F  LVERG+++PG++LT+  G  SA V AD
Sbjct: 253 VAEARLKRIRKYDRDALAVTTSKRAEPRVPFGQLVERGMLRPGEVLTSLNGQKSAKVRAD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GTL++    GSIH+VGA + G+ +CNGW +W F + G+   I+ LR  +R E+
Sbjct: 313 GTLVADDVKGSIHQVGAHLEGAPSCNGWTYWCFRRDGKTVPIDLLRQQIRAEM 365


>gi|254476528|ref|ZP_05089914.1| modification methylase SmeIP [Ruegeria sp. R11]
 gi|214030771|gb|EEB71606.1| modification methylase SmeIP [Ruegeria sp. R11]
          Length = 374

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 213/355 (60%), Positives = 264/355 (74%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I V+  LP+ SVD+IFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF 
Sbjct: 21  LNAILDGDCIEVMAGLPSNSVDMIFADPPYNLQLKGQLHRPDNSKVDAVDDHWDQFSSFG 80

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTR WL   RR+LKPNG++WVIGSYHNIFR+GT +Q+  FWILND++WRKSNPMPN
Sbjct: 81  VYDKFTRDWLKEARRILKPNGSIWVIGSYHNIFRVGTAMQDEGFWILNDVIWRKSNPMPN 140

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHET+IWAS S  A  YTFNY+ALKA NE +QMRSDW++PIC+G ERL++  
Sbjct: 141 FRGKRFTNAHETMIWASKSEGA-KYTFNYEALKALNEGLQMRSDWVLPICTGHERLKDDA 199

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPE+LL RIL+ ST PGD++LDPFFG+GT+GAVAK L R FIGIE +  Y +
Sbjct: 200 GNKAHPTQKPESLLHRILLGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREATYRE 259

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRI SV+      L V   KR EPRV F  LVERG+++PG+ L +      A V AD
Sbjct: 260 VAEKRIKSVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRAD 319

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTLI     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R EL N
Sbjct: 320 GTLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAELQN 374


>gi|260432296|ref|ZP_05786267.1| modification methylase CcrMI [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416124|gb|EEX09383.1| modification methylase CcrMI [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 367

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 213/355 (60%), Positives = 267/355 (75%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I V+  LP  SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF 
Sbjct: 14  LNTILSGDCIEVMNSLPEASVDLIFADPPYNLQLKGQLHRPDNSQVDAVDDHWDQFSSFA 73

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A  R+LKPNG +WVIGSYHNIFR+G+ LQ+  +WILND++WRKSNPMPN
Sbjct: 74  AYDKFTRAWLKAAHRLLKPNGAIWVIGSYHNIFRVGSALQDAGYWILNDVIWRKSNPMPN 133

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHET+IWAS    A  YTFNY+ALKA NE VQMRSDW++PIC+G ERL++++
Sbjct: 134 FRGKRFTNAHETMIWASKREGA-KYTFNYEALKALNEGVQMRSDWVLPICTGHERLKDEN 192

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL R+L+ ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 193 GDKAHPTQKPESLLHRVLIGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREESYRK 252

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRIA V+      L V   KR EPRV F  LVERG+++PG+ L +      A V AD
Sbjct: 253 VAEKRIAKVRKFDRDALEVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRAD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTL+     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R EL+N
Sbjct: 313 GTLVGDNIKGSIHQVGAHLENAPSCNGWTYWCFKREGKTVPIDVLRQQIRAELHN 367


>gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040143|gb|ACT56939.1| putative modification methylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 375

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 375/375 (100%), Positives = 375/375 (100%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP
Sbjct: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN
Sbjct: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM
Sbjct: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV
Sbjct: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ
Sbjct: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS
Sbjct: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360

Query: 361 INTLRILVRKELYNC 375
           INTLRILVRKELYNC
Sbjct: 361 INTLRILVRKELYNC 375


>gi|310817213|ref|YP_003965177.1| modification methylase [Ketogulonicigenium vulgare Y25]
 gi|308755948|gb|ADO43877.1| modification methylase [Ketogulonicigenium vulgare Y25]
          Length = 367

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 216/353 (61%), Positives = 272/353 (77%), Gaps = 1/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D II G+ I  +  LP  S+DLIFADPPYNLQL G+L+RPD+S VDAV D WD+F SF 
Sbjct: 14  LDSIIAGDCIDAMRALPDASIDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFDSFA 73

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYDAF+RAWL   RR+LKPNG +WVIGSYHNIFR+G  LQN  +W+LND++WRKSNPMPN
Sbjct: 74  AYDAFSRAWLAEARRLLKPNGAIWVIGSYHNIFRLGAELQNQGYWLLNDVIWRKSNPMPN 133

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R  NAHETLIWA+ S  AK  TFNY+ALKA NE VQMRSDW++PIC+G ERL+  D
Sbjct: 134 FRGKRLTNAHETLIWAAKSENAKP-TFNYEALKALNEGVQMRSDWVLPICTGHERLKGDD 192

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 193 GAKAHPTQKPESLLHRVLIGTTNPGDVVLDPFFGTGTTGAVAKMLGRHFIGIEREESYRK 252

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +AT+R+A V+PL    L V T KR EPRVAF LLVERG+++PG+ L +  G  SA V AD
Sbjct: 253 VATRRLAKVRPLSAEALAVTTSKRAEPRVAFGLLVERGMLRPGEELQSLNGRHSAKVRAD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GTL++    GSIH+VGA++ G+ +CNGW +W+F++ G+   I+ LR  +R E+
Sbjct: 313 GTLVATDHTGSIHQVGARLEGAPSCNGWTYWHFKRDGQNVPIDALRQQIRDEM 365


>gi|222147821|ref|YP_002548778.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium vitis S4]
 gi|221734809|gb|ACM35772.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium vitis S4]
          Length = 377

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 254/372 (68%), Positives = 311/372 (83%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M+    LA     N  F W + IIKG+ ++ LE LP +SVD IFADPPYNLQL G L+RP
Sbjct: 1   MASVFPLADLRRSNDPFAWMNSIIKGDCVAALEALPDQSVDAIFADPPYNLQLGGMLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D S+VDAV D+WD+F+SFEAYDAFTRAWLLACRRVLKP+GT+WVIGSYHNIFR+G  LQ+
Sbjct: 61  DQSVVDAVDDAWDQFASFEAYDAFTRAWLLACRRVLKPHGTIWVIGSYHNIFRVGATLQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           LNFWILNDIVWRK+NPMPNF+GRRFQNAHET+IWAS   KAK YTFNYDALKA+N+DVQM
Sbjct: 121 LNFWILNDIVWRKTNPMPNFKGRRFQNAHETMIWASRDAKAKSYTFNYDALKASNDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSG ERL+ +DG+K+HPTQKPEALL+R++++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGGERLKGEDGKKIHPTQKPEALLARVILASTKPGDVVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R+F+GIE +QDYID A+ RI +V+ LG +ELTVLTGK++EPRVAFN L++ GL+Q
Sbjct: 241 AKRLGRNFVGIEREQDYIDAASARIDAVEALGKVELTVLTGKKSEPRVAFNTLLDSGLLQ 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PGQ+L+  +   SA + ADGTL+SGT+ GSIHRVGAKV G + CNGW FW++E  G+L  
Sbjct: 301 PGQVLSCEKRRHSAIIRADGTLVSGTQAGSIHRVGAKVRGLDACNGWTFWHYEDAGKLKP 360

Query: 361 INTLRILVRKEL 372
           I+ LR LVR  +
Sbjct: 361 IDDLRSLVRASM 372


>gi|254512453|ref|ZP_05124520.1| modification methylase SmeIP [Rhodobacteraceae bacterium KLH11]
 gi|221536164|gb|EEE39152.1| modification methylase SmeIP [Rhodobacteraceae bacterium KLH11]
          Length = 367

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 213/355 (60%), Positives = 266/355 (74%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I  +  LP  SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF 
Sbjct: 14  LNTILSGDCIEAMNSLPEASVDLIFADPPYNLQLKGQLHRPDNSQVDAVDDHWDQFSSFG 73

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A  R+LKPNG +WVIGSYHNIFR+G+ LQ+  +WILND+VWRKSNPMPN
Sbjct: 74  AYDQFTRAWLKAAHRLLKPNGAIWVIGSYHNIFRVGSALQDAGYWILNDVVWRKSNPMPN 133

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHET+IWAS    A  YTFNY+ALKA NE VQMRSDW++PIC+G ERL++++
Sbjct: 134 FRGKRFTNAHETMIWASKREGA-KYTFNYEALKALNEGVQMRSDWVLPICTGHERLKDEN 192

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL R+L+ ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 193 GDKAHPTQKPESLLHRVLIGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREESYRK 252

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRIA V+      L V   KR EPRV F  LVERG+++PG+ L +      A V AD
Sbjct: 253 VAEKRIAKVRKFDREALEVSASKRAEPRVPFGQLVERGMLRPGEELYSMNKRHKAKVRAD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTL+     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R EL+N
Sbjct: 313 GTLVGDNVKGSIHQVGAHLENAPSCNGWTYWCFKREGKTVPIDVLRQQIRAELHN 367


>gi|146276124|ref|YP_001166283.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554365|gb|ABP68978.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 372

 Score =  451 bits (1160), Expect = e-125,   Method: Composition-based stats.
 Identities = 207/354 (58%), Positives = 265/354 (74%), Gaps = 1/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF 
Sbjct: 15  LNQILAGDCIEVMRSLPECSVDLIFADPPYNLQLRGDLHRPDNSRVDAVDDHWDQFSSFA 74

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           +YD FTR WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPN
Sbjct: 75  SYDQFTREWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPN 134

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G+R  NAHETLIWAS    +  YTFNY+ALKA NE +QMRSDW+IPIC+G ERL+++ 
Sbjct: 135 FKGKRLTNAHETLIWASKQEAS-KYTFNYEALKALNEGIQMRSDWVIPICTGHERLKDEH 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPEALL R++V++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 194 GDKAHPTQKPEALLHRVMVATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEGYRK 253

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A +R++ V+      L V   KR EPRV F  LVERG+++PG+ L +      A V AD
Sbjct: 254 VAAERLSRVRRFDASALEVSGSKRAEPRVPFGQLVERGMLRPGEELYSMNNRHKAKVRAD 313

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GTLI     GSIH+VGA + G+ +CNGW +W +++ G++  I+ LR  +R E+ 
Sbjct: 314 GTLIGNDVKGSIHQVGAALEGAPSCNGWTYWCYKREGKMIPIDILRQQIRAEME 367


>gi|83855283|ref|ZP_00948813.1| modification methylase [Sulfitobacter sp. NAS-14.1]
 gi|83941806|ref|ZP_00954268.1| modification methylase [Sulfitobacter sp. EE-36]
 gi|83843126|gb|EAP82293.1| modification methylase [Sulfitobacter sp. NAS-14.1]
 gi|83847626|gb|EAP85501.1| modification methylase [Sulfitobacter sp. EE-36]
          Length = 366

 Score =  451 bits (1160), Expect = e-125,   Method: Composition-based stats.
 Identities = 214/355 (60%), Positives = 264/355 (74%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II G+ I  +  LPA+SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+FSSF 
Sbjct: 13  LNTIISGDCIEAMNALPAESVDLIFADPPYNLQLRGDLHRPDNSKVDAVDDAWDQFSSFA 72

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTR WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPN
Sbjct: 73  VYDKFTREWLKAARRLLKPNGAIWVIGSYHNIFRVGAALQDAGFWILNDVVWRKSNPMPN 132

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHET+IWA     +  YTFNY+ALKA NE +QMRSDW++PIC+G ERL+++ 
Sbjct: 133 FRGKRFTNAHETMIWAGKDENS-KYTFNYEALKALNEGIQMRSDWVLPICTGHERLKDEM 191

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 192 GDKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEAYRK 251

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRI SV+      L   T KR EPRV F  LVERG+++PG+ L +  G  SA V AD
Sbjct: 252 VAEKRIKSVRKFDKEALQTTTSKRAEPRVPFGQLVERGMLRPGEELYSLNGRYSAKVRAD 311

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTL+     GSIH+VGA    + +CNGW +W ++K G+   I+ LR  +R E+ N
Sbjct: 312 GTLVGNEVKGSIHQVGAAYEKAPSCNGWTYWCYKKDGKRVPIDILRQQIRAEMAN 366


>gi|254461867|ref|ZP_05075283.1| modification methylase SmeIP [Rhodobacterales bacterium HTCC2083]
 gi|206678456|gb|EDZ42943.1| modification methylase SmeIP [Rhodobacteraceae bacterium HTCC2083]
          Length = 371

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 211/355 (59%), Positives = 265/355 (74%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I  G+ I V+  LP  S+DLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF 
Sbjct: 15  LNTIQSGDCIEVMNSLPENSIDLIFADPPYNLQLKGDLHRPDNSRVDAVDDHWDQFSSFA 74

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FT+ WL A RR+LKPNG +WVIGSYHNIFR+G+ LQN  +WILND+VWRKSNPMPN
Sbjct: 75  AYDKFTQDWLKAARRLLKPNGAIWVIGSYHNIFRVGSALQNEGYWILNDVVWRKSNPMPN 134

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHET+IWAS S  A  YTFNY+ALK+ NE +QMRSDW++PIC+G ERL+++ 
Sbjct: 135 FRGKRFTNAHETMIWASKSEGA-KYTFNYEALKSLNEGIQMRSDWVLPICTGHERLKDEA 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           GEK HPTQKPE+LL R+L+ ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y  
Sbjct: 194 GEKAHPTQKPESLLHRVLIGSTNPGDVVLDPFFGTGTTGAVAKMLGREYIGIEREAAYRK 253

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRI +V+      L V T KR EPRV F  LVERG+++PG+ L +      A V AD
Sbjct: 254 VAEKRIKAVRKFDREALRVSTSKRAEPRVPFGQLVERGMLRPGENLYSMNNRHKAKVRAD 313

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTLI     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+ +
Sbjct: 314 GTLIGDDVKGSIHQVGAALEGAPSCNGWTYWSFKRDGKTVPIDVLRQQIRSEMAD 368


>gi|77462007|ref|YP_351511.1| site-specific DNA-methyltransferase [Rhodobacter sphaeroides 2.4.1]
 gi|126460897|ref|YP_001042011.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221640958|ref|YP_002527220.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|332559934|ref|ZP_08414256.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides WS8N]
 gi|77386425|gb|ABA77610.1| Site-specific DNA-methyltransferase [Rhodobacter sphaeroides 2.4.1]
 gi|126102561|gb|ABN75239.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221161739|gb|ACM02719.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides
           KD131]
 gi|332277646|gb|EGJ22961.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides WS8N]
          Length = 372

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 208/355 (58%), Positives = 264/355 (74%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++I+ G+ I  +  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF 
Sbjct: 15  LNQILAGDCIETMRSLPECSVDLIFADPPYNLQLRGDLHRPDNSRVDAVDDHWDQFSSFS 74

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTR WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPN
Sbjct: 75  VYDQFTREWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPN 134

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G+R  NAHETLIWAS    +  YTFNY+ALKA NE VQMRSDW+IPIC+G ERL+++ 
Sbjct: 135 FKGKRLTNAHETLIWASKQEAS-KYTFNYEALKALNEGVQMRSDWVIPICTGHERLKDEQ 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPEALL R++V++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 194 GDKAHPTQKPEALLHRVMVATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREESYRR 253

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           IA +R++ V+      L V   KR EPRV F  LVERG+++PG+ L +      A V AD
Sbjct: 254 IAAERLSRVRRYDASALEVSGSKRAEPRVPFGQLVERGMLRPGEELYSMNNRHKAKVRAD 313

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTLI     GSIH+VGA + G+ +CNGW +W +++ G++  I+ LR  +R E+ +
Sbjct: 314 GTLIGNDVKGSIHQVGAALEGAPSCNGWTYWCYKREGKMIPIDILRQQIRAEMED 368


>gi|99082489|ref|YP_614643.1| DNA methylase N-4/N-6 [Ruegeria sp. TM1040]
 gi|99038769|gb|ABF65381.1| DNA methylase N-4/N-6 [Ruegeria sp. TM1040]
          Length = 389

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 213/354 (60%), Positives = 264/354 (74%), Gaps = 1/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I  +  LP+ S+D+IFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF 
Sbjct: 36  LNTILDGDCIERMASLPSNSIDMIFADPPYNLQLKGQLHRPDNSKVDAVDDEWDQFSSFG 95

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTRAWL   RR+LKPNG LWVIGSYHNIFR+GT LQ+  FWILND+VWRKSNPMPN
Sbjct: 96  VYDQFTRAWLKEARRILKPNGALWVIGSYHNIFRVGTALQDEGFWILNDVVWRKSNPMPN 155

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R+ NAHET+IWAS S  A  YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +
Sbjct: 156 FRGKRYTNAHETMIWASKSEGA-KYTFNYEALKALNEGIQMRSDWVMPICTGHERLKDAN 214

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 215 GDKAHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRK 274

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A +RI +V+      L V   KR EPRV F  LVERG+++PG+ L +      A V AD
Sbjct: 275 VAEERIKNVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRAD 334

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GTLI     GSIH+VGA +  + +CNGW +W F+K G+   I+ LR  +R E+ 
Sbjct: 335 GTLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEMQ 388


>gi|126738667|ref|ZP_01754372.1| modification methylase [Roseobacter sp. SK209-2-6]
 gi|126720466|gb|EBA17172.1| modification methylase [Roseobacter sp. SK209-2-6]
          Length = 368

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 211/355 (59%), Positives = 263/355 (74%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I V+  LP  SVDLIFADPPYNLQL  QL+RPD+S VDAV D WD+FSSF 
Sbjct: 15  LNTILDGDCIEVMSGLPDNSVDLIFADPPYNLQLKNQLHRPDNSKVDAVDDHWDQFSSFA 74

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FT  WL   RR+LKPNG +WVIGSYHNIFR+GT +Q+  FWILND+VWRKSNPMPN
Sbjct: 75  AYDDFTSRWLHQARRILKPNGAIWVIGSYHNIFRVGTAMQDEGFWILNDVVWRKSNPMPN 134

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R+ NAHET+IWAS S +   YTFNY+ALKA NE +QMRSDW++PIC+G ERL++++
Sbjct: 135 FRGKRYTNAHETMIWASKS-EGGKYTFNYEALKALNEGIQMRSDWVLPICTGHERLKDEN 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 194 GDKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEQEESYRK 253

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A  RI +V+      L V T KR  PRV F  LVERG+++PG+ L +      A V AD
Sbjct: 254 VAAARIKAVRKFDREALQVSTSKRAAPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRAD 313

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTLI     GSIH+VGA +  + +CNGW +W F+K G+   I+ LR  +R E+ N
Sbjct: 314 GTLIGDNCKGSIHQVGAHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEMQN 368


>gi|260574051|ref|ZP_05842056.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
 gi|259023517|gb|EEW26808.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
          Length = 375

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 205/354 (57%), Positives = 265/354 (74%), Gaps = 1/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++I++G+ I+ +  LPA S+DLIFADPPYNLQL G L+RPD+SLVDAV D WD+FSSF 
Sbjct: 15  LNQILEGDCIAAMNGLPAASIDLIFADPPYNLQLKGDLHRPDNSLVDAVDDHWDQFSSFA 74

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FT  WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FW+LND+VWRKSNPMPN
Sbjct: 75  AYDKFTHDWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWLLNDVVWRKSNPMPN 134

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R  NAHETLIWAS    +  YTFNY+ALKA N+ VQMRSDW++PIC+G ERL++  
Sbjct: 135 FRGKRLTNAHETLIWASKEEAS-KYTFNYEALKALNDGVQMRSDWVLPICTGHERLKDAA 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL RIL+++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 194 GDKAHPTQKPESLLHRILLATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEIYRQ 253

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            AT+R++ V+      L     KR EPRV F  +VERG+++PG+ L +        V AD
Sbjct: 254 AATERLSRVRRFDATGLETTGSKRAEPRVPFGQVVERGMLRPGEELFSLGNRFKVKVRAD 313

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GTLI     GSIH+VGA + G+ +CNGW +W+F++ G++  I+ LR  +R E+ 
Sbjct: 314 GTLIGNDVKGSIHQVGAALEGAPSCNGWTYWHFKRDGKMVPIDILRQQIRAEME 367


>gi|86136900|ref|ZP_01055478.1| modification methylase [Roseobacter sp. MED193]
 gi|85826224|gb|EAQ46421.1| modification methylase [Roseobacter sp. MED193]
          Length = 389

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 214/355 (60%), Positives = 263/355 (74%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II G+ I V+  LP   +DLIFADPPYNLQL  QL+RPD+S VDAV D WD+FSSF 
Sbjct: 36  LNTIIDGDCIDVMAGLPDNCIDLIFADPPYNLQLKNQLHRPDNSKVDAVDDHWDQFSSFA 95

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FT  WL   RR+LKPNG +WVIGSYHNIFR+GT +Q+  FWILND+VWRKSNPMPN
Sbjct: 96  AYDDFTSRWLHQARRILKPNGAIWVIGSYHNIFRVGTAMQDEGFWILNDVVWRKSNPMPN 155

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R+ NAHET+IWAS S +   YTFNY+ALKA NE +QMRSDW++PIC+G ERL+N+D
Sbjct: 156 FRGKRYTNAHETMIWASKS-EGGKYTFNYEALKALNEGIQMRSDWVLPICTGHERLKNED 214

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           GEK HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 215 GEKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEQEESYRK 274

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A +RI SV+      L V T KR EPRV F  LVERG+++PG  L +      A V AD
Sbjct: 275 VAAERIKSVRKFDREALQVSTSKRAEPRVPFGQLVERGMLRPGDELYSMNQRHKAKVRAD 334

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTLI     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R E+ N
Sbjct: 335 GTLIGDNVKGSIHQVGAHLENAPSCNGWTYWCFKRDGQTVPIDVLRQQIRAEMQN 389


>gi|119384833|ref|YP_915889.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119374600|gb|ABL70193.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 376

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 208/354 (58%), Positives = 263/354 (74%), Gaps = 1/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++I+ G+ I ++  LP  SVDLIFADPPYNLQL G+L+RPD+S VDAV D WD+FS F 
Sbjct: 17  LNQILAGDCIEIMNALPEASVDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFSGFA 76

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTR WL A RR+LKP+G +WVIGSYHNIFR+G  LQN  FWILND+VWRK+NPMPN
Sbjct: 77  AYDRFTRDWLAAARRILKPDGAIWVIGSYHNIFRVGAELQNQGFWILNDVVWRKANPMPN 136

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R  NAHET+IWAS S  A  YTFNY+ALK+ NE VQMRSDW++PIC+G ERL++  
Sbjct: 137 FRGKRLTNAHETMIWASKSEGA-KYTFNYEALKSLNEGVQMRSDWVLPICTGGERLKDAG 195

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE +  Y +
Sbjct: 196 GAKAHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREAAYRE 255

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRIA ++   +  +  +  KR EPRV F  +VERG+++PG+ L +      A V AD
Sbjct: 256 VAEKRIARIRKFDSEAIATIKPKRAEPRVPFGQVVERGMLRPGEELYSLNNRHKAKVRAD 315

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           G+LI     GSIH+VGA + G+ +CNGW +W+F + G +  I+ LR  +R E+ 
Sbjct: 316 GSLIGNDVKGSIHQVGAALEGAPSCNGWTYWHFRREGRMVPIDILRQQIRAEME 369


>gi|83945340|ref|ZP_00957688.1| modification methylase [Oceanicaulis alexandrii HTCC2633]
 gi|83851174|gb|EAP89031.1| modification methylase [Oceanicaulis alexandrii HTCC2633]
          Length = 364

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 210/353 (59%), Positives = 265/353 (75%), Gaps = 1/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I++G+   V++ LP +SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+   F+A
Sbjct: 12  DVILEGDCAEVMKTLPDESVDLIFADPPYNLQLGGDLHRPDNSKVDAVDNDWDQIGDFDA 71

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+ AWL   RRVLKPNG LW IGSYHNIFR+G  LQ++ FWILND++WRKSNPMPNF
Sbjct: 72  YDLFSCAWLEEARRVLKPNGALWTIGSYHNIFRVGAFLQDMGFWILNDVIWRKSNPMPNF 131

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS +  AK  TFNY A+KA N+ VQMRSDW +PIC+G ERL+NKDG
Sbjct: 132 KGTRFTNAHETLIWASKTKDAKP-TFNYAAMKALNDGVQMRSDWTLPICAGGERLKNKDG 190

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+L++++ PGD++LDPFFG+GT+GAVAKKL R +IGIE    Y D+
Sbjct: 191 KKAHPTQKPESLLHRVLLATSNPGDVVLDPFFGTGTTGAVAKKLGRHYIGIEADPGYADV 250

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIA++ P     L V   KR  PR+ F  LVE GL++PG  L  AQG  +A V ADG
Sbjct: 251 ARKRIAAINPTSEDLLQVTQSKRALPRIPFGSLVEAGLLKPGDTLYCAQGRRTAQVRADG 310

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           T+I+G + GSIH++GA V G+ +CNGW FW+  + G L  I+ LR  +R E+ 
Sbjct: 311 TVIAGGQAGSIHQMGAHVQGAPSCNGWTFWHVRQGGALAPIDVLRARIRAEMQ 363


>gi|237814961|ref|ZP_04593959.1| Modification methylase HinfI [Brucella abortus str. 2308 A]
 gi|237789798|gb|EEP64008.1| Modification methylase HinfI [Brucella abortus str. 2308 A]
          Length = 403

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 45  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 104

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 105 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 164

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 165 NFRGRRFQNAHETLIWASREQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 224

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 225 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 284

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 285 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 344

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 345 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 398


>gi|56698274|ref|YP_168647.1| modification methylase [Ruegeria pomeroyi DSS-3]
 gi|56680011|gb|AAV96677.1| modification methylase [Ruegeria pomeroyi DSS-3]
          Length = 367

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 216/355 (60%), Positives = 269/355 (75%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I V+  +P  SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF 
Sbjct: 14  LNTIVSGDCIDVMNAMPEASVDLIFADPPYNLQLKGQLHRPDNSQVDAVDDHWDQFSSFA 73

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A RR+LKPNG +WVIGSYHNIFR+G+ LQ+  +WILND+VWRKSNPMPN
Sbjct: 74  AYDQFTRAWLKAARRLLKPNGAIWVIGSYHNIFRVGSALQDAGYWILNDVVWRKSNPMPN 133

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHET+IWAS S +   YTFNY+ALKA NE VQMRSDW++PIC+G ER+++++
Sbjct: 134 FRGKRFTNAHETMIWASKS-EGGKYTFNYEALKALNEGVQMRSDWVMPICTGHERIKDEN 192

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPEALL R+LVSST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 193 GDKAHPTQKPEALLHRVLVSSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRK 252

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRIA V+      L V   KR EPR+ F  LVERG+++PG+ L +      A V AD
Sbjct: 253 VAEKRIAKVRKFDREALEVSASKRAEPRIPFGQLVERGMLRPGEELYSMNQRHKAKVRAD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTLI     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R EL N
Sbjct: 313 GTLIGQNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAELEN 367


>gi|218510491|ref|ZP_03508369.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli Brasil 5]
 gi|327191944|gb|EGE58926.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CNPAF512]
          Length = 380

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 254/354 (71%), Positives = 305/354 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23  WIDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRA 322

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376


>gi|163739876|ref|ZP_02147283.1| DNA methylase N-4/N-6 [Phaeobacter gallaeciensis BS107]
 gi|163743379|ref|ZP_02150759.1| modification methylase [Phaeobacter gallaeciensis 2.10]
 gi|161383373|gb|EDQ07762.1| modification methylase [Phaeobacter gallaeciensis 2.10]
 gi|161386910|gb|EDQ11272.1| DNA methylase N-4/N-6 [Phaeobacter gallaeciensis BS107]
          Length = 367

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 215/355 (60%), Positives = 263/355 (74%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I V+  LP+ SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF 
Sbjct: 14  LNAILDGDCIEVMSGLPSNSVDLIFADPPYNLQLKGQLHRPDNSKVDAVDDHWDQFSSFG 73

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTR WL   RR+LKPNG++WVIGSYHNIFR+GT +Q+  FWILND++WRKSNPMPN
Sbjct: 74  VYDKFTRDWLKQARRILKPNGSIWVIGSYHNIFRVGTAVQDEGFWILNDVIWRKSNPMPN 133

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R+ NAHET+IWAS S  A  YTFNY+ALKA NE +QMRSDW++PIC+G ERL++  
Sbjct: 134 FRGKRYTNAHETMIWASKSEGA-KYTFNYEALKALNEGLQMRSDWVMPICTGHERLKDDA 192

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE +  Y +
Sbjct: 193 GNKAHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREAAYRE 252

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRI SV+      L V   KR EPRV F  LVERG+++PG  L +      A V AD
Sbjct: 253 VAEKRIKSVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGDELYSMNRRHKAKVRAD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTLI     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R EL N
Sbjct: 313 GTLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAELQN 367


>gi|225626998|ref|ZP_03785037.1| Modification methylase HinfI [Brucella ceti str. Cudo]
 gi|225618655|gb|EEH15698.1| Modification methylase HinfI [Brucella ceti str. Cudo]
          Length = 403

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 45  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 104

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 105 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 164

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 165 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 224

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 225 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 284

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 285 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 344

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 345 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 398


>gi|259417500|ref|ZP_05741419.1| modification methylase CcrMI [Silicibacter sp. TrichCH4B]
 gi|259346406|gb|EEW58220.1| modification methylase CcrMI [Silicibacter sp. TrichCH4B]
          Length = 385

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 212/354 (59%), Positives = 264/354 (74%), Gaps = 1/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I  +  LP+ S+D+IFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF 
Sbjct: 32  LNTILDGDCIERMASLPSNSIDMIFADPPYNLQLKGQLHRPDNSRVDAVDDEWDQFSSFG 91

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTRAWL   RR+LKPNG LWVIGSYHNIFR+G+ LQ+  FWILND+VWRKSNPMPN
Sbjct: 92  VYDQFTRAWLKEARRILKPNGALWVIGSYHNIFRVGSALQDEGFWILNDVVWRKSNPMPN 151

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R+ NAHET+IWAS S  A  YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +
Sbjct: 152 FRGKRYTNAHETMIWASKSEGA-KYTFNYEALKALNEGIQMRSDWVMPICTGHERLKDAN 210

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 211 GDKAHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREESYRK 270

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A +RI +V+      L V   KR EPRV F  LVERG+++PG+ L +      A V AD
Sbjct: 271 VAEERIKNVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRAD 330

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GTLI     GSIH+VGA +  + +CNGW +W F+K G+   I+ LR  +R E+ 
Sbjct: 331 GTLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEMQ 384


>gi|83950882|ref|ZP_00959615.1| modification methylase [Roseovarius nubinhibens ISM]
 gi|83838781|gb|EAP78077.1| modification methylase [Roseovarius nubinhibens ISM]
          Length = 371

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 207/355 (58%), Positives = 262/355 (73%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I V+  LP  SVDLIFADPPYNLQL G+L+RPD+S VDAV D+WD+FSSF 
Sbjct: 15  LNTILSGDCIEVMNSLPEASVDLIFADPPYNLQLKGELHRPDNSQVDAVDDAWDQFSSFA 74

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FT  WL A RR+LKPNG +WVIGSYHNIFR+G  LQN  FWILND+VWRKSNPMPN
Sbjct: 75  AYDKFTTEWLRAARRLLKPNGAIWVIGSYHNIFRVGASLQNEGFWILNDVVWRKSNPMPN 134

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R  NAHET+IWAS   +   YTFNY+ALK+ NE +QMRSDW++PIC+G ERL++ +
Sbjct: 135 FRGKRLTNAHETMIWASKE-EGGKYTFNYEALKSLNEGIQMRSDWVLPICTGHERLKDAN 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y +
Sbjct: 194 GDKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAAYRE 253

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KR+A V+      L V   KR EPRV F  L+ERG+++PG+ L +      A V AD
Sbjct: 254 VAEKRLAKVRKYDREALQVSQSKRAEPRVPFGQLIERGMLRPGENLYSMNLRHKAKVRAD 313

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTLI     GSIH+VGA + G+ +CNGW +W  ++ G+   I+  R  +R E+ +
Sbjct: 314 GTLIGDDIKGSIHQVGAALEGAPSCNGWTYWCIKRDGKQVPIDVFRQQIRAEMAD 368


>gi|190890705|ref|YP_001977247.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CIAT 652]
 gi|190695984|gb|ACE90069.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CIAT 652]
          Length = 380

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 254/354 (71%), Positives = 305/354 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23  WIDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRA 322

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376


>gi|325292178|ref|YP_004278042.1| adenine DNA methyltransferase [Agrobacterium sp. H13-3]
 gi|325060031|gb|ADY63722.1| adenine DNA methyltransferase [Agrobacterium sp. H13-3]
          Length = 380

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 259/354 (73%), Positives = 307/354 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           WKD IIKG+ ++ L+ LP++SVD IFADPPYNLQL G L+RPD SLVDAV D WD+FSSF
Sbjct: 24  WKDSIIKGDCVAALDALPSQSVDAIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFSSF 83

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+G+MLQNL+FWILNDIVWRK+NPMP
Sbjct: 84  EAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGSMLQNLDFWILNDIVWRKTNPMP 143

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWAS  PKAKGYTFNY+ALKA+N+DVQMRSDWL PICSG ERL+  
Sbjct: 144 NFKGRRFQNAHETMIWASRDPKAKGYTFNYEALKASNDDVQMRSDWLFPICSGHERLKGD 203

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 204 DGKKVHPTQKPEALLARIIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 263

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGKR EPRVAFN LVE GL++PGQ+LT+A+   SA + A
Sbjct: 264 DAASARIAAVEPLGKAELTVMTGKRAEPRVAFNTLVESGLVRPGQVLTDAKRRYSAIIRA 323

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG   GSIHR+GAKV G + CNGW FW+FE   +L  I+ LR ++R EL
Sbjct: 324 DGTIASGGTAGSIHRLGAKVQGLDACNGWTFWHFEDGDQLKPIDDLRTIIRSEL 377


>gi|2305232|gb|AAB71350.1| adenine DNA methyltransferase [Sinorhizobium meliloti]
          Length = 376

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 251/372 (67%), Positives = 302/372 (81%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS   SLA          W D IIKG+ ++ L  LP  SVD++FADPPYNLQL G L+RP
Sbjct: 1   MSSVVSLAEISRAARPLNWLDSIIKGDCVAALNALPDHSVDVVFADPPYNLQLGGTLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 61  DQSLVDAVDDDWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L+FW+LNDI+WRK+ P    +GRRFQNAHETLIWA+ + KAKGYTFNY+A+KAAN+DVQM
Sbjct: 121 LHFWVLNDIIWRKTQPDAELQGRRFQNAHETLIWATANAKAKGYTFNYEAMKAANDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSGSERL+  DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGSERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +QDYID A +RIA+V+PLG   L+V+TGK+ EPRVAFN LVE GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLVESGLIK 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG +LT+A+   SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE+   L  
Sbjct: 301 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEEGSVLKP 360

Query: 361 INTLRILVRKEL 372
           I+ LR ++R +L
Sbjct: 361 IDELRSVIRNDL 372


>gi|163745411|ref|ZP_02152771.1| modification methylase [Oceanibulbus indolifex HEL-45]
 gi|161382229|gb|EDQ06638.1| modification methylase [Oceanibulbus indolifex HEL-45]
          Length = 366

 Score =  447 bits (1151), Expect = e-124,   Method: Composition-based stats.
 Identities = 215/355 (60%), Positives = 265/355 (74%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I  +  LPA+SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F+SF+
Sbjct: 13  LNTIVAGDCIEAMNALPAESVDLIFADPPYNLQLRGDLHRPDNSKVDAVDDEWDQFASFK 72

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPN
Sbjct: 73  AYDDFTRAWLKAARRLLKPDGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPN 132

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHET+IWA  S  +  YTFNY+ALKA NE +QMRSDW++PIC+G ERL++  
Sbjct: 133 FRGKRFTNAHETMIWAGKSENS-KYTFNYEALKALNEGIQMRSDWVLPICTGHERLKDDA 191

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL RILV ST PGD+ILDPFFG+GT+GAVAK L R FIGIE +  Y  
Sbjct: 192 GDKAHPTQKPESLLHRILVGSTNPGDVILDPFFGTGTTGAVAKMLGRDFIGIEREAAYRK 251

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRI+ V+   N  L   T KR EPRV F  LVERG+++PG+ L +  G   A V AD
Sbjct: 252 VAEKRISMVRKFDNEALQTTTSKRAEPRVPFGQLVERGMLRPGENLYSMNGRHKAKVRAD 311

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTLI     GSIH+VGA    + +CNGW +W ++K G+   I+ LR  +R E+ N
Sbjct: 312 GTLIGSDVKGSIHQVGAAYEKAPSCNGWTYWCYKKDGKNVPIDILRQQIRAEMAN 366


>gi|159042580|ref|YP_001531374.1| adenine-specific methyltransferase [Dinoroseobacter shibae DFL 12]
 gi|157910340|gb|ABV91773.1| adenine-specific methyltransferase [Dinoroseobacter shibae DFL 12]
          Length = 368

 Score =  447 bits (1151), Expect = e-124,   Method: Composition-based stats.
 Identities = 207/353 (58%), Positives = 270/353 (76%), Gaps = 2/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SF+
Sbjct: 15  LNEILAGDCIEVMNSLPEASVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDAWDRFASFD 74

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           +YD F+  WL A RR+LKPNG +WVIGSYHNIFR+G  LQN  +WILND+VWRKSNPMPN
Sbjct: 75  SYDRFSADWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQNTGYWILNDVVWRKSNPMPN 134

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R  NAHETLIWAS S  A  YTFNY+ALK  NE +QMRSDW++PIC+G ERL+++ 
Sbjct: 135 FRGKRLTNAHETLIWASKSEGA-KYTFNYEALKQLNEGIQMRSDWVLPICTGHERLKDEA 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL R++V++T PGD++LDPFFG+GT+GAVAKKL R FIGIE ++ Y  
Sbjct: 194 GDKAHPTQKPESLLHRVIVATTNPGDVVLDPFFGTGTTGAVAKKLGRDFIGIEREEAYRK 253

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A  R+A V+      L V   KR+EPRV F  LVERG+++PG++LT+  G   A V AD
Sbjct: 254 VAEARLADVRKYDRESLAVTQSKRSEPRVPFGQLVERGMLRPGEVLTSPGGK-VAKVRAD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GTL++    GSIH+VGA +  + +CNGW +W+F++ G+   I+ LR  +R E+
Sbjct: 313 GTLVADQVAGSIHQVGAALEHAPSCNGWTYWHFKRDGKSVPIDLLRQQIRAEM 365


>gi|86356641|ref|YP_468533.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CFN 42]
 gi|86280743|gb|ABC89806.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CFN 42]
          Length = 380

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 254/354 (71%), Positives = 305/354 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23  WVDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRA 322

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376


>gi|254485663|ref|ZP_05098868.1| modification methylase SmeIP [Roseobacter sp. GAI101]
 gi|214042532|gb|EEB83170.1| modification methylase SmeIP [Roseobacter sp. GAI101]
          Length = 366

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 211/355 (59%), Positives = 261/355 (73%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I  +  +P  SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SF 
Sbjct: 13  LNTILAGDCIEAMNAMPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDAWDQFASFA 72

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTR WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPN
Sbjct: 73  VYDKFTREWLKAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPN 132

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHET+IWA     +  YTFNY+ALKA NE +QMRSDW++PIC+G ERL++  
Sbjct: 133 FRGKRFTNAHETMIWAGKDENS-KYTFNYEALKALNEGIQMRSDWVLPICTGHERLKDDA 191

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 192 GDKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEAYRK 251

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRI SV+      L   T KR EPRV F  LVERG+++PG+ L +  G  SA V AD
Sbjct: 252 VAEKRIKSVRKFDKEALQTTTSKRAEPRVPFGQLVERGMLRPGEELYSLNGRYSAKVRAD 311

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTLI     GSIH+VGA    + +CNGW +W ++K G+   I+ LR  +R E+ N
Sbjct: 312 GTLIGNEVKGSIHQVGAAYEKAPSCNGWTYWCYKKDGKRVPIDILRQQIRAEMAN 366


>gi|149912479|ref|ZP_01901013.1| Site-specific DNA-methyltransferase [Roseobacter sp. AzwK-3b]
 gi|149812885|gb|EDM72711.1| Site-specific DNA-methyltransferase [Roseobacter sp. AzwK-3b]
          Length = 371

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 209/355 (58%), Positives = 264/355 (74%), Gaps = 1/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I V+  LP  S+DLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SFE
Sbjct: 15  LNTILDGDCIEVMNSLPEGSIDLIFADPPYNLQLRGDLHRPDNSAVDAVDDAWDQFASFE 74

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FT  WL A RR+LKPNG +WVIGSYHNIFR+G  LQN  FWILND+VWRKSNPMPN
Sbjct: 75  VYDCFTNDWLNAARRLLKPNGAIWVIGSYHNIFRVGAALQNAGFWILNDVVWRKSNPMPN 134

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R  NAHET+IWAS    A  YTFNY+ALK+ N+ VQMRSDW++PIC+G ERL+++ 
Sbjct: 135 FRGKRLTNAHETMIWASKQEGA-KYTFNYEALKSLNDGVQMRSDWVLPICTGHERLKDEH 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y  
Sbjct: 194 GDKAHPTQKPESLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAAYRK 253

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KR+A ++      L V T KR EPRV F  LVERG+++PG+ L +  G   A V AD
Sbjct: 254 VAEKRLAGIRKFDRAALEVSTSKRAEPRVPFGQLVERGMLRPGEELLSMNGRHKAKVRAD 313

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           GTLI     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+ +
Sbjct: 314 GTLIGDDVKGSIHQVGAALEGAPSCNGWTYWCFKRDGKTVPIDILRQQIRAEMAD 368


>gi|85705986|ref|ZP_01037082.1| modification methylase [Roseovarius sp. 217]
 gi|85669574|gb|EAQ24439.1| modification methylase [Roseovarius sp. 217]
          Length = 371

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 208/366 (56%), Positives = 275/366 (75%), Gaps = 1/366 (0%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            + + +++     + II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDA
Sbjct: 3   TMTKAKSAPALPLNTIIAGDCIEVMNSLPEASVDLIFADPPYNLQLKGDLHRPDNSQVDA 62

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           V D+WD+F+SF AYD FT  WL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  +WILN
Sbjct: 63  VDDAWDQFASFAAYDKFTHDWLKAARRLLKPHGAIWVIGSYHNIFRVGAALQDAGYWILN 122

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           D++WRKSNPMPNFRG+R  NAHET+IWAS S  A  YTFNY+ALK+ N+ VQMRSDW++P
Sbjct: 123 DVIWRKSNPMPNFRGKRLTNAHETMIWASKSEGA-KYTFNYEALKSLNDGVQMRSDWVLP 181

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +C+G ERL++  G+K HPTQKPE+LL R+LV ST PGD+ILDPFFG+GT+GAVAK L R 
Sbjct: 182 LCTGHERLKDDKGDKAHPTQKPESLLHRVLVGSTNPGDVILDPFFGTGTTGAVAKMLGRD 241

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
           +IGIE +  Y  +A KR+AS++      L V T KR EPRV F  L+ERG+++PG++LT+
Sbjct: 242 YIGIEREAAYRVVAEKRLASIRKFDRDALQVSTSKRAEPRVPFGQLIERGMLRPGEMLTS 301

Query: 308 AQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
             G  +A V ADGTL++ +  GSIH+VGA + G+ +CNGW +W F++ G++  I+ LR  
Sbjct: 302 MNGKCAAKVRADGTLVADSIKGSIHQVGAHLEGAPSCNGWTYWCFKREGKVVPIDVLRQQ 361

Query: 368 VRKELY 373
           +R E+ 
Sbjct: 362 IRSEME 367


>gi|153007950|ref|YP_001369165.1| DNA methylase N-4/N-6 domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|223635322|sp|A6WWI2|MTB1_OCHA4 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|151559838|gb|ABS13336.1| DNA methylase N-4/N-6 domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 377

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 238/354 (67%), Positives = 298/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ ++ LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVAALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWL+ACRRVLKPNGT+WVIGSYHNIFR+G+ LQ+L FW+LND++WRK+NPMP
Sbjct: 79  QAYDAFTRAWLMACRRVLKPNGTIWVIGSYHNIFRVGSQLQDLGFWLLNDVIWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQSYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARIDAVEPLGKAELTVMTGKRAEPRVAFTSVLEAGLLRPGTVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GAKV G + CNGW FW++E+ G L  I+ LR ++R ++
Sbjct: 319 DGTLAANGEAGSIHRIGAKVQGFDACNGWTFWHYEENGALKPIDALRKVIRDQM 372


>gi|241203450|ref|YP_002974546.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857340|gb|ACS55007.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 379

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 257/354 (72%), Positives = 305/354 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP+ SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23  WVDTIIKGDCVSALEALPSHSVDIIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASPS KAKGYTFNYDALKAAN+DVQMRSDWL PIC+GSERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPSAKAKGYTFNYDALKAANDDVQMRSDWLFPICNGSERLKGE 202

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKAHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDARRRYSAIVRA 322

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376


>gi|154251158|ref|YP_001411982.1| DNA methylase N-4/N-6 domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154155108|gb|ABS62325.1| DNA methylase N-4/N-6 domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 367

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 209/350 (59%), Positives = 265/350 (75%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ I  +  LP KSVDLIFADPPYNLQL G L RPD S VDAV D WDKF+SF+ YD
Sbjct: 15  IIQGDCIEAMNALPEKSVDLIFADPPYNLQLGGGLTRPDQSKVDAVDDDWDKFASFQVYD 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTR W+ A RRVLK  G +WVIGSYHNIFR+G  LQ+L FW++ND+VWRKSNPMPNFRG
Sbjct: 75  EFTRNWMNAARRVLKDTGAIWVIGSYHNIFRVGATLQDLGFWMMNDVVWRKSNPMPNFRG 134

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            RF NAHETLIWA+ S   K YTFNYDA+KA N+D+QMRSDWL+PIC+G ERL++ DG+K
Sbjct: 135 TRFTNAHETLIWATKSADQKKYTFNYDAMKALNDDLQMRSDWLLPICTGGERLKDGDGDK 194

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPEALL R+L+++T  GD +LDPFFG+GT+GAVAKKL R+F+GIE ++ YI +A 
Sbjct: 195 AHPTQKPEALLHRVLLATTNAGDTVLDPFFGTGTTGAVAKKLGRNFVGIEREERYIKVAR 254

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +RI  ++     +L V T K+ E R+ F  L+ERGL++PG +LT+     +A V ADG++
Sbjct: 255 ERIRLIKTGAPEDLKVTTSKKAEVRIPFGTLIERGLLEPGAVLTDPAKRHAARVRADGSI 314

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           +     GSIH++GA V G + CNGW FW+F+  G+L  I+ LR  VR E+
Sbjct: 315 VCRDATGSIHKIGAHVQGLDACNGWTFWHFKTDGKLKPIDILRQKVRAEM 364


>gi|159184467|ref|NP_353817.2| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium tumefaciens str. C58]
 gi|159139778|gb|AAK86602.2| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium tumefaciens str. C58]
          Length = 381

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 255/354 (72%), Positives = 303/354 (85%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           WKD IIKG+ ++ L+ LP++SVD IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 24  WKDSIIKGDCVAALDALPSQSVDAIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 83

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+G MLQNL+FWILNDIVWRK+NPMP
Sbjct: 84  DAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGAMLQNLDFWILNDIVWRKTNPMP 143

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWAS  PKAK YTFNYDALKA+N+DVQMRSDWL PICSG ERL+  
Sbjct: 144 NFKGRRFQNAHETMIWASRDPKAKSYTFNYDALKASNDDVQMRSDWLFPICSGHERLKGD 203

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 204 DGKKVHPTQKPEALLARIIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 263

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RI +V+PLG  ELTV+TGK+ EPRVAFN LVE GL++PGQ+LT+A+   SA + A
Sbjct: 264 DAASARITAVEPLGKAELTVMTGKKAEPRVAFNTLVESGLVRPGQVLTDARRRYSAIIRA 323

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL SG   GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R E+
Sbjct: 324 DGTLASGGTAGSIHRLGAKVQGLDACNGWTFWHFEDGDALKPIDDLRTIIRSEM 377


>gi|116250848|ref|YP_766686.1| modification methylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255496|emb|CAK06572.1| putative modification methylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 380

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 257/354 (72%), Positives = 305/354 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP+ SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23  WVDTIIKGDCVSALEALPSHSVDIIFADPPYNLQLGGTLHRPDQSLVDAVDDDWDQFASF 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASPS KAKGYTFNYDALKAAN+DVQMRSDWL PIC+GSERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPSAKAKGYTFNYDALKAANDDVQMRSDWLFPICNGSERLKGE 202

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKAHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDARRRYSAIVRA 322

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376


>gi|255262501|ref|ZP_05341843.1| modification methylase CcrMI [Thalassiobium sp. R2A62]
 gi|255104836|gb|EET47510.1| modification methylase CcrMI [Thalassiobium sp. R2A62]
          Length = 369

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 210/353 (59%), Positives = 266/353 (75%), Gaps = 1/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I  +  LPA SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+FSSF+
Sbjct: 15  LNTILDGDCIERMNSLPAGSVDLIFADPPYNLQLRGDLHRPDNSKVDAVDNDWDQFSSFD 74

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FT+AWL A RR+LKPNG +W IGSYHN+FR+G  LQN  FWILND+VWRKSNPMPN
Sbjct: 75  VYDKFTKAWLKAARRLLKPNGAIWCIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPN 134

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS S  A  YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +
Sbjct: 135 FRGKRFTNAHETLIWASKSEGA-KYTFNYEALKALNEGIQMRSDWVLPICTGHERLKDDN 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL R+L+++T PGD++LDPFFG+GT+GAVAK L R FIGIE +  Y +
Sbjct: 194 GDKAHPTQKPESLLHRVLLATTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREVAYRE 253

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRIA ++      L V   KR EPRV F  LVERG+++PG+ L +      A V AD
Sbjct: 254 VAEKRIAKIRKFDKEALQVSQSKRAEPRVPFGQLVERGMLRPGEELYSINKRHKAKVRAD 313

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GTLI     GSIH+VGA + G+ +CNGW +W+++K G+   I+ LR  +R E+
Sbjct: 314 GTLIGDDVKGSIHQVGAHLEGAPSCNGWTYWHYKKEGKKVPIDLLRQQIRAEM 366


>gi|14091014|gb|AAK53552.1|AF327563_1 cell cycle-regulated methyltransferase CcrM [Agrobacterium
           tumefaciens]
          Length = 381

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 254/354 (71%), Positives = 302/354 (85%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           WKD IIKG+ ++ L+ LP++SVD IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 24  WKDSIIKGDCVAALDALPSQSVDAIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 83

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+G MLQNL+FWILNDIVWRK+NPMP
Sbjct: 84  DAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGAMLQNLDFWILNDIVWRKTNPMP 143

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWAS  PKAK YTFNYDALKA+N+DVQMRSDWL PICSG ERL+  
Sbjct: 144 NFKGRRFQNAHETMIWASRDPKAKSYTFNYDALKASNDDVQMRSDWLFPICSGHERLKGD 203

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 204 DGKKVHPTQKPEALLARIIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 263

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RI +V+PLG  ELTV+TGK+ EPRVAFN LVE G ++PGQ+LT+A+   SA + A
Sbjct: 264 DAASARITAVEPLGKAELTVMTGKKAEPRVAFNTLVESGFVRPGQVLTDARRRYSAIIRA 323

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL SG   GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R E+
Sbjct: 324 DGTLASGGTAGSIHRLGAKVQGLDACNGWTFWHFEDGDALKPIDDLRTIIRSEM 377


>gi|239831358|ref|ZP_04679687.1| Modification methylase HinfI [Ochrobactrum intermedium LMG 3301]
 gi|239823625|gb|EEQ95193.1| Modification methylase HinfI [Ochrobactrum intermedium LMG 3301]
          Length = 443

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 239/354 (67%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ ++ LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 85  WLDSIIKGDCVAALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 144

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWL+ACRRVLKPNGT+WVIGSYHNIFR+G+ LQ+L FW+LNDI+WRK+NPMP
Sbjct: 145 QAYDAFTRAWLMACRRVLKPNGTIWVIGSYHNIFRVGSQLQDLGFWLLNDIIWRKTNPMP 204

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 205 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 264

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 265 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQSYI 324

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L++ +   +A V A
Sbjct: 325 DAATARIDAVEPLGKAELTVMTGKRAEPRVAFTSVIEAGLLRPGTVLSDERRRFAAIVRA 384

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GAKV G + CNGW FW++E+ G L  I+ LR ++R ++
Sbjct: 385 DGTLAANGEAGSIHRMGAKVQGFDACNGWTFWHYEENGTLKPIDALRKVIRDQM 438


>gi|189023721|ref|YP_001934489.1| Adenine-specific methyltransferase [Brucella abortus S19]
 gi|260754270|ref|ZP_05866618.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260757489|ref|ZP_05869837.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761313|ref|ZP_05873656.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883294|ref|ZP_05894908.1| modification methylase BabI [Brucella abortus bv. 9 str. C68]
 gi|261213516|ref|ZP_05927797.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|297247885|ref|ZP_06931603.1| adenine-specific DNA-methyltransferase [Brucella abortus bv. 5 str.
           B3196]
 gi|223635297|sp|B2S9Y5|MTB1_BRUA1 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|189019293|gb|ACD72015.1| Adenine-specific methyltransferase [Brucella abortus S19]
 gi|260667807|gb|EEX54747.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260671745|gb|EEX58566.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674378|gb|EEX61199.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260872822|gb|EEX79891.1| modification methylase BabI [Brucella abortus bv. 9 str. C68]
 gi|260915123|gb|EEX81984.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|297175054|gb|EFH34401.1| adenine-specific DNA-methyltransferase [Brucella abortus bv. 5 str.
           B3196]
          Length = 386

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 28  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 87

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 88  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 147

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 148 NFRGRRFQNAHETLIWASREQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 207

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 208 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 267

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 268 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 327

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 328 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 381


>gi|62289472|ref|YP_221265.1| modification methylase BabI [Brucella abortus bv. 1 str. 9-941]
 gi|82699397|ref|YP_413971.1| cytosine-N4-specific DNA-methyltransferase [Brucella melitensis
           biovar Abortus 2308]
 gi|254688783|ref|ZP_05152037.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 6
           str. 870]
 gi|254693266|ref|ZP_05155094.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 3
           str. Tulya]
 gi|254696912|ref|ZP_05158740.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254729815|ref|ZP_05188393.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 4
           str. 292]
 gi|256257029|ref|ZP_05462565.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 9
           str. C68]
 gi|260545776|ref|ZP_05821517.1| modification methylase BabI [Brucella abortus NCTC 8038]
 gi|88913544|sp|Q2YMK2|MTB1_BRUA2 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|90109766|sp|P0C116|MTB1_BRUAB RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|2305234|gb|AAB71351.1| adenine DNA methyltransferase [Brucella abortus]
 gi|62195604|gb|AAX73904.1| BabI, modification methylase BabI [Brucella abortus bv. 1 str.
           9-941]
 gi|82615498|emb|CAJ10472.1| SAM (and some other nucleotide) binding motif:Site-specific
           DNA-methyltransferase (cytosine-N4-specific):N-6
           Adenine-specific [Brucella melitensis biovar Abortus
           2308]
 gi|260097183|gb|EEW81058.1| modification methylase BabI [Brucella abortus NCTC 8038]
          Length = 377

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASREQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 372


>gi|209548255|ref|YP_002280172.1| DNA methylase N-4/N-6 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534011|gb|ACI53946.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 380

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 253/354 (71%), Positives = 305/354 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23  WVDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRA 322

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG + GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 323 DGTVASGGDAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376


>gi|294675758|ref|YP_003576373.1| adenine-specific DNA-methyltransferase [Rhodobacter capsulatus SB
           1003]
 gi|294474578|gb|ADE83966.1| site-specific DNA-methyltransferase (adenine-specific) [Rhodobacter
           capsulatus SB 1003]
          Length = 367

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 206/354 (58%), Positives = 265/354 (74%), Gaps = 1/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++I+ G+ I V+ +LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F SF+
Sbjct: 15  LNEILAGDCIDVMNRLPEASVDLIFADPPYNLQLRGDLHRPDNSKVDAVDDAWDQFGSFD 74

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTR WL A +R+LKPNG +WVIGSYHN+FR+G  LQN  FWILND+VWRKSNPMPN
Sbjct: 75  HYDTFTRDWLAAAKRILKPNGAIWVIGSYHNVFRLGAELQNQGFWILNDVVWRKSNPMPN 134

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R  NAHETLIWAS S  A  YTFNY+ALKA NE +QMRSDW++PIC+G+ERL++  
Sbjct: 135 FRGKRLTNAHETLIWASKSEGA-KYTFNYEALKALNEGIQMRSDWVLPICTGNERLKDDA 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL RI++ +T  GD++LDPFFG+GT+GAVAK L R FIGIE ++ Y +
Sbjct: 194 GDKAHPTQKPESLLHRIILGTTNAGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEAYRE 253

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A KRI  V+      L +   KR EPRV F  LVERG+++PG+ L +      A V AD
Sbjct: 254 AARKRIDKVRKFDREALEITGSKRAEPRVPFGQLVERGMLRPGEELYSIGNRFKAKVRAD 313

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GTL+     GSIH+VGA + G+ +CNGW +W+F++ G++  I+ LR  +R E+ 
Sbjct: 314 GTLVGNDVKGSIHQVGAHLEGAPSCNGWTYWHFKRDGKMVPIDLLRQQIRAEMN 367


>gi|148560742|ref|YP_001258505.1| modification methylase BabI [Brucella ovis ATCC 25840]
 gi|223635317|sp|A5VP58|MTB1_BRUO2 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|148371999|gb|ABQ61978.1| modification methylase BabI [Brucella ovis ATCC 25840]
          Length = 386

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 28  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 87

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 88  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 147

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 148 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 207

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 208 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 267

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 268 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 327

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 328 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 381


>gi|17987727|ref|NP_540361.1| adenine-specific methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|81851486|sp|Q8YFS6|MTB1_BRUME RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|17983446|gb|AAL52625.1| adenine-specific methyltransferase [Brucella melitensis bv. 1 str.
           16M]
          Length = 403

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 242/354 (68%), Positives = 298/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+L   SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 45  WLDSIIKGDCVSALERLSDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 104

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 105 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 164

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 165 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 224

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 225 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 284

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 285 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 344

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 345 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 398


>gi|167648322|ref|YP_001685985.1| DNA methylase N-4/N-6 domain-containing protein [Caulobacter sp.
           K31]
 gi|167350752|gb|ABZ73487.1| DNA methylase N-4/N-6 domain protein [Caulobacter sp. K31]
          Length = 358

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 262/352 (74%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7   TIIQGDCIEAMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILND++WRKSNPMPNF+
Sbjct: 67  DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDVIWRKSNPMPNFK 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW +P+C+G ER++  DG 
Sbjct: 127 GTRFANAHETLIWASKSQGAKRYTFNYDALKMANDEVQMRSDWTLPLCTGEERIKGADGN 186

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R F+GIE + DYI+ A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRRFVGIERESDYIEHA 246

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RIA V P+   +L V+  KR+EPRV F  +VE GL+ PG  L  A+G+ +A V ADG+
Sbjct: 247 KARIAKVVPIAPGDLDVMGSKRSEPRVPFGNIVEAGLLNPGDTLYCAKGSHAAKVRADGS 306

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           +  G   GSIH+VGA V  +  CNGW +W+F+    L  I+ LR  VR  + 
Sbjct: 307 ITVGDLSGSIHKVGALVQSAPACNGWTYWHFKTDKGLAPIDVLRSQVRAGMN 358


>gi|23501392|ref|NP_697519.1| modification methylase BabI [Brucella suis 1330]
 gi|161618464|ref|YP_001592351.1| modification methylase HinfI [Brucella canis ATCC 23365]
 gi|163842773|ref|YP_001627177.1| modification methylase HinfI [Brucella suis ATCC 23445]
 gi|254701294|ref|ZP_05163122.1| modification methylase HinfI [Brucella suis bv. 5 str. 513]
 gi|254703839|ref|ZP_05165667.1| modification methylase HinfI [Brucella suis bv. 3 str. 686]
 gi|254707782|ref|ZP_05169610.1| modification methylase HinfI [Brucella pinnipedialis M163/99/10]
 gi|254709634|ref|ZP_05171445.1| modification methylase HinfI [Brucella pinnipedialis B2/94]
 gi|254712950|ref|ZP_05174761.1| modification methylase HinfI [Brucella ceti M644/93/1]
 gi|254716696|ref|ZP_05178507.1| modification methylase HinfI [Brucella ceti M13/05/1]
 gi|254718664|ref|ZP_05180475.1| modification methylase HinfI [Brucella sp. 83/13]
 gi|256031127|ref|ZP_05444741.1| modification methylase HinfI [Brucella pinnipedialis M292/94/1]
 gi|256159203|ref|ZP_05457014.1| modification methylase HinfI [Brucella ceti M490/95/1]
 gi|256254530|ref|ZP_05460066.1| modification methylase HinfI [Brucella ceti B1/94]
 gi|256368944|ref|YP_003106450.1| modification methylase BabI [Brucella microti CCM 4915]
 gi|260168258|ref|ZP_05755069.1| modification methylase BabI [Brucella sp. F5/99]
 gi|260566907|ref|ZP_05837377.1| modification methylase BabI [Brucella suis bv. 4 str. 40]
 gi|261218502|ref|ZP_05932783.1| modification methylase BabI [Brucella ceti M13/05/1]
 gi|261221708|ref|ZP_05935989.1| modification methylase BabI [Brucella ceti B1/94]
 gi|261315268|ref|ZP_05954465.1| modification methylase BabI [Brucella pinnipedialis M163/99/10]
 gi|261317167|ref|ZP_05956364.1| modification methylase BabI [Brucella pinnipedialis B2/94]
 gi|261320648|ref|ZP_05959845.1| modification methylase BabI [Brucella ceti M644/93/1]
 gi|261751836|ref|ZP_05995545.1| modification methylase BabI [Brucella suis bv. 5 str. 513]
 gi|261754491|ref|ZP_05998200.1| modification methylase BabI [Brucella suis bv. 3 str. 686]
 gi|261757722|ref|ZP_06001431.1| modification methylase BabI [Brucella sp. F5/99]
 gi|265983646|ref|ZP_06096381.1| modification methylase BabI [Brucella sp. 83/13]
 gi|265988205|ref|ZP_06100762.1| modification methylase BabI [Brucella pinnipedialis M292/94/1]
 gi|265997671|ref|ZP_06110228.1| modification methylase BabI [Brucella ceti M490/95/1]
 gi|294851866|ref|ZP_06792539.1| modification methylase BabI [Brucella sp. NVSL 07-0026]
 gi|306837787|ref|ZP_07470651.1| modification methylase BabI [Brucella sp. NF 2653]
 gi|306845119|ref|ZP_07477699.1| modification methylase BabI [Brucella sp. BO1]
 gi|81847171|sp|Q8G242|MTB1_BRUSU RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|223635299|sp|B0CKH7|MTB1_BRUSI RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|223635316|sp|A9M916|MTB1_BRUC2 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|23347288|gb|AAN29434.1| modification methylase BabI [Brucella suis 1330]
 gi|161335275|gb|ABX61580.1| Modification methylase HinfI [Brucella canis ATCC 23365]
 gi|163673496|gb|ABY37607.1| Modification methylase HinfI [Brucella suis ATCC 23445]
 gi|255999102|gb|ACU47501.1| modification methylase BabI [Brucella microti CCM 4915]
 gi|260156425|gb|EEW91505.1| modification methylase BabI [Brucella suis bv. 4 str. 40]
 gi|260920292|gb|EEX86945.1| modification methylase BabI [Brucella ceti B1/94]
 gi|260923591|gb|EEX90159.1| modification methylase BabI [Brucella ceti M13/05/1]
 gi|261293338|gb|EEX96834.1| modification methylase BabI [Brucella ceti M644/93/1]
 gi|261296390|gb|EEX99886.1| modification methylase BabI [Brucella pinnipedialis B2/94]
 gi|261304294|gb|EEY07791.1| modification methylase BabI [Brucella pinnipedialis M163/99/10]
 gi|261737706|gb|EEY25702.1| modification methylase BabI [Brucella sp. F5/99]
 gi|261741589|gb|EEY29515.1| modification methylase BabI [Brucella suis bv. 5 str. 513]
 gi|261744244|gb|EEY32170.1| modification methylase BabI [Brucella suis bv. 3 str. 686]
 gi|262552139|gb|EEZ08129.1| modification methylase BabI [Brucella ceti M490/95/1]
 gi|264660402|gb|EEZ30663.1| modification methylase BabI [Brucella pinnipedialis M292/94/1]
 gi|264662238|gb|EEZ32499.1| modification methylase BabI [Brucella sp. 83/13]
 gi|294820455|gb|EFG37454.1| modification methylase BabI [Brucella sp. NVSL 07-0026]
 gi|306274534|gb|EFM56329.1| modification methylase BabI [Brucella sp. BO1]
 gi|306407128|gb|EFM63343.1| modification methylase BabI [Brucella sp. NF 2653]
          Length = 377

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 372


>gi|149202923|ref|ZP_01879894.1| modification methylase [Roseovarius sp. TM1035]
 gi|149143469|gb|EDM31505.1| modification methylase [Roseovarius sp. TM1035]
          Length = 370

 Score =  444 bits (1143), Expect = e-123,   Method: Composition-based stats.
 Identities = 205/354 (57%), Positives = 271/354 (76%), Gaps = 2/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SF 
Sbjct: 15  LNTIIAGDCIEVMNSLPEASVDLIFADPPYNLQLKGDLHRPDNSQVDAVDDAWDQFASFA 74

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FT+ WL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  +WILND++WRKSNPMPN
Sbjct: 75  AYDKFTQDWLKAARRLLKPHGAIWVIGSYHNIFRVGAALQDAGYWILNDVIWRKSNPMPN 134

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R  NAHET+IWAS S  A  YTFNY+ALK+ N+ VQMRSDW++P+C+G ERL++ +
Sbjct: 135 FRGKRLTNAHETMIWASKSEGA-KYTFNYEALKSLNDGVQMRSDWVLPLCTGHERLKDDN 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y  
Sbjct: 194 GDKAHPTQKPESLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAAYRS 253

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KR+A+++      L V T KR EPRV F  L+ERG+++PG++LT+  G  +A V AD
Sbjct: 254 VAEKRLANIRKFDRDALQVSTSKRAEPRVPFGQLIERGMLRPGEVLTSINGK-AAKVRAD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GTL++    GSIH++GA + G+ +CNGW +W F++ G++  I+ LR  +R E+ 
Sbjct: 313 GTLVADGINGSIHQIGAHLEGAPSCNGWTYWCFKREGKVVPIDVLRQQIRSEME 366


>gi|114707681|ref|ZP_01440576.1| adenine DNA methyltransferase [Fulvimarina pelagi HTCC2506]
 gi|114536925|gb|EAU40054.1| adenine DNA methyltransferase [Fulvimarina pelagi HTCC2506]
          Length = 378

 Score =  444 bits (1143), Expect = e-123,   Method: Composition-based stats.
 Identities = 232/356 (65%), Positives = 291/356 (81%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +W+++I++G+ ++ +E+LPA+SVD+IFADPPYNLQL G L RPDHS VDAV D+WD+F 
Sbjct: 17  IDWRNQILQGHCVTEMERLPAESVDVIFADPPYNLQLGGDLMRPDHSKVDAVDDAWDQFE 76

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           SF+AYDAFTRAWLLA RRVLKPNGTLWVIGSYHNIFR+G  LQ+L +WILNDIVWRK+NP
Sbjct: 77  SFQAYDAFTRAWLLAARRVLKPNGTLWVIGSYHNIFRVGASLQDLGYWILNDIVWRKTNP 136

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           MPNFRG+RFQNAHETLIWAS   KAK YTFNY+ALKA+N+DVQMRSDWL PICSG ERL+
Sbjct: 137 MPNFRGKRFQNAHETLIWASRDAKAKSYTFNYEALKASNDDVQMRSDWLFPICSGGERLK 196

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           N+DG K HPTQKPEALL+RIL++STKPGD++LDPFFG+GT+GAVAK+L R F+GIE +++
Sbjct: 197 NEDGAKAHPTQKPEALLARILLASTKPGDVVLDPFFGTGTTGAVAKRLGRDFVGIEREEE 256

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
           Y+ IA +RIA V+PL + +L +  GKR EPRV F  LVE GL+ PG  LT+++    A V
Sbjct: 257 YVKIAQQRIADVEPLDDDDLKMAAGKRAEPRVPFASLVEAGLVTPGTELTDSKRRYRARV 316

Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            ADGT+  G +  SIHR+GA+V G + CNGW FW+ ++   L  I+ LR L R+ +
Sbjct: 317 RADGTIAVGDDAASIHRIGARVQGLDACNGWTFWHVKEGKNLTPIDELRQLARQRM 372


>gi|126734212|ref|ZP_01749959.1| modification methylase [Roseobacter sp. CCS2]
 gi|126717078|gb|EBA13942.1| modification methylase [Roseobacter sp. CCS2]
          Length = 369

 Score =  444 bits (1143), Expect = e-123,   Method: Composition-based stats.
 Identities = 214/353 (60%), Positives = 268/353 (75%), Gaps = 1/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I V+  LPA SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F SF+
Sbjct: 15  LNTIVDGDCIDVMNSLPAGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDAWDQFDSFK 74

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTR WL A RR+LKPNG +WVIGSYHN+FR+G  LQN  FWILND+VWRKSNPMPN
Sbjct: 75  VYDKFTREWLAAARRLLKPNGAIWVIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPN 134

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R  NAHETLIWAS    +  YTFNY+ALKA NE VQMRSDW++PIC+G ERL+N+ 
Sbjct: 135 FRGKRLTNAHETLIWASKEEAS-KYTFNYEALKALNEGVQMRSDWVLPICTGHERLKNEA 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKP++LL R+LV++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 194 GDKAHPTQKPQSLLHRVLVATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREESYRK 253

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRI + +   N  L V T KR EPRVAF +LVERG+++PG+ L +  G   A V AD
Sbjct: 254 VAEKRIKNTRKFDNEALQVSTSKRAEPRVAFGVLVERGMLRPGEELWSMNGRHKAKVRAD 313

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GTLI     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+
Sbjct: 314 GTLIGDDIKGSIHQVGAHLEGAPSCNGWTYWQFKRDGQKVPIDLLRQQIRSEM 366


>gi|83594540|ref|YP_428292.1| DNA methylase N-4/N-6 [Rhodospirillum rubrum ATCC 11170]
 gi|83577454|gb|ABC24005.1| DNA methylase N-4/N-6 [Rhodospirillum rubrum ATCC 11170]
          Length = 367

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 202/359 (56%), Positives = 268/359 (74%), Gaps = 5/359 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I +G+SI V+  LP+ S+D+IFADPPYN+ L G+L RPD+S VD V D WD+F S  A
Sbjct: 8   NRIYQGDSIEVMRSLPSASIDMIFADPPYNMMLGGELLRPDNSRVDGVDDEWDRFESQRA 67

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  FTR+WL   RR+LK NGT+WVIGSYHNI+R+G  LQ+L FW LND+VWRK+NPMPNF
Sbjct: 68  YAEFTRSWLREARRLLKDNGTIWVIGSYHNIYRVGAELQDLGFWTLNDVVWRKANPMPNF 127

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETL+W + S +A  YTFNY+A+K+ NE +QMRSDW +P+C+G ERL+ +DG
Sbjct: 128 KGTRFTNAHETLLWCAKSAEA-RYTFNYEAMKSLNEGLQMRSDWTLPLCNGKERLKAEDG 186

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+HPTQKPE+LL R+++SST PGDIILDPFFG+GT+GAVAK L R +IG+E  + YI  
Sbjct: 187 KKVHPTQKPESLLYRVILSSTHPGDIILDPFFGTGTTGAVAKLLGRQWIGLERDEAYIAA 246

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RIA V+P+ ++ L +   K++EPR+ F  +VERGL+ PG +L ++Q   +A V ADG
Sbjct: 247 ARQRIAQVEPIKDLRLLITPSKKSEPRIPFGTVVERGLLAPGSLLCDSQRRWTAKVRADG 306

Query: 321 TLI----SGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYNC 375
           TL+     G   GSIH+VGA V G+  CNGW FW+ ++ G    I+ LR  VR EL  C
Sbjct: 307 TLVATSSHGDHRGSIHQVGAAVQGAPACNGWTFWHIDRPGGAVPIDVLRQQVRAELEAC 365


>gi|16124633|ref|NP_419197.1| modification methylase CcrMI [Caulobacter crescentus CB15]
 gi|221233321|ref|YP_002515757.1| adenine-specific methyltransferase ccrM [Caulobacter crescentus
           NA1000]
 gi|239977504|sp|B8GZ33|MTC1_CAUCN RecName: Full=Modification methylase CcrMI; Short=M.CcrMI; AltName:
           Full=Adenine-specific methyltransferase CcrMI
 gi|239977505|sp|P0CAW2|MTC1_CAUCR RecName: Full=Modification methylase CcrMI; Short=M.CcrMI; AltName:
           Full=Adenine-specific methyltransferase CcrMI
 gi|13421535|gb|AAK22365.1| modification methylase CcrMI [Caulobacter crescentus CB15]
 gi|220962493|gb|ACL93849.1| adenine-specific methyltransferase ccrM [Caulobacter crescentus
           NA1000]
          Length = 358

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 213/352 (60%), Positives = 258/352 (73%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7   TIIHGDCIEQMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILNDIVWRKSNPMPNF+
Sbjct: 67  DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNFK 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW IP+C+G ER++  DG+
Sbjct: 127 GTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADGQ 186

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + +Y++ A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYLEHA 246

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RIA V P+   +L V+  KR EPRV F  +VE GL+ PG  L  ++G   A V  DG+
Sbjct: 247 KARIAKVVPIAPEDLDVMGSKRAEPRVPFGTIVEAGLLSPGDTLYCSKGTHVAKVRPDGS 306

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           +  G   GSIH++GA V  +  CNGW +W+F+    L  I+ LR  VR  + 
Sbjct: 307 ITVGDLSGSIHKIGALVQSAPACNGWTYWHFKTDAGLAPIDVLRAQVRAGMN 358


>gi|163733085|ref|ZP_02140529.1| modification methylase [Roseobacter litoralis Och 149]
 gi|161393620|gb|EDQ17945.1| modification methylase [Roseobacter litoralis Och 149]
          Length = 366

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 212/368 (57%), Positives = 273/368 (74%), Gaps = 2/368 (0%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           + + + +++     + II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VD
Sbjct: 1   MMMTKTKSAAALPLNTIIDGDCIEVMNGLPEASVDLIFADPPYNLQLKGDLHRPDNSRVD 60

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
           AV D WD+F+SF+ YD FT+AWL A RR+LKP+G +WVIGSYHNIFR+G  LQN  +WIL
Sbjct: 61  AVDDEWDQFASFKVYDDFTKAWLKAARRILKPDGAIWVIGSYHNIFRVGAELQNQGYWIL 120

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           ND+VWRKSNPMPNFRG+RF NAHET+IWA    ++  YTFNY+ALKA NE +QMRSDW++
Sbjct: 121 NDVVWRKSNPMPNFRGKRFTNAHETMIWAGR-DESSKYTFNYEALKALNEGIQMRSDWVL 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           PIC+G ERL++++G+K HPTQKPE+LL R+LV +T PGD+ILDPFFG+GT+GAVAK L R
Sbjct: 180 PICTGHERLKDENGDKAHPTQKPESLLHRVLVGATNPGDVILDPFFGTGTTGAVAKMLGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
            FIGIE +  Y  +A KRIA V+      L V   KR EPRV F  LVERG+++PG+ L 
Sbjct: 240 DFIGIEREAAYRKVAEKRIAKVRKFDREALQVSVSKRAEPRVPFGQLVERGMLRPGEALY 299

Query: 307 NAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRI 366
           + +G   A V ADGTLI     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR 
Sbjct: 300 SPRGQ-VAKVRADGTLIGNDVKGSIHQVGAHLEGAPSCNGWTYWTFKQDGKKVPIDVLRQ 358

Query: 367 LVRKELYN 374
            +R E+ N
Sbjct: 359 QIRSEMTN 366


>gi|329888142|ref|ZP_08266740.1| modification methylase CcrMI [Brevundimonas diminuta ATCC 11568]
 gi|328846698|gb|EGF96260.1| modification methylase CcrMI [Brevundimonas diminuta ATCC 11568]
          Length = 356

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 209/353 (59%), Positives = 262/353 (74%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I++G+ I VL+ LP KSVD++FADPPYNLQL G L RPD+S VDAV D WDKF SF A
Sbjct: 4   DVILRGDCIEVLKGLPDKSVDMVFADPPYNLQLGGDLLRPDNSKVDAVDDDWDKFDSFAA 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL  CRRVLK  G+LWVIGSYHNIFR+G  +Q+L FW+LNDI+WRKSNPMPNF
Sbjct: 64  YDAFTRAWLGECRRVLKDEGSLWVIGSYHNIFRLGAAMQDLGFWVLNDIIWRKSNPMPNF 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWA+ S + K YTFNYDALKA NED QMRSDW + +C+G ERL++++G
Sbjct: 124 KGTRFTNAHETLIWAAKSREQKRYTFNYDALKAFNEDTQMRSDWTLALCTGGERLKDENG 183

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R+L+S+++ GD++LDPFFG+GT+GA AK+L R FIGIE  + Y  +
Sbjct: 184 DKAHPTQKPEALLHRVLLSASRVGDVVLDPFFGTGTTGAAAKRLGRRFIGIERDETYAKL 243

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI +V P    +L V   K+ EP+V F  LVE GL+ PG  L   +G   A V ADG
Sbjct: 244 AEKRIKAVIPAAPEDLVVTGSKKAEPKVPFGALVEAGLLAPGDKLYCPKGEREARVRADG 303

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           +L+SG   GSIH++GA +  +  CNGW +W F+    L  I+ LR  +R  + 
Sbjct: 304 SLVSGALTGSIHKLGALLENAPACNGWTYWRFKTDTGLRPIDALRAEIRAGMQ 356


>gi|260460279|ref|ZP_05808531.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033924|gb|EEW35183.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 377

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 239/373 (64%), Positives = 296/373 (79%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS    L          EW D I+KG+ ++ L++LP KS+D+IFADPPYNLQL+G L+RP
Sbjct: 1   MSAVRLLDELSLAPQQSEWLDTILKGDCVAALDRLPEKSIDVIFADPPYNLQLDGDLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D S VDAV D WD+F SFEAYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G  +Q+
Sbjct: 61  DQSKVDAVDDDWDRFESFEAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAKMQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L FWILND+VWRK+NPMPNFRGRRFQNAHET+IWAS   K KGYTFNY+ALKA+N+D+QM
Sbjct: 121 LGFWILNDVVWRKTNPMPNFRGRRFQNAHETMIWASRDQKGKGYTFNYEALKASNDDIQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PIC+G ERL+N +G+KLHPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICTGGERLKNDNGDKLHPTQKPEALLARIMMASTKPGDIVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +Q YID A +RI +V+PL + +LTVLTGKR EPRVAF  L++ GL+ 
Sbjct: 241 AKRLGRHFVGIEREQAYIDAANERIDAVRPLEDADLTVLTGKRAEPRVAFVSLIDTGLMV 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG  L +A+   +A V ADGT+  G   GSIH++GA+V G + CNGW FW++E+ G L  
Sbjct: 301 PGATLYDAKKRWAAKVRADGTVAIGDSAGSIHKIGAEVQGLDACNGWTFWHYERSGGLTP 360

Query: 361 INTLRILVRKELY 373
           I+ LR + R  + 
Sbjct: 361 IDELRRIARLGME 373


>gi|222085157|ref|YP_002543687.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium radiobacter K84]
 gi|221722605|gb|ACM25761.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium radiobacter K84]
          Length = 376

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 254/372 (68%), Positives = 307/372 (82%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M+    LA      +   W D IIKG+ ++ LE LP  SVD+IFADPPYNLQL G L+RP
Sbjct: 1   MASVFPLADLRTSATPGSWVDTIIKGDCVAALEALPTHSVDVIFADPPYNLQLGGTLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GT+WVIGSYHNIFR+G  +Q+
Sbjct: 61  DQSLVDAVDDEWDQFASFEAYDAFTRAWLLACRRVLKPTGTIWVIGSYHNIFRVGATMQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           LNFWILNDIVWRK+NPMPNF+GRRFQNAHET+IWASP+ K KGYTFNYDA+KAAN+DVQM
Sbjct: 121 LNFWILNDIVWRKTNPMPNFKGRRFQNAHETMIWASPNAKTKGYTFNYDAMKAANDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PIC+G ERL+  DG+K+HPTQKPEALL+R++++S+KPGDIILDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICNGGERLKGDDGKKVHPTQKPEALLARVIMASSKPGDIILDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +QDYID A+ RIASV+PLG  ELTV+TGK+ E RVAFN+LVE GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAASARIASVEPLGKAELTVMTGKKAEARVAFNVLVESGLIK 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PGQ+LT+A+   SA V ADGT+ +G E GSIHR+GAKV G + CNGW FW+F+    L  
Sbjct: 301 PGQVLTDARRRHSAIVRADGTVAAGGEAGSIHRLGAKVQGLDACNGWTFWHFDDGQSLRP 360

Query: 361 INTLRILVRKEL 372
           I+ LR ++R ++
Sbjct: 361 IDELRAIIRNDM 372


>gi|84515025|ref|ZP_01002388.1| modification methylase [Loktanella vestfoldensis SKA53]
 gi|84511184|gb|EAQ07638.1| modification methylase [Loktanella vestfoldensis SKA53]
          Length = 385

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 212/354 (59%), Positives = 268/354 (75%), Gaps = 1/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II G+ I+V+  LPA SVDLIFADPPYNLQL G L+RP++S VDAV D+WD+F SF 
Sbjct: 31  LNTIIDGDCIAVMNSLPAGSVDLIFADPPYNLQLKGDLHRPNNSKVDAVDDAWDQFDSFA 90

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FT+AWL A RR+LKPNG +WVIGSYHN+FR+G  LQN  FWILND+VWRKSNPMPN
Sbjct: 91  AYDRFTKAWLAAARRLLKPNGAIWVIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPN 150

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R  NAHETLIWAS    +  YTFNY+ALK+ NE VQMRSDW++PIC+G ERL++  
Sbjct: 151 FRGKRLTNAHETLIWASKEEAS-KYTFNYEALKSLNEGVQMRSDWVLPICTGHERLKDDQ 209

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKP++LL R++V +T PGD+ILDPFFG+GT+GAVAK L R FIGIE +  Y  
Sbjct: 210 GDKAHPTQKPQSLLHRVIVGTTNPGDVILDPFFGTGTTGAVAKMLGRDFIGIEREAAYRK 269

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRIA+ +      L V + KR+EPRVAF +LVERG+++PG+ L +  G   A V AD
Sbjct: 270 VAEKRIANTRKFDTEALEVSSSKRSEPRVAFGVLVERGMLRPGEELWSMNGRHKAKVRAD 329

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GTLI     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+ 
Sbjct: 330 GTLIGDDIKGSIHQVGAHLEGAPSCNGWTYWQFKRDGQKVPIDLLRQQIRSEME 383


>gi|256060624|ref|ZP_05450790.1| modification methylase BabI [Brucella neotomae 5K33]
 gi|261324621|ref|ZP_05963818.1| modification methylase BabI [Brucella neotomae 5K33]
 gi|261300601|gb|EEY04098.1| modification methylase BabI [Brucella neotomae 5K33]
          Length = 377

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGIVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 372


>gi|319784679|ref|YP_004144155.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170567|gb|ADV14105.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 377

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 238/373 (63%), Positives = 296/373 (79%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS    L    +     EW D I+KG+ ++ L++LP KS+D+IFADPPYNLQL+G L+RP
Sbjct: 1   MSAVRLLDELSHAPQQSEWLDTILKGDCVAALDRLPEKSIDVIFADPPYNLQLDGDLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D S VDAV D WD+F SFEAYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G  +Q+
Sbjct: 61  DQSKVDAVDDDWDQFESFEAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAKMQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L FWILND+VWRK+NPMPNFRGRRFQNAHET+IWA+   K KGYTFNY+A+KA+N+D+QM
Sbjct: 121 LGFWILNDVVWRKTNPMPNFRGRRFQNAHETMIWATRDQKGKGYTFNYEAMKASNDDIQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PIC+G ERL+N +G+KLHPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICTGGERLKNDNGDKLHPTQKPEALLARIMMASTKPGDIVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +Q YID A +RI +V+PL   +LTVLTGKR EPRVAF  L++ GL+ 
Sbjct: 241 AKRLGRHFVGIEREQAYIDAANERIDAVRPLDGADLTVLTGKRAEPRVAFVSLIDTGLMM 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG  L +A+   +A V ADGT+  G   GSIH+VGA+V G + CNGW FW++E+ G L  
Sbjct: 301 PGATLYDAKKRWAAKVRADGTVAIGDSAGSIHKVGAEVQGLDACNGWTFWHYERSGGLTP 360

Query: 361 INTLRILVRKELY 373
           I+ LR + R  + 
Sbjct: 361 IDELRRIARLGME 373


>gi|114764187|ref|ZP_01443425.1| modification methylase [Pelagibaca bermudensis HTCC2601]
 gi|114543339|gb|EAU46355.1| modification methylase [Roseovarius sp. HTCC2601]
          Length = 367

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 210/352 (59%), Positives = 268/352 (76%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I ++  LPA+SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F+SFE 
Sbjct: 13  NTILAGDCIEMMNSLPAESVDLIFADPPYNLQLRGDLHRPDNSRVDAVDDHWDQFASFEV 72

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A +R+LKPNG +WVIGSYHNIFR+G  LQ+  +WILND++WRKSNPMPNF
Sbjct: 73  YDRFTREWLAAAKRLLKPNGAIWVIGSYHNIFRVGAALQDAGYWILNDVIWRKSNPMPNF 132

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWAS    A  YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +G
Sbjct: 133 RGKRFTNAHETMIWASKGEGA-KYTFNYEALKALNEGIQMRSDWVLPICNGGERLKDANG 191

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKP +LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y ++
Sbjct: 192 DKAHPTQKPASLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYREV 251

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RIA V+      L V   KR EPRV F  LVERGL++PG++L +A G   A V ADG
Sbjct: 252 AERRIADVRAYDRSSLEVTRAKRAEPRVPFGQLVERGLLRPGEMLVSANGK-VAKVRADG 310

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TL+     GSIH+VGA + G+ +CNGW +W+F K G++  I+ LR  +R E+
Sbjct: 311 TLVGDDVKGSIHQVGAHLEGAPSCNGWTYWHFRKDGKVVPIDVLRQQIRAEM 362


>gi|218682477|ref|ZP_03530078.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CIAT 894]
          Length = 380

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 251/354 (70%), Positives = 302/354 (85%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+S 
Sbjct: 23  WVDTIIKGDCVSALEALPNHSVDVIFADPPYNLQLGGSLHRPDQSLVDAVDDEWDQFASL 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+ GQ+LT+ +   SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKAGQVLTDVRRRYSAIVRA 322

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376


>gi|110677702|ref|YP_680709.1| modification methylase [Roseobacter denitrificans OCh 114]
 gi|109453818|gb|ABG30023.1| modification methylase [Roseobacter denitrificans OCh 114]
          Length = 364

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 213/353 (60%), Positives = 267/353 (75%), Gaps = 2/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF+
Sbjct: 12  LNTIIDGDCIEVMNGLPEASVDLIFADPPYNLQLKGDLHRPDNSRVDAVDDEWDQFSSFK 71

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FT+AWL A RR+LKP+G +WVIGSYHNIFR+G  LQN  +WILND+VWRKSNPMPN
Sbjct: 72  AYDNFTKAWLKAARRILKPDGAIWVIGSYHNIFRVGAELQNQGYWILNDVVWRKSNPMPN 131

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHET+IWA    ++  YTFNY+ALKA NE +QMRSDW++PIC+G ERL++++
Sbjct: 132 FRGKRFTNAHETMIWAGR-DESSKYTFNYEALKALNEGIQMRSDWVLPICTGHERLKDEN 190

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL R+LV +T PGD+ILDPFFG+GT+GAVAK L R FIGIE +  Y  
Sbjct: 191 GDKAHPTQKPESLLHRVLVGATNPGDVILDPFFGTGTTGAVAKMLGRDFIGIEREAAYRK 250

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRIA V+      L V   KR EPRV F  LVERG+++PG+ L + +G   A V AD
Sbjct: 251 VAEKRIAKVRKFDREALQVSVSKRAEPRVPFGQLVERGMLRPGEALYSPRGQ-VAKVRAD 309

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GTLI     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+
Sbjct: 310 GTLIGNDVKGSIHQVGAHLEGAPSCNGWTYWTFKQDGKKIPIDVLRQQIRSEM 362


>gi|254436719|ref|ZP_05050213.1| DNA methylase domain protein [Octadecabacter antarcticus 307]
 gi|198252165|gb|EDY76479.1| DNA methylase domain protein [Octadecabacter antarcticus 307]
          Length = 373

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 204/353 (57%), Positives = 262/353 (74%), Gaps = 1/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+F+SF+
Sbjct: 19  LNTILDGDCIEVMNSLPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDNDWDQFASFK 78

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FT AWL A RR+LK +G +WVIGSYHN+FR+GT LQN  FWILND+VWRKSNPMPN
Sbjct: 79  VYDDFTHAWLKAARRILKKDGAIWVIGSYHNVFRMGTELQNQGFWILNDVVWRKSNPMPN 138

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R  NAHETLIWAS S  +K  TFNY+ALKA NE +QMRSDW++PIC+G ERL+N  
Sbjct: 139 FRGKRLTNAHETLIWASKSETSKP-TFNYEALKALNEGIQMRSDWVLPICTGHERLKNDQ 197

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R +IGIE + +Y  
Sbjct: 198 GDKAHPTQKPESLLHRVLLGTTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAEYRA 257

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A +R+A ++   +  L V   KR EPRV F  +VERG+++PG+ L +  G   A V AD
Sbjct: 258 VAARRLAKIRKFDSEALEVTQSKRAEPRVPFGQVVERGMLRPGEELWSMNGRHKAKVRAD 317

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GTLI     GSIH+VGA    + +CNGW +W+F + G+   I+ LR  +R E+
Sbjct: 318 GTLIGADAKGSIHQVGAACENAPSCNGWTYWHFRRDGKKVPIDLLRQQIRSEM 370


>gi|254417828|ref|ZP_05031552.1| DNA methylase domain protein [Brevundimonas sp. BAL3]
 gi|196184005|gb|EDX78981.1| DNA methylase domain protein [Brevundimonas sp. BAL3]
          Length = 369

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/354 (59%), Positives = 263/354 (74%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD I +G+ I+VL+ LP  SVD++FADPPYNLQL G L RPD+S VDAV D WDKF SF 
Sbjct: 16  KDVIHRGDCIAVLKSLPDASVDMVFADPPYNLQLGGDLLRPDNSKVDAVDDDWDKFDSFA 75

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTRAWL  CRRVLKP G++WVIGSYHN+FR+G  +Q+L FW+LNDI+WRKSNPMPN
Sbjct: 76  EYDTFTRAWLTECRRVLKPEGSIWVIGSYHNVFRLGAAIQDLGFWVLNDIIWRKSNPMPN 135

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIWA+ S + K YTFNYDALKA NED QMRSDW   +C+G ER+++ D
Sbjct: 136 FKGTRFTNAHETLIWAARSREQKRYTFNYDALKAFNEDTQMRSDWTFALCTGEERIKDAD 195

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPEALL R+L+S+T+PGD++LDPFFG+GT+GA AK+L R +IGIE  + Y +
Sbjct: 196 GKKAHPTQKPEALLHRVLLSATRPGDVVLDPFFGTGTTGAAAKRLGRHYIGIERDETYAE 255

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A  RIASV P    +L V+  KR EP+V F  LVE GL+ PG  L   +G   A V AD
Sbjct: 256 VAETRIASVIPANPEDLMVMGSKRAEPKVPFGALVEAGLLHPGDRLYCPKGEREARVRAD 315

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           G+L+SG+  GSIH++GA    +  CNGW +W F+    L SI+ LR  VR  + 
Sbjct: 316 GSLVSGSLTGSIHKLGALFENAPACNGWTYWRFKTDQGLKSIDALRAEVRAGMQ 369


>gi|225852027|ref|YP_002732260.1| modification methylase HinfI [Brucella melitensis ATCC 23457]
 gi|256044204|ref|ZP_05447111.1| adenine-specific methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113019|ref|ZP_05453916.1| adenine-specific methyltransferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264469|ref|ZP_05467001.1| modification methylase BabI [Brucella melitensis bv. 2 str. 63/9]
 gi|260563563|ref|ZP_05834049.1| modification methylase BabI [Brucella melitensis bv. 1 str. 16M]
 gi|265990620|ref|ZP_06103177.1| modification methylase BabI [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994452|ref|ZP_06107009.1| modification methylase BabI [Brucella melitensis bv. 3 str. Ether]
 gi|225640392|gb|ACO00306.1| Modification methylase HinfI [Brucella melitensis ATCC 23457]
 gi|260153579|gb|EEW88671.1| modification methylase BabI [Brucella melitensis bv. 1 str. 16M]
 gi|262765565|gb|EEZ11354.1| modification methylase BabI [Brucella melitensis bv. 3 str. Ether]
 gi|263001404|gb|EEZ13979.1| modification methylase BabI [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094800|gb|EEZ18538.1| modification methylase BabI [Brucella melitensis bv. 2 str. 63/9]
          Length = 377

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 242/354 (68%), Positives = 298/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+L   SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVSALERLSDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 372


>gi|254450082|ref|ZP_05063519.1| modification methylase [Octadecabacter antarcticus 238]
 gi|198264488|gb|EDY88758.1| modification methylase [Octadecabacter antarcticus 238]
          Length = 373

 Score =  441 bits (1134), Expect = e-122,   Method: Composition-based stats.
 Identities = 207/353 (58%), Positives = 263/353 (74%), Gaps = 1/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+F SF+
Sbjct: 19  LNSIIDGDCIEVMNSLPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDNDWDQFESFK 78

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FT AWL A RR+LKP+G +WVIGSYHN+FR+GT LQN  FWILND+VWRKSNPMPN
Sbjct: 79  VYDDFTHAWLKAARRILKPDGAIWVIGSYHNVFRMGTELQNQGFWILNDVVWRKSNPMPN 138

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R  NAHETLIWAS + K+K  TFNY+ALKA NE +QMRSDW++PIC+G ERL+N  
Sbjct: 139 FRGKRLTNAHETLIWASKAEKSKP-TFNYEALKALNEGIQMRSDWVLPICTGHERLKNDQ 197

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R +IGIE + +Y  
Sbjct: 198 GDKAHPTQKPESLLHRVLLGTTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAEYRA 257

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KR+A ++   +  L V   KR EPRV F  +VERG+++PG+ L +  G   A V AD
Sbjct: 258 VAEKRLAKIRKFDSEALEVTQSKRAEPRVPFGQVVERGMLRPGEELWSMNGRHKAKVRAD 317

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GTLI     GSIH+VGA    + +CNGW +W+F + G+   I+ LR  +R E+
Sbjct: 318 GTLIGADAKGSIHQVGAACEKAPSCNGWTYWHFRRDGKTVPIDLLRQQIRSEM 370


>gi|84687972|ref|ZP_01015836.1| modification methylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664004|gb|EAQ10504.1| modification methylase [Rhodobacterales bacterium HTCC2654]
          Length = 364

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 218/353 (61%), Positives = 270/353 (76%), Gaps = 2/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F+SF+
Sbjct: 13  LNQILPGDCIEVMNSLPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDEWDQFASFK 72

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTR WL A RR+LKPNG +WVIGSYHN+FR+G  LQN  FWILND+VWRKSNPMPN
Sbjct: 73  VYDDFTREWLAAARRLLKPNGAIWVIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPN 132

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+R  NAHETLIWA  S  +K  TFNY+ALK+ NE VQMRSDW+IPIC+G ERL++ +
Sbjct: 133 FRGKRLTNAHETLIWAQKSEDSKA-TFNYEALKSLNEGVQMRSDWVIPICNGGERLKDDN 191

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           GEK HPTQKPEALL R+LV +T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  
Sbjct: 192 GEKAHPTQKPEALLHRVLVGTTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRK 251

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRI+ ++      LTV T KR EPRVAF  LVERG+++PG+ L   +G I A V AD
Sbjct: 252 VAEKRISKIRKFDKEALTVSTSKRAEPRVAFGQLVERGMLRPGETLIGPRGQI-AKVRAD 310

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GTLISG   GSIH+VGA +  + +CNGW +W F++ G+  SI+ LR  +R E+
Sbjct: 311 GTLISGEARGSIHQVGAALESAPSCNGWTYWAFKRDGKTVSIDVLRQQIRAEM 363


>gi|126728137|ref|ZP_01743953.1| modification methylase [Sagittula stellata E-37]
 gi|126711102|gb|EBA10152.1| modification methylase [Sagittula stellata E-37]
          Length = 365

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 208/352 (59%), Positives = 272/352 (77%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I V+  LP  SVDLIFADPPYNLQL G+L+RPD+S VDAV D WD+FS+F A
Sbjct: 16  NQILDGDCIQVMNSLPEASVDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFSNFAA 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFT+ WL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  FWILND++WRK+NPMPNF
Sbjct: 76  YDAFTQDWLRAARRLLKPDGAIWVIGSYHNIFRVGAALQDAGFWILNDVIWRKANPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWAS S  A  YTFNY+ALK+ NE +QMRSDW++PIC+G ERL++ +G
Sbjct: 136 RGKRFTNAHETMIWASKSEGA-KYTFNYEALKSLNEGIQMRSDWVLPICNGGERLKDANG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKP++LL R++V ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y ++
Sbjct: 195 DKAHPTQKPQSLLHRVIVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYREV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KR+  V+      L V T KR EPRV F  LVERG+++PG++L N +G + A V ADG
Sbjct: 255 ALKRLGDVRAFDKGALEVSTSKRAEPRVPFGQLVERGMLRPGEMLINGRGQM-AKVRADG 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TL+     GSIH+VGAK+ G+ +CNGW +W+F + G+   I+ LR  +R E+
Sbjct: 314 TLVGDGVTGSIHQVGAKLEGAPSCNGWTYWHFRRDGKTVPIDVLRQQIRSEM 365


>gi|118590772|ref|ZP_01548173.1| adenine dna methyltransferase protein [Stappia aggregata IAM 12614]
 gi|118436748|gb|EAV43388.1| adenine dna methyltransferase protein [Stappia aggregata IAM 12614]
          Length = 379

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 219/355 (61%), Positives = 274/355 (77%), Gaps = 1/355 (0%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W + I+KG+ ++ LEKLP++SVDL+FADPPYNLQL G L+RPD S VDA  D WD+F SF
Sbjct: 25  WLNTILKGDCVAALEKLPSRSVDLVFADPPYNLQLGGDLHRPDQSKVDACDDHWDQFESF 84

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLA RRV+K +G+L+VIGSYHNIFR+G +LQ+L FWI+NDIVW KSNPMP
Sbjct: 85  EAYDAFTRAWLLAVRRVMKADGSLYVIGSYHNIFRVGAILQDLGFWIMNDIVWLKSNPMP 144

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG+RF NAHET+IWA  S  AK  TFNYDALK  NED+QMRSDW +P+C+G+ERL+ K
Sbjct: 145 NFRGKRFTNAHETMIWAVKSKDAKP-TFNYDALKTFNEDLQMRSDWHLPLCTGAERLKGK 203

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL R+L +S+KPGD++LDPFFG+GT+GAVAKKL R ++G+E +QDYI
Sbjct: 204 DGQKVHPTQKPEALLYRVLTASSKPGDVVLDPFFGTGTTGAVAKKLGRHYVGVEREQDYI 263

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +++P     L +  GKR   R+ F  L+E GL+QPG  L+  +G   A V A
Sbjct: 264 DAATARIEAIEPGDAASLEMQQGKRALKRIPFGTLLESGLLQPGTELSCPKGKHLAIVRA 323

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DG+L SG   GSIH+VGA V G E CNGW FW+  + G+   I+ LR  +R  L 
Sbjct: 324 DGSLKSGDHTGSIHKVGALVQGQEACNGWTFWHINEGGKTSPIDDLRKEIRSRLQ 378


>gi|254471927|ref|ZP_05085328.1| modification methylase SmeIP [Pseudovibrio sp. JE062]
 gi|211959129|gb|EEA94328.1| modification methylase SmeIP [Pseudovibrio sp. JE062]
          Length = 365

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 215/355 (60%), Positives = 273/355 (76%), Gaps = 1/355 (0%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           EW D IIKG+ +  L KLP  SVD++FADPPYNLQL G L+RPDHS VDA  D WD+FSS
Sbjct: 10  EWLDTIIKGDCVEALNKLPDNSVDVVFADPPYNLQLGGDLHRPDHSKVDACDDHWDQFSS 69

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F+AYD FTRAWL A RRVLKPNG++WVIGSYHNIFR+G ++Q+L FWI ND+VW K+NPM
Sbjct: 70  FKAYDEFTRAWLTAVRRVLKPNGSIWVIGSYHNIFRVGAVMQDLGFWINNDVVWLKTNPM 129

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRG+RF NAHETLIWA PS ++K  TFNYDA+K  N+D+QMRSDW++PIC+G ERL++
Sbjct: 130 PNFRGKRFTNAHETLIWACPSQESKP-TFNYDAMKTFNDDLQMRSDWVLPICTGHERLKD 188

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            +G+K+HPTQKPE+LL R+L+S++  GD+ILDPFFG+GT+GAVAKKL R F+G E +  Y
Sbjct: 189 DNGDKVHPTQKPESLLYRVLLSTSNQGDVILDPFFGTGTTGAVAKKLGRHFVGCEREDAY 248

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           I  A++RI  V P  +  L +  GKR  PRV F  L+E GL+ PG  LT+A+G   ATV 
Sbjct: 249 IKAASERIDRVTPANDDFLAMTQGKRALPRVPFGNLLETGLLTPGAELTDARGRFKATVR 308

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ADG+LI G   GSIH+VGA V G + CNGW FW+ ++   L  ++ LR +VR ++
Sbjct: 309 ADGSLICGEHSGSIHKVGALVQGQQACNGWTFWHVKRGKALEPVDALRQVVRSQM 363


>gi|326408521|gb|ADZ65586.1| modification methylase HinfI [Brucella melitensis M28]
 gi|326538238|gb|ADZ86453.1| modification methylase HinfI [Brucella melitensis M5-90]
          Length = 368

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 242/354 (68%), Positives = 298/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+L   SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 10  WLDSIIKGDCVSALERLSDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 69

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 70  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 129

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 130 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 189

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 190 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 249

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 250 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 309

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 310 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 363


>gi|328544989|ref|YP_004305098.1| adenine dna methyltransferase protein [polymorphum gilvum
           SL003B-26A1]
 gi|326414731|gb|ADZ71794.1| Adenine dna methyltransferase protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 379

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 221/354 (62%), Positives = 280/354 (79%), Gaps = 1/354 (0%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W + I+KG+ ++ LEKLP++SVDL+FADPPYNLQL G L+RPD S VDA  D+WD+F SF
Sbjct: 25  WLNTILKGDCVAALEKLPSRSVDLVFADPPYNLQLGGDLHRPDQSRVDACDDAWDQFDSF 84

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLA RRVLK +G++WVIGSYHNIFR+G +LQ+L FWILND+VW KSNPMP
Sbjct: 85  EAYDAFTRAWLLAVRRVLKKDGSIWVIGSYHNIFRVGAILQDLGFWILNDVVWVKSNPMP 144

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG+R  NAHET+IWA+PS  A  YTFNYDALKA N+D+QMRSDW +P+C+G+ERL++ 
Sbjct: 145 NFRGKRLTNAHETMIWAAPSKDA-RYTFNYDALKAFNDDLQMRSDWHLPLCTGAERLKDG 203

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G+K+HPTQKPEALL R+L +S+KP DI+LDPFFG+GT+GAVA+KL R+F+G+E +Q YI
Sbjct: 204 GGQKVHPTQKPEALLYRVLTASSKPDDIVLDPFFGTGTTGAVARKLGRNFVGVEREQAYI 263

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RIA+V+P     L +  GKR EPR+ F  L+E GL+QPG  LT ++G   A V A
Sbjct: 264 DAATARIAAVEPASGACLDMQKGKRAEPRIPFGSLLEAGLLQPGATLTCSKGRHKAIVRA 323

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DG+L S    GSIH+VGA V G++ CNGW FW+ E+ G    I+ LR ++R  L
Sbjct: 324 DGSLASADHTGSIHKVGALVQGADACNGWTFWHIEEDGTRAPIDALRQIIRSRL 377


>gi|260425326|ref|ZP_05779306.1| modification methylase CcrMI [Citreicella sp. SE45]
 gi|260423266|gb|EEX16516.1| modification methylase CcrMI [Citreicella sp. SE45]
          Length = 370

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 209/353 (59%), Positives = 267/353 (75%), Gaps = 2/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I ++  LP +SVDLIFADPPYNLQL G+L+RPD+S VDAV D WD+F+SF 
Sbjct: 15  LNTILDGDCIEMMNSLPEESVDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFASFA 74

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTR WL A RRVLKPNG +WVIGSYHNIFR+G  LQ+  +WILND+VWRKSNPMPN
Sbjct: 75  AYDQFTREWLAAARRVLKPNGAIWVIGSYHNIFRVGAALQDAGYWILNDVVWRKSNPMPN 134

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHET+IWAS    A  YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +
Sbjct: 135 FRGKRFTNAHETMIWASK-SDAAKYTFNYEALKALNEGIQMRSDWVLPICNGGERLKDAN 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKP +LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y +
Sbjct: 194 GDKAHPTQKPMSLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYRE 253

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +AT+RIA ++      L V   KR EPR+ F  LVERG+++PG++L +  G   A V AD
Sbjct: 254 VATRRIADIRAFDRSALEVTRAKRAEPRIPFGQLVERGMLRPGEMLVSPSGK-VAKVRAD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GTL+     GSIH+VGA + G+ +CNGW +W+F K G+   I+ LR  +R E+
Sbjct: 313 GTLVGDDVKGSIHQVGAHLEGAPSCNGWTYWHFRKDGKHVPIDVLRQQIRAEM 365


>gi|163796460|ref|ZP_02190420.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
 gi|159178310|gb|EDP62854.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
          Length = 370

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 204/349 (58%), Positives = 265/349 (75%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ I  L  LP +SVDLIFADPPYNLQL G+L RP+++ VD V D+WD+F  FEAY
Sbjct: 11  RILTGDCIEELRSLPDRSVDLIFADPPYNLQLGGELLRPNNTRVDGVDDAWDRFGGFEAY 70

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F RAWL  CRRVLK  GTLWVIGSYHNIFR+G ++Q+L FW+LND++WRK+NPMPNFR
Sbjct: 71  DKFCRAWLGECRRVLKDTGTLWVIGSYHNIFRVGAIVQDLGFWMLNDVIWRKANPMPNFR 130

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G+RF NAHETLIWA+ S  ++ YTFNYDA+KA N+D QMRSDW +P+C+G+ERL+ +DG 
Sbjct: 131 GKRFTNAHETLIWAARSEDSRRYTFNYDAMKALNDDQQMRSDWFLPLCTGAERLKAEDGS 190

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPE+LL+R+L+++++PGDI+LDPFFG+GT+GAVAK+L R +IGIE    Y  IA
Sbjct: 191 KAHPTQKPESLLARVLLAASRPGDIVLDPFFGTGTTGAVAKRLGRRWIGIERDPGYAAIA 250

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
           +KRIA V+ + +     L  +R +PRV F  LVE GLI+PG++L +++    A V ADG 
Sbjct: 251 SKRIAEVEAVDDPMALALANRREQPRVPFGRLVEEGLIRPGEVLFDSRRRWFAKVRADGH 310

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
           LIS +  GSIH VGA V G+  CNGW FW+ E+ G    I+  R  +R 
Sbjct: 311 LISESHKGSIHSVGAAVQGAPACNGWTFWHAERKGMPLPIDVFRQQIRA 359


>gi|304393522|ref|ZP_07375450.1| modification methylase BabI [Ahrensia sp. R2A130]
 gi|303294529|gb|EFL88901.1| modification methylase BabI [Ahrensia sp. R2A130]
          Length = 416

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 225/353 (63%), Positives = 280/353 (79%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D II+G+ ++ + +LPA SVD+IFADPPYNLQL G+L RPD S VDA  D WD+F +F 
Sbjct: 60  LDSIIQGDCVAAMSRLPANSVDVIFADPPYNLQLGGELSRPDQSTVDACDDHWDQFDTFA 119

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYDAF+RAWL A RRVLKPNGT+WVIGSYHNIFR+GTMLQ++ FWILNDIVWRK+NPMPN
Sbjct: 120 AYDAFSRAWLTAARRVLKPNGTIWVIGSYHNIFRVGTMLQDMQFWILNDIVWRKTNPMPN 179

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHET+IWASP PK KGYTFNYDALK AN+DVQMRSDW+ PIC+G ERL+ +D
Sbjct: 180 FRGRRFTNAHETMIWASPDPKGKGYTFNYDALKMANDDVQMRSDWVFPICTGGERLKGED 239

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K+HPTQKPEALL R+L+SSTKPGD++LDPFFG+GT+GAVAK+L R FIGIE + DYI+
Sbjct: 240 GKKVHPTQKPEALLHRVLMSSTKPGDVVLDPFFGTGTTGAVAKRLGRHFIGIERETDYIE 299

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI +++P    +LTV TGKR  PRV F  ++E GL+  G +LT+++    A + AD
Sbjct: 300 AARARIDAIEPGQAAQLTVTTGKRALPRVPFGAIIENGLLSAGDVLTDSKRRWKAMIRAD 359

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           G+LI   E  SIH+ GA+V G + CNGW FW+ E+ G+L  I+ LR + R  +
Sbjct: 360 GSLIESGEAASIHKTGARVQGLDACNGWTFWHVEREGKLVCIDDLRAIYRDAM 412


>gi|13476248|ref|NP_107818.1| adenine DNA methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14027009|dbj|BAB53963.1| adenine DNA methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 377

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 238/373 (63%), Positives = 296/373 (79%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS    L    +     EW D I+KG+ ++ L++LP KSVD+IFADPPYNLQL+G L+RP
Sbjct: 1   MSAVRLLHELSHAPQQSEWLDTILKGDCVAALDRLPEKSVDVIFADPPYNLQLDGDLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D S VDAV D WD+F +FEAYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G  +Q+
Sbjct: 61  DQSKVDAVDDHWDQFENFEAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAKMQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L FWILND+VWRK+NPMPNFRGRRFQNAHET+IWAS   K KGYTFNY+ALKA+N+D+QM
Sbjct: 121 LGFWILNDVVWRKTNPMPNFRGRRFQNAHETMIWASRDQKGKGYTFNYEALKASNDDIQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PIC+G ERL+N +G+KLHPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICTGGERLKNDNGDKLHPTQKPEALLARIMMASTKPGDIVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +Q YID A +RI +V+PL + +LTVLTGKR EPRVAF  L++ GL+ 
Sbjct: 241 AKRLGRHFVGIEREQAYIDAANERIDAVRPLEDADLTVLTGKRAEPRVAFVSLIDTGLMT 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG  L +A+   +  V ADGT+  G   GSIH++GA+V G + CNGW FW++E+ G L  
Sbjct: 301 PGVTLYDAKKRWAVKVRADGTVAIGDSAGSIHKIGAEVQGLDACNGWTFWHYERSGGLTP 360

Query: 361 INTLRILVRKELY 373
           I+ LR + R  + 
Sbjct: 361 IDELRRIARLGME 373


>gi|295687797|ref|YP_003591490.1| DNA methylase N-4/N-6 domain-containing protein [Caulobacter segnis
           ATCC 21756]
 gi|295429700|gb|ADG08872.1| DNA methylase N-4/N-6 domain protein [Caulobacter segnis ATCC
           21756]
          Length = 358

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 258/352 (73%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7   TIILGDCIEQMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILNDIVWRKSNPMPNF+
Sbjct: 67  DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNFK 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW IP+C+G ER++  DG+
Sbjct: 127 GTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADGQ 186

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + +Y+  A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYLGHA 246

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            +RIA V P+   +L V+  KR EPRV F  +VE GL+ PG  L  A+G   A V  DG+
Sbjct: 247 KERIAKVVPINPHDLEVMGSKRAEPRVPFGTIVEAGLLSPGDTLYCAKGERVAKVRPDGS 306

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           +  G   GSIH++GA V  +  CNGW +W+F+    L  I+ LR  VR  + 
Sbjct: 307 ITVGDLSGSIHKIGALVQSAPACNGWTYWHFKTDAGLAPIDVLRAQVRAGMN 358


>gi|87199857|ref|YP_497114.1| DNA methylase N-4/N-6 [Novosphingobium aromaticivorans DSM 12444]
 gi|87135538|gb|ABD26280.1| DNA methylase N-4/N-6 [Novosphingobium aromaticivorans DSM 12444]
          Length = 380

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 208/348 (59%), Positives = 269/348 (77%), Gaps = 2/348 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I++G+ I+ + KLP  S+D+IFADPPYNLQL G L RPD S VDAVT+ WDKFSSF A
Sbjct: 29  NQILRGDCIAEMRKLPDASIDMIFADPPYNLQLGGDLARPDGSHVDAVTNDWDKFSSFAA 88

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL+  RR+LKP+G++WVIGSYHNIFR+G +LQ+L FWILNDI+WRK+NPMPNF
Sbjct: 89  YDKFTREWLVEARRLLKPDGSIWVIGSYHNIFRVGALLQDLGFWILNDIIWRKANPMPNF 148

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS S K+  YTFNY A+K  N+++QMRSDW++PICSG ERLR ++G
Sbjct: 149 KGTRFTNAHETLIWASKSEKS-KYTFNYRAMKTLNDELQMRSDWVLPICSGPERLR-RNG 206

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL R+++++T  GD++LDPFFG+GT+GAVAK+L R++IG E + DYI++
Sbjct: 207 TKAHPTQKPEALLYRVMLATTNKGDVVLDPFFGTGTTGAVAKRLGRNWIGCEREDDYIEV 266

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI    PL    LT +  KR+ P+VAF  LVE G + PG  LT  +G  +A V ADG
Sbjct: 267 ANERIELALPLDESALTTMQSKRSAPKVAFGALVESGYLAPGTRLTAKKGRFNAVVRADG 326

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           +L S  E+GSIH +GAK+ G+ +CNGW FW+ E  GE+  I+ LR L 
Sbjct: 327 SLQSEAEIGSIHGLGAKLQGAPSCNGWTFWHVEHEGEVKPIDALRQLY 374


>gi|393012|gb|AAA18913.1| adenine methyltransferase [Caulobacter crescentus CB15]
          Length = 358

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 212/352 (60%), Positives = 257/352 (73%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7   TIIHGDCIEQMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILNDIVWRKSNPMPNF+
Sbjct: 67  DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNFK 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW IP+C+G ER++  DG+
Sbjct: 127 GTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADGQ 186

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + + ++ A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEDLEHA 246

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RIA V P+   +L V+  KR EPRV F  +VE GL+ PG  L  ++G   A V  DG+
Sbjct: 247 KARIAKVVPIAPEDLDVMGSKRAEPRVPFGTIVEAGLLSPGDTLYCSKGTHVAKVRPDGS 306

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           +  G   GSIH++GA V  +  CNGW +W+F+    L  I+ LR  VR  + 
Sbjct: 307 ITVGDLSGSIHKIGALVQSAPACNGWTYWHFKTDAGLAPIDVLRAQVRAGMN 358


>gi|315122079|ref|YP_004062568.1| putative modification methylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495481|gb|ADR52080.1| putative modification methylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 380

 Score =  438 bits (1126), Expect = e-121,   Method: Composition-based stats.
 Identities = 324/373 (86%), Positives = 351/373 (94%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M++K+ L I++N+NSI  WKDKIIKGNSISVLEKLPAKSVDL+FADPPYNLQLNG+L+RP
Sbjct: 1   MNKKSRLVIDQNKNSILSWKDKIIKGNSISVLEKLPAKSVDLVFADPPYNLQLNGKLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D+SLV+AVTDSWDKFSSFEAYDAFTRAWLLAC+RVLKP+GTLWVIGSYHNIFRIG MLQN
Sbjct: 61  DNSLVNAVTDSWDKFSSFEAYDAFTRAWLLACQRVLKPSGTLWVIGSYHNIFRIGAMLQN 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK+KGYTFNYDALKAANEDVQM
Sbjct: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKSKGYTFNYDALKAANEDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSG+ERLRNKDGEKLH TQKPE+LLSRIL SSTKPGD +LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGAERLRNKDGEKLHATQKPESLLSRILTSSTKPGDFVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AKKL RSF+GIEM+QDYIDIATKRI SV+PLGNIELTVLTGK+ EPRVAFNLLVERG+IQ
Sbjct: 241 AKKLGRSFLGIEMEQDYIDIATKRIESVKPLGNIELTVLTGKKAEPRVAFNLLVERGIIQ 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
            GQ+LTNAQ NISA V  DGTL+SG E GSIHRVGAKVSG ETCNGWNFWYFEK G+LHS
Sbjct: 301 AGQVLTNAQRNISAIVRVDGTLVSGVESGSIHRVGAKVSGLETCNGWNFWYFEKYGKLHS 360

Query: 361 INTLRILVRKELY 373
           I+TLR LVRKELY
Sbjct: 361 IDTLRSLVRKELY 373


>gi|163760352|ref|ZP_02167434.1| modification methylase BabI [Hoeflea phototrophica DFL-43]
 gi|162282303|gb|EDQ32592.1| modification methylase BabI [Hoeflea phototrophica DFL-43]
          Length = 377

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 235/354 (66%), Positives = 291/354 (82%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ ++ LE LP  SVD+IFADPPYNLQL G L RPD S+VDAV D WD+F SF
Sbjct: 20  WLDTIIKGDCVAALEALPENSVDVIFADPPYNLQLGGDLARPDQSVVDAVNDHWDQFESF 79

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            AYDAFTRAWL+ACRRVLKPNGT+WVIGSYHNIFR+G+ LQ++ FW+LNDIVWRK+NPMP
Sbjct: 80  AAYDAFTRAWLMACRRVLKPNGTIWVIGSYHNIFRVGSQLQDIGFWLLNDIVWRKTNPMP 139

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHET+IWAS    AK YTFNY+A+KA+N+DVQMRSDWL PIC+G+ERL+  
Sbjct: 140 NFRGRRFQNAHETMIWASRDQNAKSYTFNYEAMKASNDDVQMRSDWLFPICTGAERLKGD 199

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+R+L++S+KPGD++LDPFFGSGT+GAVA++L R F+GIE +QDYI
Sbjct: 200 DGKKVHPTQKPEALLARVLMASSKPGDVVLDPFFGSGTTGAVARRLGRHFVGIEREQDYI 259

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A  RI +V+PLG  ELTV+TGKR EPRVAFN+L+E G ++PG +L +A+    A V A
Sbjct: 260 DAARARIDAVEPLGKNELTVMTGKRAEPRVAFNVLIEAGHVKPGDVLHDAKRKHQAIVRA 319

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL++  + GSIH+VGA V G + CNGW FW+ E    L  I+  R ++RKE+
Sbjct: 320 DGTLVANGQAGSIHKVGAHVQGFDACNGWTFWHLETSDGLTVIDEFRSVIRKEM 373


>gi|240850100|ref|YP_002971493.1| adenine DNA methyltransferase [Bartonella grahamii as4aup]
 gi|240267223|gb|ACS50811.1| adenine DNA methyltransferase [Bartonella grahamii as4aup]
          Length = 378

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 245/358 (68%), Positives = 299/358 (83%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           S   W++KI KG+ +SVLEKLP  SVD+IFADPPYNLQL+G LYRPDHSLVDAV D+WD+
Sbjct: 15  SQMPWRNKIFKGDCVSVLEKLPKHSVDMIFADPPYNLQLDGALYRPDHSLVDAVDDAWDQ 74

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           F SF AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FW+LNDI+WRK+
Sbjct: 75  FESFAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTALQDLGFWMLNDIIWRKN 134

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NPMPNFRGRRFQNAHETLIWA    K K YTFNYDALKAANED+QMRSDWL P+C+G+ER
Sbjct: 135 NPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDLQMRSDWLFPLCTGAER 194

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L++  G KLHPTQKP+ALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GIE +
Sbjct: 195 LKDDSGRKLHPTQKPQALLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGIERE 254

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
           QDYID A +RIA+V+PL   EL +L  K+ EPRVAFN L+E GL+ PG++L + +  +SA
Sbjct: 255 QDYIDAACERIAAVKPLAQPELAILDRKKAEPRVAFNSLLEAGLLYPGEVLYDRKKQVSA 314

Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            V ADGT++ G E GSIH +G K   S++CNGW FWY+E+ G L SI+ LR+++R ++
Sbjct: 315 IVRADGTIMHGGEAGSIHAMGRKAQDSQSCNGWTFWYYEENGRLKSIDHLRMIIRSQM 372


>gi|163867893|ref|YP_001609097.1| adenine DNA methyltransferase protein CcrM [Bartonella tribocorum
           CIP 105476]
 gi|161017544|emb|CAK01102.1| adenine DNA methyltransferase protein CcrM [Bartonella tribocorum
           CIP 105476]
          Length = 378

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 243/358 (67%), Positives = 298/358 (83%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           S   W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPDHSLVDAV D+WD+
Sbjct: 15  SQMPWRNKIFKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGALYRPDHSLVDAVDDAWDQ 74

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WRK+
Sbjct: 75  FESFAAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRKN 134

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NPMPNFRGRRFQNAHETLIWA    K K YTFNYDALKAANED+QMRSDWL P+C+G+ER
Sbjct: 135 NPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDLQMRSDWLFPLCTGAER 194

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L++  G KLHPTQKP+ALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GIE +
Sbjct: 195 LKDDSGRKLHPTQKPQALLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGIERE 254

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
           QDYID A +RIA+V+PL   EL +L  K+ EPRVAFN L+E GL+ PG++L + +  +SA
Sbjct: 255 QDYIDAACERIAAVKPLAQPELAILDRKKAEPRVAFNSLLEAGLLYPGEVLYDRKKQVSA 314

Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            V ADGT++ G E GSIH +G K   S++CNGW FWY+E+ G L SI+ LR+++R ++
Sbjct: 315 IVRADGTIMHGGEAGSIHAMGRKAQDSQSCNGWTFWYYEENGRLKSIDHLRMIIRSQM 372


>gi|114570743|ref|YP_757423.1| DNA methylase N-4/N-6 domain-containing protein [Maricaulis maris
           MCS10]
 gi|114341205|gb|ABI66485.1| DNA methylase N-4/N-6 domain protein [Maricaulis maris MCS10]
          Length = 359

 Score =  434 bits (1117), Expect = e-120,   Method: Composition-based stats.
 Identities = 197/354 (55%), Positives = 263/354 (74%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I++G  + V++ LP +SVDL+FADPPYNLQL G L+RPD+S V AV + WD+   F+ 
Sbjct: 7   DQILEGECVEVMKSLPDESVDLVFADPPYNLQLGGDLHRPDNSKVSAVDNDWDQIGGFDE 66

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT  W+   RRVLKPNG +WVIGSYHNIFR+G +LQ+  FW+LNDI+WRKSNPMPNF
Sbjct: 67  YDLFTWNWMEEARRVLKPNGAIWVIGSYHNIFRVGGILQDAGFWVLNDIIWRKSNPMPNF 126

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWA+ +  A+  TFNY A+KA N+ VQMRSDW +PIC+G ERL+++DG
Sbjct: 127 KGTRFTNAHETLIWAAKTKDARP-TFNYAAMKALNDGVQMRSDWTLPICTGGERLKDEDG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+L+S+T PGD++LDPFFG+GT+GA AK+L R +IGIE    Y+D+
Sbjct: 186 KKAHPTQKPESLLHRVLLSTTNPGDVVLDPFFGTGTTGAAAKRLGRHYIGIERDTAYLDV 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KR+A++    +  L V   KR +PR+ F  LVERG+++PG  L   +G  +A V ADG
Sbjct: 246 ARKRLAAITRGASDTLDVTQSKRAQPRIPFGALVERGMLKPGDTLYCPKGRNTARVRADG 305

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TLI+GT  GSIH+VGA++  + +CNGW +W+      L  I+ +R  +R  L N
Sbjct: 306 TLIAGTSAGSIHQVGAQLQSAPSCNGWTYWHIRTKQGLAPIDVMRAEIRATLEN 359


>gi|89052883|ref|YP_508334.1| DNA methylase N-4/N-6 [Jannaschia sp. CCS1]
 gi|88862432|gb|ABD53309.1| DNA methylase N-4/N-6 [Jannaschia sp. CCS1]
          Length = 367

 Score =  434 bits (1117), Expect = e-120,   Method: Composition-based stats.
 Identities = 209/353 (59%), Positives = 270/353 (76%), Gaps = 2/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RP++SLVDAV + WD+F SF+
Sbjct: 15  LNTILAGDCIDVMNALPEASVDLIFADPPYNLQLKGDLHRPNNSLVDAVDNDWDQFDSFK 74

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYDAFT+AWL A +R+LKP G +WVIGSYHNIFR+G  LQ   +WILND+VWRKSNPMPN
Sbjct: 75  AYDAFTKAWLAAAKRLLKPGGAIWVIGSYHNIFRVGAELQTQGYWILNDVVWRKSNPMPN 134

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHET+IWAS    A  YTFNY+ALK  NE +QMRSDW++PIC+GSERL++  
Sbjct: 135 FRGKRFTNAHETMIWASKDEGA-KYTFNYEALKELNEGIQMRSDWVLPICNGSERLKDDK 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE ++ Y  
Sbjct: 194 GDKAHPTQKPESLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKALGRDYIGIEREEAYRV 253

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KR++ V+      + V T KR EPRV F  LVERG+++PG++L + +G   A V AD
Sbjct: 254 VAEKRLSRVRKFDKTSIAVTTPKRAEPRVPFGQLVERGMLRPGEMLFSPRGQ-QAKVRAD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GTLI+    GSIH+VGA++ G+ +CNGW +W F++ G+  SI+ LR  +R E+
Sbjct: 313 GTLIADDVKGSIHKVGAELEGAPSCNGWTYWNFKRDGKNVSIDVLRQQIRAEM 365


>gi|84502791|ref|ZP_01000904.1| modification methylase [Oceanicola batsensis HTCC2597]
 gi|84388774|gb|EAQ01644.1| modification methylase [Oceanicola batsensis HTCC2597]
          Length = 363

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 211/354 (59%), Positives = 265/354 (74%), Gaps = 2/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I  +  LP  SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+F SF 
Sbjct: 12  LNTILAGDCIEQMNALPEASVDLIFADPPYNLQLKGQLHRPDNSEVDAVDDHWDQFDSFA 71

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTR WL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  +WILND+VWRKSNPMPN
Sbjct: 72  AYDRFTRDWLAAARRLLKPDGAIWVIGSYHNIFRVGAALQDAGYWILNDVVWRKSNPMPN 131

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHET+IWAS S  A  YTFNY+ALK+ NE +QMRSDW++PIC+G ERL++  
Sbjct: 132 FRGKRFTNAHETMIWASKSEGA-KYTFNYEALKSLNEGIQMRSDWVLPICNGGERLKDAK 190

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPEALL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE ++ Y  
Sbjct: 191 GDKAHPTQKPEALLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGREYIGIEREEAYRK 250

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A  RI+ V+      L V T KR EPRV F  LVERG+++PG+ L N +G  +A V AD
Sbjct: 251 VAEARISKVRKFDRDALIVSTSKRAEPRVPFGQLVERGMLRPGETLVNTRGQ-AARVRAD 309

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GTL +    GSIH+VGA + G+ +CNGW +W+F K G+   I+ +R  +R E+ 
Sbjct: 310 GTLATDGFNGSIHQVGAHIEGAPSCNGWTYWHFLKDGKTIPIDLMRQQIRAEMN 363


>gi|307941627|ref|ZP_07656982.1| modification methylase SmeI [Roseibium sp. TrichSKD4]
 gi|307775235|gb|EFO34441.1| modification methylase SmeI [Roseibium sp. TrichSKD4]
          Length = 372

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 211/365 (57%), Positives = 276/365 (75%), Gaps = 1/365 (0%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           ++  N    W + I +G+ +S LE+LP+KSVDL+FADPPYNLQL G L RPD S VDA  
Sbjct: 9   SQGSNPEPSWLNTIHRGDCVSALERLPSKSVDLVFADPPYNLQLGGDLMRPDDSKVDACD 68

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D WD+F+SFEAYDAFTRAWLLA RRV+KP+G+L+VIGSYHNIFR+G +LQ+L FWI+NDI
Sbjct: 69  DHWDQFASFEAYDAFTRAWLLAVRRVMKPDGSLYVIGSYHNIFRVGAILQDLGFWIMNDI 128

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           +W KSNPMPNFRG+RF NAHET+IWA+ S  AK  TFNYDALK  N+D+QMRSDW +P+C
Sbjct: 129 IWLKSNPMPNFRGKRFTNAHETIIWATKSKDAKP-TFNYDALKTFNDDLQMRSDWQLPLC 187

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G ERL+++ G+K+HPTQKPEALL R+L +S+ PGD++LDPFFG+GT+GAVAKKL R+++
Sbjct: 188 TGGERLKDEAGQKVHPTQKPEALLYRVLTASSTPGDVVLDPFFGTGTTGAVAKKLGRNYV 247

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
           G+E ++DYI  A  R+A++ P     L +  GKR E R+ F  L+E GL++PG  L+ A+
Sbjct: 248 GVEREEDYIRHAEARLAAITPGDAETLEMQKGKRAEKRIPFGSLLETGLMKPGTELSCAK 307

Query: 310 GNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           G   A V ADG+L  G   GSIH+VGA V G ++CNGW FW+         I++LR  +R
Sbjct: 308 GQHLAVVRADGSLKCGNHTGSIHKVGALVQGQQSCNGWTFWHVGSGKTRTPIDSLRQDLR 367

Query: 370 KELYN 374
             L +
Sbjct: 368 SRLQS 372


>gi|302383800|ref|YP_003819623.1| DNA methylase N-4/N-6 domain protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194428|gb|ADL02000.1| DNA methylase N-4/N-6 domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 359

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 205/353 (58%), Positives = 258/353 (73%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I +G+ + +L  LP +SVD++FADPPYNLQL G L RPD+S VDAV D WDKF SF A
Sbjct: 7   DIIHRGDCLEILRGLPDRSVDMVFADPPYNLQLGGDLLRPDNSKVDAVDDDWDKFDSFAA 66

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAF R WL  CRRVLK  G+LWVIGSYHNIFR+GT +Q++ +W+LNDIVWRK+NPMPNF
Sbjct: 67  YDAFCRDWLKECRRVLKDEGSLWVIGSYHNIFRLGTAIQDIGYWVLNDIVWRKTNPMPNF 126

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWA+ S + K YTFNYDALKA NED QMRSDW   +C+G ER++ +DG
Sbjct: 127 KGTRFTNAHETLIWAAKSREQKRYTFNYDALKAFNEDTQMRSDWTFALCTGEERIKGEDG 186

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R+++++T+PGD+ILDPFFG+GT+GA AK+L R +IGIE   +Y ++
Sbjct: 187 KKAHPTQKPEALLHRVILAATRPGDVILDPFFGTGTTGAAAKRLGRHYIGIERDPEYANV 246

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI +V P    +L V   KR E +V F  LVE GL+ PG +L   +G   A V ADG
Sbjct: 247 AEKRIKAVLPARPEDLIVTGSKRAEVKVPFGALVEAGLLSPGDVLYCPKGEREARVRADG 306

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           +L+SG   GSIH++GA    +  CNGW +W F     L SI+ LR  VR  + 
Sbjct: 307 SLVSGAMSGSIHKLGALFENAPACNGWTYWRFRTDTGLRSIDALRAEVRAGMQ 359


>gi|254293434|ref|YP_003059457.1| DNA methylase N-4/N-6 domain protein [Hirschia baltica ATCC 49814]
 gi|254041965|gb|ACT58760.1| DNA methylase N-4/N-6 domain protein [Hirschia baltica ATCC 49814]
          Length = 363

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 208/353 (58%), Positives = 267/353 (75%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD I+ G+ I ++  LP KSVDL+FADPPYNLQL G L RPD+S VDAV + WD+F+SFE
Sbjct: 8   KDHILIGDCIELMNSLPEKSVDLVFADPPYNLQLGGDLVRPDNSKVDAVDNEWDQFASFE 67

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FT+ WL A RRVLK +G +WVIGSYHNIFR+G+ LQ+L FWILND++W KSNPMPN
Sbjct: 68  TYDNFTKDWLTAARRVLKDDGAIWVIGSYHNIFRVGSQLQDLGFWILNDVIWNKSNPMPN 127

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIWA+ S + K YTFNYDALK AN+DVQMRSDW IPICSG ERL+N +
Sbjct: 128 FKGTRFTNAHETLIWATKSKEQKKYTFNYDALKTANDDVQMRSDWTIPICSGGERLKNDE 187

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPEALL R+++++TK GD +LDPFFG+GT+GAVAK L R FIG+E ++DY  
Sbjct: 188 GKKAHPTQKPEALLHRVIMATTKQGDTVLDPFFGTGTTGAVAKMLGRHFIGLEREEDYAA 247

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A  RI +V+ + +++L V   KR+ PRV F  L+ERG ++PG  L   +    A V AD
Sbjct: 248 VAQARIDNVRKVDDVDLQVTQPKRSAPRVPFGALIERGFLRPGDRLYCPKQQHIARVRAD 307

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           G+L +G + GSIHR+GA+V  + +CNGW FW+++    L  I+ LR   R E+
Sbjct: 308 GSLANGDDTGSIHRLGAQVQNAPSCNGWTFWHYKSDQGLAPIDLLRRKFRTEM 360


>gi|144899369|emb|CAM76233.1| DNA methylase N-4/N-6 [Magnetospirillum gryphiswaldense MSR-1]
          Length = 357

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 215/355 (60%), Positives = 272/355 (76%), Gaps = 3/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D I++G+ I+ +E LPAKSVDL+FADPPYNLQL G+L RP++S VD V D WD+F SF 
Sbjct: 5   LDTILQGDCIAQMEALPAKSVDLVFADPPYNLQLGGELLRPNNSRVDGVDDDWDRFDSFR 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTR WL A RRVLK +G LWVIGSYHNIFR+G  LQ+L FW+LNDIVWRKSNPMPN
Sbjct: 65  DYDDFTRRWLAAARRVLKDDGALWVIGSYHNIFRVGASLQDLGFWMLNDIVWRKSNPMPN 124

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG RF NAHETLIW + S ++  YTFNY+A+KA N+D+QMRSDW IP+C+GSERL+N D
Sbjct: 125 FRGTRFTNAHETLIWCAKSAES-RYTFNYEAMKALNDDLQMRSDWTIPLCTGSERLKN-D 182

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPE LL R+L+++TKPGD++LDPFFG+GT+GAVAKKL+R FIG E   DYI 
Sbjct: 183 GTKVHPTQKPEMLLYRVLMATTKPGDVVLDPFFGTGTTGAVAKKLKRHFIGCERDPDYIK 242

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT-NAQGNISATVCA 318
            A +RI+ V+P+  + L     K++EPRV F  +VERGL++ G +L  N + +++A V A
Sbjct: 243 AAQERISKVRPVSELSLLSTPSKKSEPRVPFGTVVERGLLEVGTVLYGNGKDSLTAKVRA 302

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTLIS    GSIH+VGA V  +  CNGW FW+ ++  EL  I+ LR  +R EL+
Sbjct: 303 DGTLISADHRGSIHKVGALVQNAPACNGWTFWHLKQGDELVPIDVLRQKIRAELH 357


>gi|49475250|ref|YP_033291.1| adenine DNA methyltransferase protein [Bartonella henselae str.
           Houston-1]
 gi|49238055|emb|CAF27262.1| Adenine DNA methyltransferase protein [Bartonella henselae str.
           Houston-1]
          Length = 378

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 243/356 (68%), Positives = 296/356 (83%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
             W++KI+KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPDHSLVDAV D+WD+F 
Sbjct: 17  MSWRNKILKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGALYRPDHSLVDAVDDAWDQFE 76

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           +F AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FWILNDI+WRK+NP
Sbjct: 77  NFAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTALQDLGFWILNDIIWRKNNP 136

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           MPNFRGRRFQNAHETLIWA    K K YTFNYDALKAANED+QMRSDWL P+C+G+ERL+
Sbjct: 137 MPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDIQMRSDWLFPLCTGAERLK 196

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++ G KLHPTQKP+ LL+RI+++S+KPGDIILDPFFGSGT+GAVAK L R F+GIE +Q 
Sbjct: 197 DEAGRKLHPTQKPQPLLARIIIASSKPGDIILDPFFGSGTTGAVAKLLGRDFVGIEREQQ 256

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
           YID A +RIA ++PL   EL +L  K+ EPRVAFN L+E GLI PG++L + +  +SA V
Sbjct: 257 YIDAAYERIAKIKPLNEPELAILDRKKAEPRVAFNSLLEAGLICPGEVLYDRKKQVSAIV 316

Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            ADGTL+ G E GSIH +G K    ++CNGW FWY+E+ G+L SIN LR+++R ++
Sbjct: 317 RADGTLMYGGEAGSIHAMGRKAQDLQSCNGWTFWYYEEDGQLKSINELRMVIRSQM 372


>gi|110633120|ref|YP_673328.1| DNA adenine methylase CcrM [Mesorhizobium sp. BNC1]
 gi|110284104|gb|ABG62163.1| DNA adenine methylase CcrM [Chelativorans sp. BNC1]
          Length = 372

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 234/355 (65%), Positives = 288/355 (81%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W D I+KG+ ++ LE+LP KSVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F S
Sbjct: 18  DWLDDILKGDCVAALERLPEKSVDVIFADPPYNLQLEGALHRPDQSLVDAVDDEWDQFES 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F AYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G ++Q+L FWILNDIVWRK+NPM
Sbjct: 78  FAAYDAFTRAWLLAARRVLKPNGTVWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKTNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHET+IWAS    AKGYTFNY+A+KAAN+D+QMRSDWL PIC+G ERL++
Sbjct: 138 PNFRGRRFQNAHETMIWASRDRNAKGYTFNYEAMKAANDDLQMRSDWLFPICTGKERLKD 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            DG K+HPTQKPEALL+R+L+SSTKPGD++LDPFFGSGT+GAVAK+L R F+GIE   DY
Sbjct: 198 ADGNKVHPTQKPEALLARVLLSSTKPGDVVLDPFFGSGTTGAVAKRLGRHFVGIERDPDY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           I  A +RIA+V+PL    L  +  KR EPR+AF  L++ GL++PG  L +++   +A V 
Sbjct: 258 IAAARERIAAVEPLDQAALAPMAAKREEPRIAFASLLDSGLVKPGMQLYDSKRRWAAHVR 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ADGTL  G E GSIHR+GA+V G + CNGW FW++E+ G L  I+ LR + R+ L
Sbjct: 318 ADGTLAVGPETGSIHRLGARVQGLDACNGWTFWHYEEKGALKPIDELRQVARRGL 372


>gi|326387696|ref|ZP_08209302.1| DNA methylase N-4/N-6 [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207742|gb|EGD58553.1| DNA methylase N-4/N-6 [Novosphingobium nitrogenifigens DSM 19370]
          Length = 388

 Score =  431 bits (1108), Expect = e-119,   Method: Composition-based stats.
 Identities = 203/348 (58%), Positives = 269/348 (77%), Gaps = 1/348 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I++G+ I  +  LP  S+D+IFADPPYNLQL G L RPD S VDAVT+ WDKF SF A
Sbjct: 36  NQILRGDCIEQMRALPTASIDMIFADPPYNLQLGGDLARPDGSHVDAVTNDWDKFDSFAA 95

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTR WL   RR+LKP+G++WVIGSYHNIFR+G +LQ++ FWILNDIVWRK+NPMPNF
Sbjct: 96  YDAFTREWLAEARRLLKPDGSIWVIGSYHNIFRVGAILQDMGFWILNDIVWRKANPMPNF 155

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS S K+  YTFNY A+K  N+++QMRSDW++PICSG ERLRNK G
Sbjct: 156 KGTRFTNAHETLIWASRSEKS-KYTFNYRAMKTLNDELQMRSDWVLPICSGQERLRNKRG 214

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL R+++++T PGD++LDPFFG+GT+GAVAK+L R +IG E ++ YI++
Sbjct: 215 AKAHPTQKPESLLYRVMLATTNPGDVVLDPFFGTGTTGAVAKRLGRHWIGCEREEGYIEV 274

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI    PL    L  +  ++++PRVAF  LVE G I+PG +L++ +G    TV ADG
Sbjct: 275 AEERIEMALPLDETALKTMQSRKSQPRVAFGQLVESGWIRPGAVLSDRKGRYCVTVRADG 334

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           ++++G + GSIH +GAK+ G+ +CNGW FW+ E  G++  I+ LR L 
Sbjct: 335 SIMAGDDSGSIHGIGAKLQGAPSCNGWTFWHIEHEGQVKQIDALRQLY 382


>gi|315498149|ref|YP_004086953.1| DNA methylase n-4/n-6 domain protein [Asticcacaulis excentricus CB
           48]
 gi|315416161|gb|ADU12802.1| DNA methylase N-4/N-6 domain protein [Asticcacaulis excentricus CB
           48]
          Length = 371

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 202/354 (57%), Positives = 261/354 (73%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D I  G  + +L+ LP KSVDL+FADPPYNLQL G L+RPD+S VDAV D WD+F+SFE
Sbjct: 18  LDTIHVGECVDILKSLPDKSVDLVFADPPYNLQLGGDLHRPDNSKVDAVDDEWDQFASFE 77

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTR W+  C+RVLK +G +WVIGSYHN+FR+G  LQ+L FW++ND++WRK+NPMPN
Sbjct: 78  AYDRFTREWMRECQRVLKDDGAIWVIGSYHNVFRLGVALQDLGFWVMNDVIWRKANPMPN 137

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIWA+ +   K YTFNYDALKA NED QMRSDW IP+C+G ERL+++D
Sbjct: 138 FKGTRFTNAHETLIWATKAKGQKRYTFNYDALKAFNEDTQMRSDWAIPLCTGEERLKDED 197

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPE+LL R+L++ +KPG ++LDPFFG+GT+GA AK+L R FIGIE  + Y  
Sbjct: 198 GNKVHPTQKPESLLYRVLLACSKPGHVVLDPFFGTGTTGAAAKRLGRHFIGIERDETYAK 257

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A +RIA VQ     +L  +  K+ EPRV F  LVE GL+QPG  L   +G  +A V AD
Sbjct: 258 HARERIARVQRANESDLATMGSKKAEPRVPFGALVEAGLLQPGDTLYCPKGQRTARVRAD 317

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           G+L+ G   GSIH+VGA +  + +CNGW FW F+       I+ LR  +R++ +
Sbjct: 318 GSLVHGELTGSIHKVGAMLEQAPSCNGWTFWRFKTDAGFKPIDDLRARIRQQGH 371


>gi|329850291|ref|ZP_08265136.1| modification methylase CcrMI [Asticcacaulis biprosthecum C19]
 gi|328840606|gb|EGF90177.1| modification methylase CcrMI [Asticcacaulis biprosthecum C19]
          Length = 374

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 201/354 (56%), Positives = 258/354 (72%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D I  G  I VL+ LP  SVDL+FADPPYNLQL G L RPD+S VDAV D WD+F+SFE
Sbjct: 21  LDTIHIGECIEVLKSLPDASVDLVFADPPYNLQLGGDLLRPDNSKVDAVDDEWDQFASFE 80

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTR W+  CRRVLK +G +WVIGSYHNIFR+G  +Q+L FW++ND++WRK+NPMPN
Sbjct: 81  VYDKFTREWMRECRRVLKDDGAMWVIGSYHNIFRLGVAMQDLGFWVMNDVIWRKANPMPN 140

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIWA+ +   K YTFNYDALKA NED QMRSDWLI +C+G ERL++++
Sbjct: 141 FKGTRFTNAHETLIWATKAKGQKRYTFNYDALKAFNEDTQMRSDWLISLCTGDERLKDEN 200

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPE+LL R+L++ +KPG ++LDPFFG+GT+GA AK+L R FIGIE  + Y  
Sbjct: 201 GNKAHPTQKPESLLYRVLLACSKPGQVVLDPFFGTGTTGAAAKRLGRHFIGIERDETYAR 260

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A +RIA V P     L V+  K+ EPR+ F  LVE GL+QPG +L   +G+ +A + AD
Sbjct: 261 HARERIAKVIPTTAENLNVVGSKKAEPRIPFGSLVEAGLLQPGDMLYTPKGDKTAKIRAD 320

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           G+L+ G   GSIH++GA +  S  CNGW +W F+    L  I+ LR  +R ++ 
Sbjct: 321 GSLVYGDLSGSIHKMGAMMEQSPACNGWTYWRFKTDAGLKPIDDLRARIRGDMN 374


>gi|319898539|ref|YP_004158632.1| adenine DNA methyltransferase protein CcrM [Bartonella clarridgeiae
           73]
 gi|319402503|emb|CBI76046.1| adenine DNA methyltransferase protein CcrM [Bartonella clarridgeiae
           73]
          Length = 386

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 237/359 (66%), Positives = 297/359 (82%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           +S  +W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPDHS V+AV D+WD
Sbjct: 22  SSQTQWRNKIFKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGVLYRPDHSRVNAVDDAWD 81

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           +F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WRK
Sbjct: 82  QFESFSAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRK 141

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NPMPNFRGRRFQNAHETLIWA    K K YTFNY+ALKAANED QMRSDWL P+C+G+E
Sbjct: 142 NNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYNALKAANEDRQMRSDWLFPLCTGAE 201

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           RL++K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK   R F+GIE 
Sbjct: 202 RLKDKVGRKLHPTQKPQSLLARIIIASSKPGDVILDPFFGSGTTGAVAKLFGRDFVGIER 261

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
           +Q YID A +RIA+++PL   EL +L  K+TEPRVAF+ L++ GL+ PG +L + +  IS
Sbjct: 262 EQHYIDAACERIAAIKPLAESELEILKTKKTEPRVAFSSLLDLGLLYPGSVLYDKKKEIS 321

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           A V ADGT++ G E GSIH +G K   S++CNGW FWY+E+ G L SI+ LR+++R ++
Sbjct: 322 AIVRADGTIMYGGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDDLRMMIRSQM 380


>gi|114798609|ref|YP_760602.1| modification methylase CcrM [Hyphomonas neptunium ATCC 15444]
 gi|114738783|gb|ABI76908.1| modification methylase CcrM [Hyphomonas neptunium ATCC 15444]
          Length = 360

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 192/354 (54%), Positives = 253/354 (71%), Gaps = 2/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ II+G+ I VL ++P KSVDL+FADPPYNLQL G L RPD S+VD V D WDKF+SF+
Sbjct: 5   RNTIIQGDCIEVLSRIPDKSVDLVFADPPYNLQLGGGLTRPDQSVVDGVDDEWDKFASFD 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FT  WL  CRRVLK +G +WVIGSYHNIFR+GT+LQ+  FWI ND++W KSNPMPN
Sbjct: 65  DYDLFTHQWLEECRRVLKDDGAIWVIGSYHNIFRVGTVLQDQGFWIQNDVIWLKSNPMPN 124

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RFQNAHETLIWA  S  ++  TFNYDALK  NED QMRSDW IP+C+G ERL+++ 
Sbjct: 125 FKGTRFQNAHETLIWAGKSKDSRV-TFNYDALKTFNEDKQMRSDWTIPLCTGGERLKDEA 183

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPE+LL R+L++++ P D++LDPF G+GT+ A A++L R FIGIE ++ Y  
Sbjct: 184 GRKAHPTQKPESLLHRVLLATSNPRDLVLDPFSGTGTTAAAARRLGRDFIGIEREEGYAR 243

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           ++  RI ++ PL    L     K++  RV F  L+E G ++PG  L +AQ    A +  D
Sbjct: 244 LSRARINAITPLEGEVLETERSKKSLARVPFGALIETGWLKPGDRLFSAQRRHQARIRVD 303

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE-LHSINTLRILVRKEL 372
           G+L +G   GSIHR+GA+V  +  CNGW +W++E     L  I+ LR   R+E+
Sbjct: 304 GSLTTGAITGSIHRLGAQVQQAPACNGWTYWHYETDKRDLAPIDLLRRRYREEM 357


>gi|83313087|ref|YP_423351.1| modification methylase CcrMI [Magnetospirillum magneticum AMB-1]
 gi|82947928|dbj|BAE52792.1| Modification methylase CcrmI [Magnetospirillum magneticum AMB-1]
          Length = 358

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 206/356 (57%), Positives = 263/356 (73%), Gaps = 4/356 (1%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I+++  LPA SVDLIFADPPYNLQL G+L RP++S V+ V + WD+FS F 
Sbjct: 5   LNTILSGDCIAMMNSLPAGSVDLIFADPPYNLQLGGELLRPNNSKVEGVDEEWDRFSDFA 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD+FTR WL A RRVLK +G LWVIGSYHNIFR+G++LQ+L FW+LNDIVWRKSNPMPN
Sbjct: 65  AYDSFTRDWLKAARRVLKDDGGLWVIGSYHNIFRVGSILQDLGFWMLNDIVWRKSNPMPN 124

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHET+IW + S  +  YTFNYD +KA N+D+QMRSDW +P+C+G ERLRN  
Sbjct: 125 FKGTRFTNAHETMIWCAKSSDS-RYTFNYDTMKALNDDLQMRSDWTLPLCTGGERLRNA- 182

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPE+LL R++++STKPGD++LDPFFG+GT+GAVAKKL R+FIG E   +YI 
Sbjct: 183 GRKTHPTQKPESLLYRVIMASTKPGDVVLDPFFGTGTTGAVAKKLGRNFIGCERDPEYIA 242

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS-ATVCA 318
            A  RIA V P+ +  L +   KR EPRV F  ++ERGL+  G +L     +   A V A
Sbjct: 243 AAKDRIAKVIPVADPSLLLTPSKRAEPRVPFGTVLERGLLTAGDLLFGGTRHDKVAKVRA 302

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE-LHSINTLRILVRKELY 373
           DGTLI+    GSIH+VGA V G+  CNGW +W+F+   E    I+ LR  +R EL+
Sbjct: 303 DGTLITDDHRGSIHKVGALVQGAPACNGWTYWHFQASSEDFLPIDVLRQKIRAELH 358


>gi|126724760|ref|ZP_01740603.1| Site-specific DNA-methyltransferase [Rhodobacterales bacterium
           HTCC2150]
 gi|126705924|gb|EBA05014.1| Site-specific DNA-methyltransferase [Rhodobacterales bacterium
           HTCC2150]
          Length = 345

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 204/343 (59%), Positives = 261/343 (76%), Gaps = 1/343 (0%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F SF  YD F+ AWL A
Sbjct: 1   MNALPENSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDHWDQFDSFRVYDEFSNAWLKA 60

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            +R+LKP+G +WVIGSYHNIFR+GT +QN  FW+LND++WRKSNPMPNFRG+RF NAHET
Sbjct: 61  AQRILKPDGAIWVIGSYHNIFRVGTAMQNAGFWMLNDVIWRKSNPMPNFRGKRFTNAHET 120

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           LIWAS + K+K  TFNY+ALKA NE +QMRSDW++P+C+G ERL+N+DG+K HPTQKPE+
Sbjct: 121 LIWASKTEKSKP-TFNYEALKALNEGIQMRSDWVLPLCTGHERLKNEDGDKAHPTQKPES 179

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           LL R+LV++T PGD++LDPFFG+GT+GAVAKKL R FIGIE +++Y  +AT R+  V+  
Sbjct: 180 LLHRVLVATTNPGDVVLDPFFGTGTTGAVAKKLGRDFIGIEREEEYRKVATARLRDVRKY 239

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
               L V   KR EPRV F  +VERG++ PG+ L +  G   A V ADGTLI     GSI
Sbjct: 240 DRSSLEVTQSKRAEPRVPFGQIVERGMLNPGENLFSLNGRHKAKVRADGTLIGDDVKGSI 299

Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           H+VGA + G+ +CNGW +W ++  G++  I+ LR  VR E+ +
Sbjct: 300 HQVGAALEGAPSCNGWTYWGYKSEGKMVPIDLLRQQVRAEMSD 342


>gi|94497422|ref|ZP_01303992.1| DNA methylase N-4/N-6 [Sphingomonas sp. SKA58]
 gi|94423053|gb|EAT08084.1| DNA methylase N-4/N-6 [Sphingomonas sp. SKA58]
          Length = 391

 Score =  428 bits (1100), Expect = e-118,   Method: Composition-based stats.
 Identities = 200/348 (57%), Positives = 264/348 (75%), Gaps = 2/348 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D +++G+ I+ +  LP K +D+IFADPPYNLQL G L+RP+ S VDAV + WDKF +  +
Sbjct: 40  DTLLRGDCIAQMAALPDKCIDMIFADPPYNLQLGGDLFRPEGSRVDAVDNDWDKFDTLGS 99

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT+AWL   RR+LKPNGT+WVIGSYHNIFR+G+ LQ+  FWILNDI+WRK+NPMPNF
Sbjct: 100 YDRFTKAWLREARRILKPNGTIWVIGSYHNIFRVGSALQDEGFWILNDIIWRKANPMPNF 159

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS    A  YTFNY A+K  N+++QMRSDW++PIC G ERL+ ++G
Sbjct: 160 KGTRFTNAHETLIWASQGEDA-KYTFNYKAMKTLNDELQMRSDWVLPICGGQERLK-RNG 217

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL R+L+S TKPGD++LDPFFG+GT+GAVAK+L R +IGIE ++DYI++
Sbjct: 218 TKAHPTQKPESLLYRVLLSCTKPGDVVLDPFFGTGTTGAVAKRLGRRWIGIEREEDYIEV 277

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RIA   PL    LT++   R++P+VAF  LVE G ++PG ILT+ +    A V ADG
Sbjct: 278 ALERIADALPLDESALTIMQSARSQPKVAFGTLVETGYLKPGAILTDTKRRWQAQVRADG 337

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           +L  G + GSIH++GA + G+ +CNGW FW++E  G L  I+ LR   
Sbjct: 338 SLAVGADSGSIHKMGATLQGAPSCNGWTFWHYEAEGGLKPIDALRQTY 385


>gi|49474012|ref|YP_032054.1| adenine DNA methyltransferase protein [Bartonella quintana str.
           Toulouse]
 gi|49239515|emb|CAF25872.1| Adenine DNA methyltransferase protein [Bartonella quintana str.
           Toulouse]
          Length = 378

 Score =  428 bits (1100), Expect = e-118,   Method: Composition-based stats.
 Identities = 242/361 (67%), Positives = 297/361 (82%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
             +S   W++KI+KG+ ++VLEKLP  SVD+IFADPPYNLQL+G LYRPDHSLVDAV D+
Sbjct: 12  RTSSQTSWRNKILKGDCVAVLEKLPKHSVDVIFADPPYNLQLDGALYRPDHSLVDAVDDA 71

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WD+F SF AYDAFTRAWLLACRRVLKP+GTLWVIGSYHNIFR+GT LQ+L FW+LNDI+W
Sbjct: 72  WDQFESFAAYDAFTRAWLLACRRVLKPHGTLWVIGSYHNIFRVGTALQDLGFWMLNDIIW 131

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RK+NPMPNFRGRRFQNAHETLIWA    K K YTFNYDALKA NEDVQMRSDWL P+C+G
Sbjct: 132 RKNNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAGNEDVQMRSDWLFPLCTG 191

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +ERL+++ G KLHPTQKP+ LL+RI+++S+KPGDIILDPFFGSGT+GAVAK L R F+GI
Sbjct: 192 AERLKDEAGRKLHPTQKPQTLLTRIIMASSKPGDIILDPFFGSGTTGAVAKLLGRDFVGI 251

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           E +Q YID A +RIA+V+PL   EL +L  K+ EPRVAFN L+E GL+ PG++L + +  
Sbjct: 252 EREQQYIDAAYERIAAVEPLNKPELAILDRKKAEPRVAFNSLLEAGLLCPGEVLYDRKKR 311

Query: 312 ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           +SA V ADGTL+   E GSIH +G K   S++CNGW FWY+E+ G L SI+ LR+++R  
Sbjct: 312 VSAIVRADGTLMYSGEAGSIHAMGRKAQDSQSCNGWTFWYYEENGRLKSIDGLRMIIRSR 371

Query: 372 L 372
           +
Sbjct: 372 M 372


>gi|23016143|ref|ZP_00055902.1| COG0863: DNA modification methylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 358

 Score =  428 bits (1100), Expect = e-118,   Method: Composition-based stats.
 Identities = 205/356 (57%), Positives = 266/356 (74%), Gaps = 4/356 (1%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I+++  LPA SVDL+FADPPYNLQL G+L RP++S V+ V + WD+FS F 
Sbjct: 5   LNTILSGDCIAMMNSLPAGSVDLVFADPPYNLQLGGELLRPNNSKVEGVDEDWDRFSDFA 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYDAFTR WL A RRVLK +G LWVIGSYHNIFR+G +LQ+L FW+LNDIVWRK+NPMPN
Sbjct: 65  AYDAFTREWLKAARRVLKDDGGLWVIGSYHNIFRVGAILQDLGFWMLNDIVWRKTNPMPN 124

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHET+IW + S  +  YTFNYD++K+ N+D+QMRSDW +P+C+G+ERLR K 
Sbjct: 125 FKGTRFTNAHETMIWCAKSSDS-RYTFNYDSMKSLNDDLQMRSDWTLPLCTGAERLR-KA 182

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPE+LL R++++STKPGD++LDPFFG+GT+GAVAKKL R+FIG E   DYI 
Sbjct: 183 GRKTHPTQKPESLLYRVIMASTKPGDVVLDPFFGTGTTGAVAKKLGRNFIGCERDPDYIA 242

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS-ATVCA 318
            A +RIA V  + +  L +   KR EPR+ F  ++ERGL+ PG +L     +   A V A
Sbjct: 243 AAKERIAKVIQVADPSLLMTPSKRAEPRIPFGTVLERGLLTPGDLLFGGTRHDKVAKVRA 302

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE-LHSINTLRILVRKELY 373
           DGTLI+    GSIH+VGA V G+  CNGW +W+F+  GE    I+ LR  +R EL+
Sbjct: 303 DGTLITDDHRGSIHKVGALVQGAPACNGWTYWHFQASGEDYLPIDVLRQKIRAELH 358


>gi|121602378|ref|YP_988732.1| modification methylase CcrMI [Bartonella bacilliformis KC583]
 gi|120614555|gb|ABM45156.1| modification methylase CcrMI [Bartonella bacilliformis KC583]
          Length = 378

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 239/361 (66%), Positives = 298/361 (82%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           N  S   W ++I KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPDHSLVDAV D+
Sbjct: 12  NSPSQIPWCNQIFKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGVLYRPDHSLVDAVDDA 71

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WD+F SF AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FW+LNDI+W
Sbjct: 72  WDQFESFAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTTLQDLGFWVLNDIIW 131

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RK+NPMPNFRGRRFQNAHETLIWA    K K YTFNYD+LKAAN+DVQMRSDWL P+C+G
Sbjct: 132 RKNNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDSLKAANDDVQMRSDWLFPLCTG 191

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +ERL+++ G+KLHPTQKP+ALL+RI+++++K GD+ILDPFFGSGT+GAVAK L R+F+GI
Sbjct: 192 AERLKDEAGDKLHPTQKPQALLARIIMAASKSGDVILDPFFGSGTTGAVAKLLGRNFVGI 251

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           E +Q YID A +RIA+V+PL   EL ++ GK+ EPRVAF  L+E GL+ PG +L + +  
Sbjct: 252 EREQRYIDAAHERIAAVKPLAKSELEIIKGKKAEPRVAFINLLEAGLLCPGSVLYDKKKR 311

Query: 312 ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           +SA V ADGT++   E GSIH +G KV  S++CNGW FWY+E  G+L SI+ LR+++R +
Sbjct: 312 VSAIVRADGTIMCDNEAGSIHAIGRKVQVSQSCNGWTFWYYEDNGKLKSIDDLRMVIRSQ 371

Query: 372 L 372
           +
Sbjct: 372 I 372


>gi|294012714|ref|YP_003546174.1| putative adenine-specific DNA-methyltransferase [Sphingobium
           japonicum UT26S]
 gi|292676044|dbj|BAI97562.1| putative adenine-specific DNA-methyltransferase [Sphingobium
           japonicum UT26S]
          Length = 371

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 200/348 (57%), Positives = 264/348 (75%), Gaps = 2/348 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D++++G+ I+ + KLP   +D+IFADPPYNLQL G L+RP+   VDAV + WDKF +  +
Sbjct: 20  DRLLRGDCIAEMAKLPDACIDMIFADPPYNLQLGGDLFRPEGGRVDAVDNDWDKFDTLGS 79

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT+AWL   RR+LKPNGT+WVIGSYHNIFR+GT LQ+  FWILNDIVWRKSNPMPNF
Sbjct: 80  YDRFTKAWLREARRILKPNGTIWVIGSYHNIFRVGTALQDEGFWILNDIVWRKSNPMPNF 139

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS    A  YTFNY A+K  N+++QMRSDW++PIC G ERL+ ++G
Sbjct: 140 KGTRFTNAHETLIWASQGEDA-KYTFNYKAMKTLNDELQMRSDWVLPICGGQERLK-RNG 197

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL R+L++ T+PGD++LDPFFG+GT+GAVAK+L R +IGIE ++DYI++
Sbjct: 198 TKAHPTQKPEALLYRVLLACTRPGDVVLDPFFGTGTTGAVAKRLGRRWIGIEREEDYIEV 257

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI +  PL    LT++   + +P+VAF  LVE G +QPG +LT+++    A V ADG
Sbjct: 258 ALERIEAALPLDESALTIMQSAKAQPKVAFGTLVETGYLQPGAVLTDSKRRWQAVVRADG 317

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           +L  GT+ GSIH++GA + G+ +CNGW FW+ E  G L  I+ LR   
Sbjct: 318 SLSVGTDTGSIHKMGATLQGAPSCNGWTFWHCEVEGVLKPIDALRQTY 365


>gi|319406873|emb|CBI80508.1| adenine DNA methyltransferase protein CcrM [Bartonella sp. 1-1C]
          Length = 378

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 238/359 (66%), Positives = 299/359 (83%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           +S  +W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPD+S VDAV D+WD
Sbjct: 14  SSQTQWRNKIFKGDCVAVLEKLPKHSVDVIFADPPYNLQLEGVLYRPDYSRVDAVDDAWD 73

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           +F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WRK
Sbjct: 74  QFESFAAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRK 133

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NPMPNFRGRRFQNAHETLIWA    K K YTFNYDALKAANED QMRSDWL P+C+G+E
Sbjct: 134 NNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDRQMRSDWLFPLCTGAE 193

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           RL++K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R+F+GIE 
Sbjct: 194 RLKDKIGRKLHPTQKPQSLLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRNFVGIER 253

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
           +Q YID A++RIA+V+PL   EL +L  K+ EPR+AF+ L++ GL+ PG IL + +  +S
Sbjct: 254 EQHYIDAASERIAAVKPLAKSELEILKTKKAEPRIAFSSLLDAGLLYPGSILYDKKKEVS 313

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           A V ADGT++   E GSIH +G K   S++CNGW FWY+E+ G L SI++LR++VR ++
Sbjct: 314 ALVRADGTIMYDGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDSLRMMVRSQM 372


>gi|148557470|ref|YP_001265052.1| DNA methylase N-4/N-6 domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148502660|gb|ABQ70914.1| DNA methylase N-4/N-6 domain protein [Sphingomonas wittichii RW1]
          Length = 382

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/354 (57%), Positives = 264/354 (74%), Gaps = 2/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++I++G+ I  +  LP + VD+IFADPPYNLQL G L+RPD S VDAV D WDKF +F 
Sbjct: 28  LNEILRGDCIETMRALPDRCVDMIFADPPYNLQLGGDLHRPDGSQVDAVDDDWDKFDTFA 87

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTR WL    R+LK +GT+WVIGSYHNIFR+GT LQ+  FW+LNDIVWRK+NPMPN
Sbjct: 88  AYDRFTRDWLREAHRILKDDGTIWVIGSYHNIFRVGTALQDQGFWVLNDIVWRKANPMPN 147

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIW S + KA  YTFNY  +KA N+DVQMRSDW +PICSG ERL++ D
Sbjct: 148 FKGTRFTNAHETLIWCSKAEKA-KYTFNYRTMKALNDDVQMRSDWTLPICSGGERLKDDD 206

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPE+LL R++++ T+PGD++LDPFFG+GT+GAVA++L R +IGIE +  YI 
Sbjct: 207 GHKAHPTQKPESLLYRVMLACTEPGDLVLDPFFGTGTTGAVARRLGRRWIGIEREDKYIK 266

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +AT+RIA+  PL    +  +  K+  PR+AF LLVE GLI PG ++T+A+   SATV AD
Sbjct: 267 VATQRIAATLPLDESAMMSIPEKKAMPRIAFGLLVEGGLIPPGSVVTDARRRWSATVRAD 326

Query: 320 GTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           G L SG   +GSIHR+GA++  + +CNGW+FW+ E    L  I+ +R     EL
Sbjct: 327 GMLASGCGAIGSIHRLGAQLQKAPSCNGWSFWHIETAQGLEPIDAVRQRHLAEL 380


>gi|209966434|ref|YP_002299349.1| modification methylase, putative [Rhodospirillum centenum SW]
 gi|209959900|gb|ACJ00537.1| modification methylase, putative [Rhodospirillum centenum SW]
          Length = 366

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 203/357 (56%), Positives = 270/357 (75%), Gaps = 5/357 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I ++ ++PA SVD++FADPPYNLQL+G+L RP+HS VD V + WD+FS    
Sbjct: 11  NRILVGDCIQLMSQMPAGSVDMVFADPPYNLQLSGELLRPNHSRVDGVDEEWDRFSDLPT 70

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A R  LK +GTLWVIGSYHNIFR+G++LQ+L FWILNDIVWRKSNPMPNF
Sbjct: 71  YDRFTRDWLGAARHALKDDGTLWVIGSYHNIFRVGSILQDLGFWILNDIVWRKSNPMPNF 130

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +GRRF NAHETLIW + S +A  Y F Y+A+K  NE++QMRSDW +P+C+G+ERLR +DG
Sbjct: 131 KGRRFTNAHETLIWVAKSREA-KYYFAYEAMKNLNEELQMRSDWTLPLCTGAERLRGEDG 189

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R+L+++T+P D++LDPFFG+GT+GAVAK+LRR +IGIE + +Y  +
Sbjct: 190 QKAHPTQKPEALLYRVLLAATRPDDLVLDPFFGTGTTGAVAKQLRRRWIGIEREHEYARL 249

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RIA+V+ L   EL  +  +RT+PRV F  LVERGL++PG  L + +  + A V ADG
Sbjct: 250 ANARIAAVEELAEPELVDVPARRTQPRVPFGHLVERGLLKPGTNLFDQRRRVIAKVRADG 309

Query: 321 TLIS----GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TL++    G   GSIH+VGA V G   CNGW +W+F++   L  I+ LR  V  E++
Sbjct: 310 TLVAQNHLGQHSGSIHKVGAAVQGLPACNGWTYWHFQEGKSLAPIDVLRQKVIAEMH 366


>gi|114769696|ref|ZP_01447306.1| Site-specific DNA-methyltransferase [alpha proteobacterium
           HTCC2255]
 gi|114549401|gb|EAU52283.1| Site-specific DNA-methyltransferase [alpha proteobacterium
           HTCC2255]
          Length = 368

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 214/362 (59%), Positives = 270/362 (74%), Gaps = 1/362 (0%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           + + SI    + II G+ + V+  LP  S+DLIFADPPYNLQL G L+RPD+S VDAV D
Sbjct: 6   KKEGSIKLPLNNIIDGDCVEVMNSLPENSIDLIFADPPYNLQLKGDLHRPDNSKVDAVDD 65

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            WD+F SF  YD F+R WL A RRVLKPNG LWVIGSYHNIFR+GT LQ+  FWILND++
Sbjct: 66  HWDQFDSFAIYDKFSRNWLKAARRVLKPNGALWVIGSYHNIFRVGTALQDAGFWILNDVI 125

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           WRKSNPMPNFRG R  NAHET+IWA  + K+K  TFNY+ALKA N+ VQMRSDW +PIC+
Sbjct: 126 WRKSNPMPNFRGVRLTNAHETMIWAGKTEKSKP-TFNYEALKALNDGVQMRSDWHLPICN 184

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G+ERL+N  G+K HPTQKPE+LL R++V ST  GD+ILDPFFGSGT+GAVAKKL R+FIG
Sbjct: 185 GNERLKNDAGDKAHPTQKPESLLHRVIVGSTNEGDVILDPFFGSGTTGAVAKKLGRNFIG 244

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
           IE +++Y  +A KRI +++      L V T KR EPRV F  +VERG+++PG  L +  G
Sbjct: 245 IEREEEYRKVAKKRIKAIKKYDVESLKVSTSKRAEPRVPFGQVVERGMLKPGDQLYSLNG 304

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
             SA + ADGTL++  + GSIH+VGA + G+ +CNGW +W F+K GE   I+ LR  +R 
Sbjct: 305 RHSAKIHADGTLVAHDQRGSIHQVGAALEGAPSCNGWTYWCFKKRGEAIPIDMLRKKIRA 364

Query: 371 EL 372
           E+
Sbjct: 365 EM 366


>gi|115526424|ref|YP_783335.1| DNA methylase N-4/N-6 domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115520371|gb|ABJ08355.1| DNA adenine methylase CcrM [Rhodopseudomonas palustris BisA53]
          Length = 379

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 214/351 (60%), Positives = 268/351 (76%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ ++ + KLP  SVDL+FADPPYNLQL G L RPD S VDAV D WDKFSSF AY
Sbjct: 26  RIVIGDCVAEMSKLPKASVDLVFADPPYNLQLKGDLKRPDESHVDAVNDDWDKFSSFAAY 85

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLL+CRR++KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRKSNPMPNFR
Sbjct: 86  DDFTRAWLLSCRRIMKPSATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKSNPMPNFR 145

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNY+ALKAANEDVQ RSDWLIP+C+G ERL+  DG+
Sbjct: 146 GRRFTNAHETMIWAARDENAKGYTFNYEALKAANEDVQARSDWLIPLCTGDERLKGADGK 205

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L R +IG E  +DY   A
Sbjct: 206 KVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRRYIGFERDKDYAKAA 265

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RI +++PL    L      R+ PRVAF  LVERG+I PG  L +++    A V ADG 
Sbjct: 266 RARIDAIEPLPEATLAPFVTARSAPRVAFAELVERGMILPGTKLVDSKKRHGALVRADGA 325

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  +R  +
Sbjct: 326 IMLGDKVGSIHRIGAVAQGSEACNGWTFWHVETKKGLKLIDELRAEIRSGM 376


>gi|39934101|ref|NP_946377.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris CGA009]
 gi|192289628|ref|YP_001990233.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39647949|emb|CAE26469.1| possible adenine DNA methyltransferase [Rhodopseudomonas palustris
           CGA009]
 gi|192283377|gb|ACE99757.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 376

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 275/351 (78%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ I+ +EKLP KSVDL+FADPPYNLQL G L RPD S VDAV D WDKF+SF AY
Sbjct: 24  RIIVGDCIAEMEKLPPKSVDLVFADPPYNLQLKGALKRPDESEVDAVDDDWDKFASFAAY 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLA RR++KP+ TLWVIGSYHNIFR+GT++Q+L FW+LNDIVWRKSNPMPNFR
Sbjct: 84  DNFTRAWLLAARRIMKPSATLWVIGSYHNIFRVGTIMQDLGFWVLNDIVWRKSNPMPNFR 143

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNYDALKAANEDVQ RSDWLIP+C+G ERL+ KDG+
Sbjct: 144 GRRFTNAHETMIWAARDENAKGYTFNYDALKAANEDVQARSDWLIPLCTGDERLKGKDGK 203

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+LRR++IGIE  + Y + A
Sbjct: 204 KVHPTQKPEQLLARVLLSSSKPGDLVVDPFNGTGTTGAVAKRLRRNYIGIERDKTYAEAA 263

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RI S++PL +  L      R  PRVAF+ L+ERG+I PG  L +++    A V ADG 
Sbjct: 264 RARIDSIEPLPDDTLKPFLTARDAPRVAFSELIERGMISPGARLVDSKKRHGALVRADGA 323

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  +R  +
Sbjct: 324 IMLGDKVGSIHRIGAVAQGSEACNGWTFWHVETSKGLRLIDELRAEIRSTM 374


>gi|298294362|ref|YP_003696301.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
 gi|296930873|gb|ADH91682.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
          Length = 395

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 229/358 (63%), Positives = 281/358 (78%), Gaps = 5/358 (1%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D I++G+ ++ L KLPA+SVD++FADPPYNLQL G+L RPD S VDAV D+WDKF SF+
Sbjct: 33  LDTILRGDCVAELSKLPARSVDMVFADPPYNLQLQGELKRPDDSRVDAVDDAWDKFESFQ 92

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYDAFTRAWLLA RRVLKP GTLWVIGSYHNIFR+G +LQ+L+FWILNDIVWRK+NPMPN
Sbjct: 93  AYDAFTRAWLLAVRRVLKPTGTLWVIGSYHNIFRVGALLQDLDFWILNDIVWRKTNPMPN 152

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWA+  P AKGYTFNY+ALKAANEDVQMRSDWL PICSG ERL+++D
Sbjct: 153 FRGRRFTNAHETLIWAAREPGAKGYTFNYEALKAANEDVQMRSDWLFPICSGGERLKDED 212

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKPEALL+R+++S++KPGD++LDPF GSGT+ AVA++L R F+GIE    Y D
Sbjct: 213 GRKLHPTQKPEALLARVILSASKPGDVVLDPFLGSGTTAAVARRLGRHFVGIERDPTYAD 272

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI +V+PL ++ L +    R  PRVAFN L+ERGL+ PG +LT+A+    A V AD
Sbjct: 273 AAQARIDAVEPLPDLALALAPTAREAPRVAFNSLIERGLLAPGTLLTDAKARTRALVRAD 332

Query: 320 GTLISG-----TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GTL         ++GSIHR GA   G + CNGW +W+ E    L  I+TLR ++R E+
Sbjct: 333 GTLSLETAPGLGQIGSIHRAGALAQGLDACNGWTYWHVETREGLKPIDTLRAVMRSEM 390


>gi|323135965|ref|ZP_08071048.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
 gi|322399056|gb|EFY01575.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
          Length = 392

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 207/354 (58%), Positives = 263/354 (74%), Gaps = 1/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ I++G+ + ++  LP +SVDL+FADPPYNLQL  +L RPD SLVDAV D WDKF+ F 
Sbjct: 34  RNAILQGDCVELMRGLPHESVDLVFADPPYNLQLASKLTRPDQSLVDAVDDDWDKFADFA 93

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YDAFTR WL A RRV+KP+ T++VIGSYHNIFR+G ++Q+L FWILNDIVWRK+NPMPN
Sbjct: 94  TYDAFTRDWLSAARRVMKPSATIFVIGSYHNIFRVGAIMQDLGFWILNDIVWRKNNPMPN 153

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHET+IWA+    AK YTFNY+ALKA NED QMRSDWL+PIC+G+ERL++ +
Sbjct: 154 FRGRRFTNAHETMIWAARDASAKSYTFNYEALKAGNEDCQMRSDWLLPICTGAERLKDAE 213

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPE LL+R+++S++  GD++LDPFFGSGT+GAVAK+LRR F+G+E    Y  
Sbjct: 214 GRKAHPTQKPETLLARVILSASNAGDLVLDPFFGSGTTGAVAKRLRRDFLGLERDPVYAK 273

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RIA ++PL    ++V   KR EPR+AF  LVE GLI PG  LT+ +    A V AD
Sbjct: 274 AANARIAEIEPLPEHAVSVAPSKRAEPRIAFASLVESGLIAPGARLTDLKKRHVAMVRAD 333

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELH-SINTLRILVRKEL 372
           GTL     +GSIH+ GA   G   CNGW FW++EK   L   I+ LR  +R  +
Sbjct: 334 GTLSLSGFIGSIHKTGALAQGLPACNGWTFWHYEKADGLVAPIDELRAQMRDHM 387


>gi|154245121|ref|YP_001416079.1| DNA methylase N-4/N-6 domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154159206|gb|ABS66422.1| DNA methylase N-4/N-6 domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 389

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 234/355 (65%), Positives = 279/355 (78%), Gaps = 3/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D+I+ G+SI ++  LPA SVDL+FADPPYNLQL G+L RPD SLVDAV D WD+F SF 
Sbjct: 31  LDQILLGDSIQMMAGLPAGSVDLVFADPPYNLQLGGELKRPDESLVDAVDDDWDRFDSFA 90

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YDAFTRAWLLA RR LKPNGTL+VIGSYHNIFR+G M+Q+L FWILNDIVWRK+NPMPN
Sbjct: 91  TYDAFTRAWLLAARRALKPNGTLFVIGSYHNIFRVGAMMQDLGFWILNDIVWRKANPMPN 150

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWA+ S  A  YTFNY+ALKA NEDVQ+RSDWL P+C+G ERL++  
Sbjct: 151 FRGRRFTNAHETLIWAARSADA-KYTFNYEALKAGNEDVQVRSDWLFPLCTGQERLKDGA 209

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+KLHPTQKPEALL+R+L+S+TKPGD++LDPFFGSGT+GAVAK+LRRSFIGIE ++ Y  
Sbjct: 210 GKKLHPTQKPEALLARVLLSATKPGDVVLDPFFGSGTTGAVAKRLRRSFIGIEREEAYAQ 269

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI +V+PL    L      R  PRVAF++LVERGL+ PG  LT+A+G   A V AD
Sbjct: 270 AARARIDAVEPLPEDALVAPPSAREAPRVAFSVLVERGLVTPGAELTDAKGRFRAVVRAD 329

Query: 320 GT--LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GT  L  G  +GSIHRVGA   G+E CNGW FW+ E+ G  H I+TLR  +R E+
Sbjct: 330 GTLALAGGQNVGSIHRVGALAQGAEACNGWTFWHVEEQGRRHPIDTLRARLRAEM 384


>gi|319408230|emb|CBI81883.1| adenine DNA methyltransferase protein CcrM [Bartonella
           schoenbuchensis R1]
          Length = 378

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 239/355 (67%), Positives = 294/355 (82%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W +KI+KG+ +++LEKLP  SVD+IFADPPYNLQL   LYRPD+S VDAV D+WD+F +
Sbjct: 18  QWCNKILKGDCVAMLEKLPKHSVDMIFADPPYNLQLENTLYRPDYSRVDAVNDAWDQFEN 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FW+LNDI+WRK+NPM
Sbjct: 78  FAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTALQDLGFWLLNDIIWRKNNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHETLIWA    K K YTFNY ALKAANEDVQMRSDWL P+C+G+ERL++
Sbjct: 138 PNFRGRRFQNAHETLIWAVRDQKDKKYTFNYKALKAANEDVQMRSDWLFPLCTGAERLKD 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           + G KLHPTQKP+ LL+RI+++S+KPGDIILDPFFGSGT+GAVAK L R+F+GIE +Q Y
Sbjct: 198 EIGRKLHPTQKPQTLLARIIMASSKPGDIILDPFFGSGTTGAVAKLLGRNFVGIEREQSY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A +RIA V+PL   ELTVL  K+ EPRVAF  L+E GL+ PG IL + +  +SA V 
Sbjct: 258 IDAAHERIAMVKPLAESELTVLANKKAEPRVAFTNLLEAGLLHPGMILYDRKKRVSAIVK 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ADGT++ G E GSIH +G K   S++CNGW FWY+E+ G+L SI+ LR+++R ++
Sbjct: 318 ADGTIMYGGEAGSIHMMGRKAQASQSCNGWTFWYYEEDGQLKSIDDLRMVIRSQM 372


>gi|319403861|emb|CBI77447.1| adenine DNA methyltransferase protein CcrM [Bartonella rochalimae
           ATCC BAA-1498]
          Length = 378

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 235/359 (65%), Positives = 296/359 (82%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           +S  +W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL   LYRPD+S VDAV D+WD
Sbjct: 14  SSQTQWRNKIFKGDCVAVLEKLPKHSVDVIFADPPYNLQLESVLYRPDYSRVDAVDDAWD 73

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           +F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WRK
Sbjct: 74  QFESFAAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRK 133

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NPMPNFRGRRFQNAHETLIWA    K K Y FNYDALKAANED QMRSDWL P+C+G+E
Sbjct: 134 NNPMPNFRGRRFQNAHETLIWAVRDQKDKKYIFNYDALKAANEDRQMRSDWLFPLCTGAE 193

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           RL++K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GIE 
Sbjct: 194 RLKDKIGRKLHPTQKPQSLLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGIER 253

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
           +Q YID A++RIA+V+PL   EL +L  K+ EPR+AF+ L++ GL+ PG IL + +  +S
Sbjct: 254 EQHYIDAASERIAAVKPLAKSELEILKTKKAEPRIAFSSLLDAGLLYPGSILYDKKKEVS 313

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           A V ADGT++   E GSIH +G K   S++CNGW FWY+E+ G L SI++LR+++R ++
Sbjct: 314 ALVRADGTIMYDGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDSLRMMIRSQM 372


>gi|307294524|ref|ZP_07574366.1| DNA methylase N-4/N-6 domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306878998|gb|EFN10216.1| DNA methylase N-4/N-6 domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 379

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 198/346 (57%), Positives = 260/346 (75%), Gaps = 2/346 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ I+ + KLP   +D+IFADPPYNLQL G L+RP+   VDAV + WDKF +  +YD
Sbjct: 30  LLRGDCIAEMAKLPDACIDMIFADPPYNLQLGGDLFRPEGGRVDAVDNDWDKFDTLGSYD 89

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT+AWL   RR+LKPNG++WVIGSYHNIFR+GT LQ+  FWILNDI+WRKSNPMPNF+G
Sbjct: 90  RFTKAWLREARRILKPNGSIWVIGSYHNIFRVGTALQDEGFWILNDIIWRKSNPMPNFKG 149

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            RF NAHETLIWAS    A  YTFNY A+K  N+++QMRSDW++PIC G ERL+ ++G K
Sbjct: 150 TRFTNAHETLIWASQGEDA-KYTFNYKAMKTLNDELQMRSDWVLPICGGQERLK-RNGTK 207

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPEALL R++++ TKPGD++LDPFFG+GT+GAVAK+L R +IGIE + DYI++A 
Sbjct: 208 AHPTQKPEALLYRVMLACTKPGDVVLDPFFGTGTTGAVAKRLGRKWIGIEREDDYIEVAL 267

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +RI +  PL    LT++   R +P+VAF  LVE G +QPG +LT+A+    A V ADG+L
Sbjct: 268 ERIEAALPLDESALTIMQTARQQPKVAFGTLVETGYLQPGAVLTDAKRRWQAVVRADGSL 327

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
             G + GSIH++GA + G+ +CNGW FW+ E  G L  I+ LR   
Sbjct: 328 SVGKDTGSIHKMGATLQGAPSCNGWTFWHCEIDGALKPIDALRQTY 373


>gi|319405302|emb|CBI78916.1| adenine DNA methyltransferase protein CcrM [Bartonella sp. AR 15-3]
          Length = 378

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 240/359 (66%), Positives = 295/359 (82%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           +S  +W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPD+S VDAV D+WD
Sbjct: 14  SSQTQWRNKIFKGDCVAVLEKLPKHSVDVIFADPPYNLQLEGVLYRPDYSRVDAVDDAWD 73

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           +F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WRK
Sbjct: 74  QFESFSAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRK 133

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NPMPNFRGRRFQNAHETLIWA    K K YTFNYDALKAANED QMRSDWL P+C+G+E
Sbjct: 134 NNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDRQMRSDWLFPLCTGAE 193

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           RL++K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GIE 
Sbjct: 194 RLKDKVGRKLHPTQKPQSLLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGIER 253

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
           +Q YID A +RIA V+PL   EL +L  KRTEPRVAF+ L++  L+ PG IL + +  IS
Sbjct: 254 EQHYIDAACERIAVVKPLAKSELEILKTKRTEPRVAFSSLLDARLLYPGSILYDKKKEIS 313

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           A V ADGT++   E GSIH +G K   S++CNGW FWY+E+ G L SI+ LR+++R ++
Sbjct: 314 AIVRADGTIMYDGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDDLRMMIRSQM 372


>gi|85373286|ref|YP_457348.1| modification methylase [Erythrobacter litoralis HTCC2594]
 gi|84786369|gb|ABC62551.1| modification methylase [Erythrobacter litoralis HTCC2594]
          Length = 380

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 194/347 (55%), Positives = 252/347 (72%), Gaps = 2/347 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ +  +  LP  SVDL+FADPPYNLQL G L RPD S VDAVTD WD+F SF  Y
Sbjct: 30  QILSGDCVEAMRSLPDASVDLVFADPPYNLQLGGDLNRPDGSHVDAVTDHWDQFDSFAIY 89

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL   +R+LKP+G LWVIGSYHNI+R+G +LQ+L FWILNDIVWRK+NPMPNFR
Sbjct: 90  DQFTREWLTEAKRILKPDGALWVIGSYHNIYRVGAILQDLGFWILNDIVWRKTNPMPNFR 149

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETL+WAS   KA  Y FNY A+K  N+++QMRSDW+IPIC+G+ERL+ ++G 
Sbjct: 150 GTRFTNAHETLLWASQGEKA-KYHFNYTAMKTLNDELQMRSDWVIPICNGAERLK-ENGT 207

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+L+++T+ GD+++DPFFG+GT+GAVAK+L R +IG E +  Y  +A
Sbjct: 208 KAHPTQKPEALLYRVLLATTEKGDVVVDPFFGTGTTGAVAKRLGREWIGCEREDVYRGVA 267

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRI    PL    L V+  KR  P+VAF  LVE G ++PG  + + +    ATV ADG+
Sbjct: 268 MKRIEKELPLDESALKVMQSKRAAPKVAFGALVEAGFLKPGTEVFDTKRRWVATVRADGS 327

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           L  G + GSIH +G ++ G+ +CNGW FW++E  G    ++  R L 
Sbjct: 328 LECGKQTGSIHGLGKELQGAPSCNGWTFWHYEDEGVAKPLDAARQLY 374


>gi|316932563|ref|YP_004107545.1| DNA methylase N-4/N-6 domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315600277|gb|ADU42812.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 376

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 219/351 (62%), Positives = 274/351 (78%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ I+ +EKLPAKSVDL+FADPPYNLQL G L RPD S VDAV D WDKF+SF AY
Sbjct: 24  QIIVGDCIAEMEKLPAKSVDLVFADPPYNLQLKGALKRPDESEVDAVDDDWDKFASFAAY 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLA RR++KP+ TLWVIGSYHNIFR+G ++Q+L FW+LNDIVWRKSNPMPNFR
Sbjct: 84  DNFTRAWLLAARRIMKPSATLWVIGSYHNIFRVGAIMQDLGFWLLNDIVWRKSNPMPNFR 143

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNYDALKAANEDVQ RSDWLIP+C+G ERL+ KDG+
Sbjct: 144 GRRFTNAHETMIWAARDENAKGYTFNYDALKAANEDVQARSDWLIPLCTGEERLKGKDGK 203

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS++PGD+++DPF G+GT+GAVAK+LRR++IG E  + Y + A
Sbjct: 204 KVHPTQKPEQLLARVLLSSSRPGDLVVDPFNGTGTTGAVAKRLRRNYIGFERDRTYAEAA 263

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RI +++PL +  L      R  PRVAF+ L+ERG+I PG  L +++    A V ADG 
Sbjct: 264 RARIDAIEPLPDDTLKPFLTARDAPRVAFSELIERGMISPGARLVDSKKRHGALVRADGA 323

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  +R  +
Sbjct: 324 IMLGDKVGSIHRIGAMAQGSEACNGWTFWHVETSKGLRLIDELRTEIRNTM 374


>gi|85707872|ref|ZP_01038938.1| Site-specific DNA-methyltransferase [Erythrobacter sp. NAP1]
 gi|85689406|gb|EAQ29409.1| Site-specific DNA-methyltransferase [Erythrobacter sp. NAP1]
          Length = 379

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 200/348 (57%), Positives = 255/348 (73%), Gaps = 2/348 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ I  +  LP  SVD +FADPPYNLQL G L RPD S VDAVTD WD+F SF AY
Sbjct: 29  QILDGDCIEAMRSLPDNSVDCVFADPPYNLQLGGDLNRPDGSEVDAVTDHWDQFDSFRAY 88

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL   RRVLKP+G+LWVIGSYHNIFR G +LQ+L FWILNDIVWRK+NPMPNF+
Sbjct: 89  DDFTREWLTEARRVLKPDGSLWVIGSYHNIFRCGAILQDLGFWILNDIVWRKTNPMPNFK 148

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS   KA  Y FNY A+K  N+++QMRSDW++PICSG ERL+ ++G+
Sbjct: 149 GTRFTNAHETLIWASQGEKA-RYHFNYRAMKTLNDELQMRSDWVLPICSGGERLK-ENGK 206

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+L+++T+ GD++LDPFFG+GT+GAVAK+L R +IG E ++ Y  +A
Sbjct: 207 KAHPTQKPEALLYRVLLATTEKGDVVLDPFFGTGTTGAVAKRLGREWIGCEREEFYRGVA 266

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRI    PL    LT +  K+  PRVAF  +VE GLI PG  + + +    ATV ADG+
Sbjct: 267 MKRIEKELPLDESALTTMQSKKAAPRVAFGAVVENGLIPPGTQVFDKKRRWVATVRADGS 326

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           L    ++GSIH +G ++  + +CNGW FW++E  GE+  ++  R L R
Sbjct: 327 LDCDGKVGSIHGLGKELQEAPSCNGWTFWHYENGGEIKPVDAARELYR 374


>gi|296284401|ref|ZP_06862399.1| modification methylase [Citromicrobium bathyomarinum JL354]
          Length = 383

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 200/347 (57%), Positives = 254/347 (73%), Gaps = 1/347 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ +  + +LP  SVDL+FADPPYNLQL G L RPD S VDAVTD WD+F SF+ Y
Sbjct: 32  QILDGDCVEAMRRLPDNSVDLVFADPPYNLQLGGDLNRPDGSHVDAVTDHWDQFDSFKVY 91

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F++AWL  CRRVLKP+G LWVIGSYHNI+R+G  LQ+L FWILNDIVWRK+NPMPNFR
Sbjct: 92  DDFSKAWLAECRRVLKPDGALWVIGSYHNIYRLGATLQDLGFWILNDIVWRKTNPMPNFR 151

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS   KA  Y FNY A+K  N+++QMRSDW  PICSG ERL++  G 
Sbjct: 152 GTRFTNAHETLIWASQGEKA-RYHFNYRAMKTLNDELQMRSDWTFPICSGGERLKDDAGH 210

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+L+++T+ GD++LDPFFG+GT+GA+AK+L R +IG E ++ Y  +A
Sbjct: 211 KAHPTQKPEALLYRVLLATTEWGDVVLDPFFGTGTTGAIAKRLGREWIGCEREESYRKVA 270

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RI    PL    LT +  KRT PRVAF  LVE G ++PG  + + Q   +ATV ADG+
Sbjct: 271 RARIEKELPLDESALTTMQSKRTAPRVAFGTLVEAGFVKPGTQVFDKQRRWTATVRADGS 330

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           L+     GSIH+VG  + G+ +CNGW FW+FE  G + +++  R L 
Sbjct: 331 LVHEKLNGSIHQVGKDLQGAPSCNGWTFWHFEDEGAVKALDAARQLY 377


>gi|296116693|ref|ZP_06835303.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976905|gb|EFG83673.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 364

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 200/352 (56%), Positives = 262/352 (74%), Gaps = 1/352 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D+I++G+ + +++ LPA S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+  +
Sbjct: 6   LDQILRGDCVEMMQTLPAGSIDCVFADPPYNLQLRGELRRPDDSIVDGVDDDWDKFADLQ 65

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL   RRVL+ +GT+WVIGSYHNIFRIG +LQ+L FWILND++WRKSNPMPN
Sbjct: 66  AYDRFTRAWLSEARRVLRKDGTIWVIGSYHNIFRIGAILQDLGFWILNDVIWRKSNPMPN 125

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWA+  P +  Y FNY A+KA N+DVQMRSDW +P+C+G ERLRN+ 
Sbjct: 126 FRGRRFTNAHETLIWAARGPDS-RYRFNYQAMKALNDDVQMRSDWYLPLCTGGERLRNEH 184

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKPE+LL R+L++ST   D++LDPF G+GT+ A+A++LRR FIGIE   DY +
Sbjct: 185 GLKLHPTQKPESLLHRVLIASTNVDDVVLDPFTGTGTTPAMARRLRRRFIGIERHPDYAE 244

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  R    +P+    +     +R  PR+ F  LVER ++ PG +L + Q  +SATV  D
Sbjct: 245 AAIGRARREKPVPLDSVLTTPARRECPRIPFGTLVERAILPPGTVLMDRQKRVSATVAPD 304

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           GTLISG   GSIH++GA ++ + +CNGW FW+FE+ G L  ++ LR  +R E
Sbjct: 305 GTLISGGHRGSIHKLGATLTNAPSCNGWTFWHFERAGVLQPLDILRNELRAE 356


>gi|90420098|ref|ZP_01228006.1| DNA modification methylase BabI [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335432|gb|EAS49182.1| DNA modification methylase BabI [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 379

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 228/354 (64%), Positives = 280/354 (79%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D+I KG+ +S +  LP  SVD+IFADPPYNLQL G L+RPD S VDAV D WD+F SF
Sbjct: 21  WLDRIHKGHCVSQMAALPENSVDVIFADPPYNLQLGGDLHRPDQSKVDAVDDHWDQFESF 80

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G M+Q+L FW+LND+VWRK+NPMP
Sbjct: 81  QAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAMMQDLGFWMLNDVVWRKTNPMP 140

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHET+IWAS    AKGYTFNYDA+K+AN+DVQMRSDWL PICSG ERL++ 
Sbjct: 141 NFRGRRFQNAHETMIWASRDANAKGYTFNYDAMKSANDDVQMRSDWLFPICSGGERLKDA 200

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G K HPTQKPEALL+R+L+SSTKPGD++LDPFFG+GT+GAVAK+L R ++GIE +  YI
Sbjct: 201 EGRKTHPTQKPEALLARVLLSSTKPGDVVLDPFFGTGTTGAVAKRLGRHYVGIEREDVYI 260

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  RIA+V+ L    L V  GKR EPR+ F  L+E GL+QPG  LT+A+   +A V A
Sbjct: 261 EAAEARIAAVEALDPTVLKVSAGKRAEPRIPFASLLEAGLVQPGTELTDAKRRWTARVRA 320

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+  G +  SIHR+GAKV G + CNGW FW+ +    L  I+TLR  +R ++
Sbjct: 321 DGTIAIGEDAASIHRIGAKVQGLDACNGWTFWHIDSKKGLTPIDTLRQTMRDQM 374


>gi|149185912|ref|ZP_01864227.1| modification methylase [Erythrobacter sp. SD-21]
 gi|148830473|gb|EDL48909.1| modification methylase [Erythrobacter sp. SD-21]
          Length = 380

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 196/347 (56%), Positives = 256/347 (73%), Gaps = 2/347 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ +  + ++P+ S+DL+FADPPYNLQL G L RPD S VDAVTD WDKF +F AY
Sbjct: 30  QILDGDCVEAMRQIPSASIDLVFADPPYNLQLGGDLNRPDGSHVDAVTDDWDKFDTFSAY 89

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL+  +R+LKP+G LWVIGSYHNI+R+G +LQ+L FWILNDIVWRKSNPMPNFR
Sbjct: 90  DTFTRDWLIEAKRILKPDGALWVIGSYHNIYRVGAILQDLGFWILNDIVWRKSNPMPNFR 149

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETL+W S   KA  Y FNY A+K  N+++QMRSDW++PIC+G+ERL+ + G 
Sbjct: 150 GTRFTNAHETLLWCSQGEKA-KYHFNYRAMKTLNDELQMRSDWVLPICNGAERLK-EGGH 207

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPEALL R+L+S+T+ GD++LDPFFG+GT+GAVAK+L R +IG E +  Y + A
Sbjct: 208 KVHPTQKPEALLYRVLLSTTERGDVVLDPFFGTGTTGAVAKRLGREWIGCEREGVYRNAA 267

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRI    PL    LT +   R+ P+VAF  LVE G I PG  L + +   +ATV ADG+
Sbjct: 268 LKRIEKELPLDESALTTMQAGRSAPKVAFGALVENGYIAPGTKLFDKKRRWTATVRADGS 327

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           L    + GSIH +G ++ G+ +CNGW FW++E  GE+  I+  R L 
Sbjct: 328 LACEKQTGSIHGLGKELQGAPSCNGWTFWHYENGGEVKPIDAARQLY 374


>gi|209886095|ref|YP_002289952.1| modification methylase CcrMI [Oligotropha carboxidovorans OM5]
 gi|209874291|gb|ACI94087.1| modification methylase CcrMI [Oligotropha carboxidovorans OM5]
          Length = 374

 Score =  414 bits (1065), Expect = e-114,   Method: Composition-based stats.
 Identities = 220/350 (62%), Positives = 272/350 (77%), Gaps = 1/350 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ ++ + KLPA SVDL+FADPPYNLQL G+L RPD S VDAV D WDKFSSF AY
Sbjct: 22  RIVIGDCVAEMTKLPANSVDLVFADPPYNLQLKGELKRPDESHVDAVNDDWDKFSSFAAY 81

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLACRR++KP  T+WVIGSYHNIFR+G ++Q+L FWILNDIVWRKSNPMPNFR
Sbjct: 82  DDFTRAWLLACRRIMKPTATIWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKSNPMPNFR 141

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+   +A  YTFNYDALKAANEDVQ RSDWLIP+C+G ERL+ KDG 
Sbjct: 142 GRRFTNAHETMIWAARD-EATKYTFNYDALKAANEDVQARSDWLIPLCTGEERLKGKDGR 200

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L RS+IG E  + Y + A
Sbjct: 201 KIHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRSYIGFERDRTYAEAA 260

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRIA+V+PL    L      R  PRV F  L+ERG+I PG  L +++   +A V ADG 
Sbjct: 261 EKRIAAVEPLPQATLAPFMTAREAPRVPFAELIERGMISPGAKLVDSKKKHAALVRADGA 320

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           ++ G ++GSIHR+GA   GSE CNGW+FW+ E    L  I+ LR  VR+E
Sbjct: 321 IMLGDKVGSIHRMGALAQGSEACNGWSFWHVETKKGLRLIDELRAEVRRE 370


>gi|258542065|ref|YP_003187498.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633143|dbj|BAH99118.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636200|dbj|BAI02169.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639255|dbj|BAI05217.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642309|dbj|BAI08264.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645364|dbj|BAI11312.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648419|dbj|BAI14360.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651472|dbj|BAI17406.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654463|dbj|BAI20390.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-12]
          Length = 367

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 201/356 (56%), Positives = 262/356 (73%), Gaps = 1/356 (0%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
              S+    D+I++G  +  +  LP+ SVD +FADPPYNLQL G+L RPD +LVD V D 
Sbjct: 5   KSASMELPLDQILRGECVETMRSLPSGSVDCVFADPPYNLQLRGELRRPDDTLVDGVDDD 64

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WDKFS  E YD FTRAWL   RRVL  +GT+WVIGSYHNI+RIG +LQ+L FWILNDIVW
Sbjct: 65  WDKFSDLEEYDRFTRAWLAEARRVLHKDGTIWVIGSYHNIYRIGAILQDLGFWILNDIVW 124

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RKSNPMPNFRGRRF NAHETLIWA+    +  Y FNY A+KA N+DVQMRSDW +P+C+G
Sbjct: 125 RKSNPMPNFRGRRFTNAHETLIWAARGQDS-RYRFNYQAMKALNDDVQMRSDWYLPLCTG 183

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +ERLRN+ G KLHPTQKPE+LL R+L++ST   D+ILDPF G+GT+ A+A++LRR FIGI
Sbjct: 184 NERLRNEHGLKLHPTQKPESLLHRVLLASTTVNDVILDPFSGTGTTAAMARRLRRHFIGI 243

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           E   DY++ A  R+A+  PL    +     KR  PR+ F  LVE+G+I  G ++ + +  
Sbjct: 244 ERHPDYVEAAMARVAAETPLEADAVQTTQDKREAPRIPFGSLVEQGVIAAGTVVCDKKRR 303

Query: 312 ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
           + ATV  DGTL++GT+ GSIH++GA+++ + +CNGW FW+FE+ GEL  ++ LR  
Sbjct: 304 VHATVSPDGTLVNGTKRGSIHKLGAQLTNAPSCNGWTFWHFERAGELLQLDVLRQE 359


>gi|27377620|ref|NP_769149.1| adenine DNA methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27350765|dbj|BAC47774.1| adenine DNA methyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 376

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 268/352 (76%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            +II G+ ++ + KL A SVDL+FADPPYNLQL G L RPD S VDAV D WDKF SF A
Sbjct: 22  HRIILGDCVAEMSKLQAGSVDLVFADPPYNLQLKGDLKRPDESHVDAVNDDWDKFDSFSA 81

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWLLA RR +KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPNF
Sbjct: 82  YDDFTRAWLLAARRAMKPSATIWVIGSYHNIFRVGAIMQDLGFWLLNDIVWRKTNPMPNF 141

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHET+IWA+   KAKGYTFNY+ALKAANEDVQ RSDWLIP+C+G ERL+  DG
Sbjct: 142 RGRRFTNAHETMIWAARDEKAKGYTFNYEALKAANEDVQARSDWLIPLCTGEERLKGADG 201

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L RS+IG E  + Y   
Sbjct: 202 KKVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRSYIGFERDKTYAKA 261

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RIA+V+PL    L      R  PRVAF+ L+ERG+I PG  L +A+  + A V ADG
Sbjct: 262 AEARIAAVEPLPEASLAPFMTAREAPRVAFSELIERGMIMPGTKLFDAKKKLGALVRADG 321

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            ++ G ++GSIHR+GA   G++ CNGW FW+ E    L  I+ LR  +R  +
Sbjct: 322 AIMFGDKVGSIHRIGAVAQGAQACNGWTFWHVETKKGLKLIDELRAEIRSGM 373


>gi|182677743|ref|YP_001831889.1| DNA methylase N-4/N-6 domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633626|gb|ACB94400.1| DNA methylase N-4/N-6 domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 395

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 215/351 (61%), Positives = 268/351 (76%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D+I+ G+ +  L +LPA+SVDL+FADPPYNLQL G++ RPD S VDAV D+WDKF SF 
Sbjct: 39  LDQILLGDCVEKLNRLPAESVDLVFADPPYNLQLEGKILRPDQSQVDAVDDAWDKFDSFA 98

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FT  WL A RRV+K + TL+VIGSYHNIFR+GT+LQ+  FWILNDI+WRKSNPMPN
Sbjct: 99  DYDRFTHEWLAAVRRVMKRHATLFVIGSYHNIFRVGTILQDQGFWILNDIIWRKSNPMPN 158

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHET+IWA+ S   K YTF+YDALKA NED Q+RSDWL+PICSG ERL+N+ 
Sbjct: 159 FRGRRFTNAHETMIWAAKSADVKNYTFHYDALKAGNEDHQVRSDWLLPICSGGERLKNEA 218

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPE LLSRIL+++T PGD++LDPFFG+GT+GAVAKKL RSFIGIE +  Y  
Sbjct: 219 GRKTHPTQKPENLLSRILLATTNPGDVVLDPFFGTGTTGAVAKKLGRSFIGIEREAGYAA 278

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RIA++ PL +  +     KRTEPR+ F  L+E GL+  G+ LT+ +G   A V AD
Sbjct: 279 AAKARIAAIDPLPSEAIASFPNKRTEPRIPFMTLIESGLLAAGETLTDEKGRHEAVVRAD 338

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
           GTL  G  +GSIH++GA V G   CNGW FW+F++ G+ H ++ LRI +R+
Sbjct: 339 GTLAVGPIIGSIHKIGALVQGLPACNGWTFWHFQRDGQKHPLDRLRIQLRE 389


>gi|254504291|ref|ZP_05116442.1| DNA methylase domain protein [Labrenzia alexandrii DFL-11]
 gi|222440362|gb|EEE47041.1| DNA methylase domain protein [Labrenzia alexandrii DFL-11]
          Length = 346

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 214/345 (62%), Positives = 272/345 (78%), Gaps = 1/345 (0%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           ++ LEKLP++SVDL+FADPPYNLQL G L+RPD S VDA  D WD+F SFEAYDAFTRAW
Sbjct: 1   MAALEKLPSRSVDLVFADPPYNLQLGGDLHRPDQSKVDACDDHWDQFESFEAYDAFTRAW 60

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           LLA RRV+K +G+L+VIGSYHNIFR+G +LQ+L FWI+NDIVW KSNPMPNFRG+RF NA
Sbjct: 61  LLAARRVMKTDGSLYVIGSYHNIFRVGAILQDLGFWIMNDIVWLKSNPMPNFRGKRFTNA 120

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           HET+IWA+ S  AK  TFNYDALK  NED+QMRSDW +P+C+G+ERL+ KDG+K+HPTQK
Sbjct: 121 HETMIWATKSKDAKP-TFNYDALKTFNEDLQMRSDWHLPLCTGAERLKGKDGQKVHPTQK 179

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           PEALL R+L +S+KPGD++LDPFFG+GT+GAVA+KL R+++G+E +QDYID AT RIA++
Sbjct: 180 PEALLYRVLTASSKPGDVVLDPFFGTGTTGAVARKLGRNYVGVEREQDYIDAATARIAAI 239

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
           QP     L +  GKR + R+ F  L+E G+++PG  LT ++G   A V ADG+L SG   
Sbjct: 240 QPGDEKALEMQQGKRAQKRIPFGTLLENGVLEPGTELTCSKGKHLAIVRADGSLKSGDHT 299

Query: 329 GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GSIH+VGA V G E CNGW FW+ ++  +   I+ LR  +R  L 
Sbjct: 300 GSIHKVGALVQGQEACNGWTFWHTKEGSKKSPIDELRKEIRSRLQ 344


>gi|86748198|ref|YP_484694.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris HaA2]
 gi|86571226|gb|ABD05783.1| DNA adenine methylase CcrM [Rhodopseudomonas palustris HaA2]
          Length = 377

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 219/353 (62%), Positives = 274/353 (77%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +++II G+ ++ + KLPAKSVDL+FADPPYNLQL G L RPD S VDAV D WDKFSSF 
Sbjct: 22  ENRIIVGDCVAEMSKLPAKSVDLVFADPPYNLQLKGALKRPDESQVDAVDDDWDKFSSFA 81

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWLLA RR++KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPN
Sbjct: 82  AYDDFTRAWLLAARRIMKPSATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKTNPMPN 141

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHET+IWA+    AKGYTFNYDALKA+NEDVQ RSDWLIP+C+G ERL+ KD
Sbjct: 142 FRGRRFTNAHETMIWAARDENAKGYTFNYDALKASNEDVQARSDWLIPLCTGDERLKGKD 201

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+LRR++IG E  + Y D
Sbjct: 202 GKKVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLRRNYIGFERDRTYAD 261

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI +V+PL    L      R  PRVAF+ L+ERG+I PG  L +++    A V AD
Sbjct: 262 AARARIDAVEPLPEDTLKPFLTARDAPRVAFSELIERGMISPGAKLVDSKKRHGALVRAD 321

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           G ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  VR  +
Sbjct: 322 GAIMLGDKVGSIHRIGAMAQGSEACNGWTFWHVETTKGLRLIDELRAEVRSAM 374


>gi|294085234|ref|YP_003551994.1| DNA methylase N-4/N-6 [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664809|gb|ADE39910.1| DNA methylase N-4/N-6 [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 363

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 194/356 (54%), Positives = 267/356 (75%), Gaps = 3/356 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+ +++G+ +  L+ L   SVDL+FADPPYNLQL+  L RPD S V +V DSWD+F SF 
Sbjct: 3   KNIVLQGDCVETLKTLAKNSVDLVFADPPYNLQLSELLVRPDQSSVVSVDDSWDQFDSFA 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FT AW+   RRVLKPNG +WVIGSYHNIFR+G ++Q+L FW+LND++WRK+NPMPN
Sbjct: 63  AYDEFTLAWMREVRRVLKPNGAIWVIGSYHNIFRVGKIMQDLGFWVLNDVIWRKTNPMPN 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHET+IWA+ S KA  +TFNY+A+KA N+DVQMRSDW +P+C+G ERL+ ++
Sbjct: 123 FRGRRFTNAHETMIWAAKSQKA-KHTFNYEAMKALNDDVQMRSDWELPLCTGHERLK-EN 180

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G++ HPTQKPE+LL+R++++STK  D+ILDPFFG+GT+GAVA++L R+FIGIE   DY+ 
Sbjct: 181 GKRAHPTQKPESLLARVILASTKRDDVILDPFFGTGTTGAVARRLNRNFIGIEQNPDYVK 240

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A  RI  V P+ + +L     KR  P++ F  L+ERG++QPG  L +A+   SA V AD
Sbjct: 241 LARDRIDQVTPIASPDLLASEQKRALPKIPFGTLIERGILQPGDRLFDAKKRFSAQVRAD 300

Query: 320 GTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           G+L++ ++  GSIH +GA++    +CNGW FW+ E+ G+   I+  R  +R    N
Sbjct: 301 GSLVTDSKESGSIHSLGAQLQSLPSCNGWIFWHVERDGKPVLIDRFREDIRASNQN 356


>gi|91975680|ref|YP_568339.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB5]
 gi|91682136|gb|ABE38438.1| DNA adenine methylase CcrM [Rhodopseudomonas palustris BisB5]
          Length = 377

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 216/353 (61%), Positives = 275/353 (77%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +++II G+ ++ + KLPA+SVDL+FADPPYNLQL G+L RPD S VDAV + WDKFSSF 
Sbjct: 22  ENRIIVGDCVAEMSKLPARSVDLVFADPPYNLQLKGELKRPDESHVDAVDNDWDKFSSFA 81

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWLLA RR++KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPN
Sbjct: 82  AYDDFTRAWLLAARRIMKPSATIWVIGSYHNIFRVGAIMQDLGFWLLNDIVWRKTNPMPN 141

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHET+IWA+    AKGYTFNYDALKAANEDVQ RSDWLIP+C+G ERL+  D
Sbjct: 142 FRGRRFTNAHETMIWAARDENAKGYTFNYDALKAANEDVQARSDWLIPLCTGEERLKGSD 201

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+LRR++IG E  +DY  
Sbjct: 202 GKKVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLRRNYIGFERDRDYAT 261

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RIA+++PL    L      R+ PRVAF  L+ERG+I PG  L +++    A V AD
Sbjct: 262 AAEARIAAIEPLPEATLAPFMTARSAPRVAFAELIERGIISPGTKLVDSKKRHGALVRAD 321

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           G ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  +R  +
Sbjct: 322 GAIMLGDKVGSIHRIGAVAQGSEACNGWTFWHVETSKGLRLIDELRAEIRSAM 374


>gi|103486455|ref|YP_616016.1| DNA methylase N-4/N-6 [Sphingopyxis alaskensis RB2256]
 gi|98976532|gb|ABF52683.1| DNA methylase N-4/N-6 [Sphingopyxis alaskensis RB2256]
          Length = 379

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 203/348 (58%), Positives = 250/348 (71%), Gaps = 3/348 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D I++G+ ++++  LPA SVD+IFADPPYNLQL G L RPD S VDAV D WDKF S  
Sbjct: 26  LDSILQGDCVAMMRGLPAASVDMIFADPPYNLQLGGDLLRPDGSQVDAVDDDWDKFDSLA 85

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FT AWL   RR+LKP G++WVIGSYHNIFR+G  LQ+  +WILNDIVWRK+NPMPN
Sbjct: 86  TYDRFTHAWLKEARRILKPGGSIWVIGSYHNIFRVGAALQDQGYWILNDIVWRKANPMPN 145

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIWAS   KA  YTFNY A+K  N+++QMRSDWLIPIC G ERL+ K 
Sbjct: 146 FKGTRFTNAHETLIWASMGEKA-RYTFNYRAMKTLNDELQMRSDWLIPICGGPERLK-KG 203

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPEALL RIL++ + PGD+ILDPFFG+GT+GAVAK+L R +IGIE + DYI 
Sbjct: 204 GHKVHPTQKPEALLYRILLACSNPGDVILDPFFGTGTTGAVAKRLGRHYIGIEREDDYIA 263

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A +RI    PL    +  +   +   RVAF  LVE GLI PG +LT+A+    A V  D
Sbjct: 264 AAKERIELALPLDESAVKTMMAPKAATRVAFGTLVECGLIAPGTVLTDAKRRWKAKVRVD 323

Query: 320 GTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRI 366
           G+L    +  GSIH+VGA V G+ +CNGW FW+ +   EL  I+ +R 
Sbjct: 324 GSLDCEGQAPGSIHKVGAGVQGAPSCNGWTFWHVDTGQELRVIDAVRQ 371


>gi|329114180|ref|ZP_08242942.1| Modification methylase SmeI [Acetobacter pomorum DM001]
 gi|326696256|gb|EGE47935.1| Modification methylase SmeI [Acetobacter pomorum DM001]
          Length = 367

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 202/356 (56%), Positives = 262/356 (73%), Gaps = 1/356 (0%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
              S+    D+I++G  +  +  LP+ SVD +FADPPYNLQL G+L RPD +LVD V D 
Sbjct: 5   KSASMELPIDQILRGECVETMRSLPSGSVDCVFADPPYNLQLRGELRRPDDTLVDGVDDD 64

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WDKFS  E YD FTRAWL   RRVL  +GT+WVIGSYHNI+RIG +LQ+L FWILNDIVW
Sbjct: 65  WDKFSDLEEYDRFTRAWLAEARRVLHKDGTIWVIGSYHNIYRIGAILQDLGFWILNDIVW 124

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RKSNPMPNFRGRRF NAHETLIWA+    +  Y FNY A+KA N+DVQMRSDW +P+C+G
Sbjct: 125 RKSNPMPNFRGRRFTNAHETLIWAARGQDS-RYRFNYQAMKALNDDVQMRSDWYLPLCTG 183

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +ERLRN+ G KLHPTQKPE+LL R+L++ST   D+ILDPF G+GT+ A+A++LRR FIGI
Sbjct: 184 NERLRNEHGLKLHPTQKPESLLHRVLLASTTVNDVILDPFSGTGTTAAMARRLRRHFIGI 243

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           E   DY++ A  R+A+  PL    +     KR  PR+ F  LVE+G+I  G ++ + +  
Sbjct: 244 ERHPDYVEAAMARVAAETPLEADAVQTTQDKREAPRIPFGSLVEQGVIAAGTVVCDKKRR 303

Query: 312 ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
           + ATV  DGTL++GT+ GSIH++GA+++ + +CNGW FWYFE+ GEL  ++ LR  
Sbjct: 304 VHATVSPDGTLVNGTKRGSIHKLGAQLTNAPSCNGWTFWYFERAGELLQLDVLRQE 359


>gi|90425838|ref|YP_534208.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB18]
 gi|90107852|gb|ABD89889.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB18]
          Length = 377

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 215/351 (61%), Positives = 270/351 (76%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ ++ + K+ A SVDL+FADPPYNLQL G L RPD S VDAVTD WDKF SF AY
Sbjct: 24  QIVIGDCVAEMSKMAAGSVDLVFADPPYNLQLKGDLKRPDESHVDAVTDDWDKFDSFAAY 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLACRR++KP  TLWVIGSYHNIFR+GT++Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 84  DNFTRAWLLACRRIMKPTATLWVIGSYHNIFRVGTIMQDLGFWVLNDIVWRKTNPMPNFR 143

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    +KGYTFNY+ALKAANEDVQ RSDWLIP+C+G ERL+  DG+
Sbjct: 144 GRRFTNAHETMIWAARDENSKGYTFNYEALKAANEDVQARSDWLIPLCTGEERLKGADGK 203

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD++LDPF G+GT+GAVAK+L R +IG E   DY   A
Sbjct: 204 KIHPTQKPEGLLARVLLSSSKPGDLVLDPFNGTGTTGAVAKRLGRHYIGFERDHDYAAAA 263

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RI +++PL +  L      R+ PRVAF+ L+ERG+I PG  L +++    A V ADG 
Sbjct: 264 RARIDAIEPLPDATLAPFMTARSAPRVAFSELIERGIISPGTKLVDSKKRHGALVRADGA 323

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  +R E+
Sbjct: 324 IMLGDKVGSIHRMGAVAQGSEACNGWTFWHVETHKGLRLIDELRAEIRSEM 374


>gi|300024384|ref|YP_003756995.1| DNA methylase N-4/N-6 domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526205|gb|ADJ24674.1| DNA methylase N-4/N-6 domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 375

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 200/350 (57%), Positives = 259/350 (74%), Gaps = 1/350 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ I+ L+K+   SVDL+FADPPYNLQL G L RP+++ VD V D+WDKF  F  Y
Sbjct: 14  RILVGDCINELKKIATASVDLVFADPPYNLQLAGDLLRPNNTKVDGVDDAWDKFQDFAEY 73

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D+F RAWL  CRRVLKP+G +WVIGSYHNIFR+G  +Q+L FWI ND++WRK NPMPNFR
Sbjct: 74  DSFCRAWLKECRRVLKPDGAIWVIGSYHNIFRLGVAIQDLGFWIQNDVIWRKVNPMPNFR 133

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G+RF NAHET+IWA    K++  TFNY++LKA+N+D+QMRSDWL PICSG ERL++  G 
Sbjct: 134 GKRFTNAHETMIWAGRDRKSRV-TFNYESLKASNDDLQMRSDWLFPICSGPERLKDDGGR 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL RI+++STKPGD +LDPFFG+GT+GAVAK+L R FIGIE   DY   A
Sbjct: 193 KAHPTQKPEALLHRIMIASTKPGDTVLDPFFGTGTTGAVAKRLGRKFIGIERDTDYARAA 252

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            +RIA V+PL    +  +  KR+EPR+ F  ++E G+++PGQ L   +  + A V ADGT
Sbjct: 253 DERIAKVRPLDLDAIEAIPSKRSEPRIPFGQILELGILEPGQKLFGPRREVRAEVRADGT 312

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           L    +  SIHR+GA V G   CNGW +W+FE  G+L  I+ LR   +++
Sbjct: 313 LACAGQQASIHRLGAMVQGKAACNGWTYWHFEAEGKLRPIDVLRGEAKRQ 362


>gi|306842226|ref|ZP_07474890.1| Modification methylase HinfI [Brucella sp. BO2]
 gi|306287668|gb|EFM59112.1| Modification methylase HinfI [Brucella sp. BO2]
          Length = 338

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 230/332 (69%), Positives = 283/332 (85%)

Query: 41  DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
           D+IFADPPYNLQL G L+RPD S+V AV D WD+F SF+AYDAFTRAWLLACRRVLKPNG
Sbjct: 2   DVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESFQAYDAFTRAWLLACRRVLKPNG 61

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           T+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMPNFRGRRFQNAHETLIWAS   K
Sbjct: 62  TIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMPNFRGRRFQNAHETLIWASRDQK 121

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
            KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL++++G+K+HPTQKPEALL+RI+++S
Sbjct: 122 GKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDENGDKVHPTQKPEALLARIMMAS 181

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           +KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YID AT RI +V+PLG  ELTV+T
Sbjct: 182 SKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYIDAATARINAVEPLGKAELTVMT 241

Query: 281 GKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSG 340
           GKR EPRVAF  ++E GL++PG +L + +   +A V ADGTL +  E GSIHR+GA+V G
Sbjct: 242 GKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRADGTLTANGEAGSIHRIGARVQG 301

Query: 341 SETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 302 FDACNGWTFWHFEENGVLKPIDALRKIIREQM 333


>gi|92118691|ref|YP_578420.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
 gi|91801585|gb|ABE63960.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
          Length = 376

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 215/351 (61%), Positives = 271/351 (77%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ ++ + KLP+ S DL+FADPPYNLQL G L RPD S VDAV D WDKFSSF AY
Sbjct: 23  RIIVGDCVAAMSKLPSGSADLVFADPPYNLQLKGDLKRPDESHVDAVNDDWDKFSSFAAY 82

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLACRRV+KP  T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 83  DDFTRAWLLACRRVMKPTATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKTNPMPNFR 142

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNY+ALKA+NEDVQ RSDWLIP+C+G+ERL++KDG 
Sbjct: 143 GRRFTNAHETMIWAARDENAKGYTFNYEALKASNEDVQARSDWLIPLCTGNERLKDKDGR 202

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS++PGD+I+DPF G+GT+GAVAK+L R++IG E  Q Y   A
Sbjct: 203 KVHPTQKPEGLLARVLLSSSRPGDLIIDPFNGTGTTGAVAKRLGRNYIGFERDQTYAAAA 262

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRIA+++PL    +      R  PRVAF+ L+ERG+I PG  L +A+    A V ADG 
Sbjct: 263 EKRIAAIEPLPEATIAPFMTAREAPRVAFSELIERGMISPGAKLVDAKKRHGALVRADGA 322

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ G ++GSIHR+GA   G+  CNGW FW+ E    L  I+ LR  +R E+
Sbjct: 323 IMLGDKVGSIHRIGAVAQGAGACNGWTFWHIETSKGLRLIDELRAEIRSEM 373


>gi|71082817|ref|YP_265536.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71061930|gb|AAZ20933.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 356

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 190/354 (53%), Positives = 255/354 (72%), Gaps = 2/354 (0%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
             +K+KII G+S+  L+K+P+++ DL+FADPPYNLQL   L RPD S V+AV D WD F 
Sbjct: 3   NNFKNKIINGDSLEELKKIPSETFDLVFADPPYNLQLKNSLTRPDRSKVNAVNDKWDHFE 62

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           SF+ YD FT AWL  C+R+LK +G +WVIGSYHNIFR+GT +QNL FWILND++W K+NP
Sbjct: 63  SFKKYDEFTVAWLSECKRILKKDGAIWVIGSYHNIFRVGTAIQNLGFWILNDVIWNKNNP 122

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           MPNFRG RF NAHETLIWAS S K+  YTFNY +LK  N+D+QMRSDW +PIC+G+ERL+
Sbjct: 123 MPNFRGTRFTNAHETLIWASKSEKS-KYTFNYQSLKCLNDDLQMRSDWNLPICNGAERLK 181

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K+G+K+H TQKPE+LL R+L++S+  GD+ILDPF GSGT+  VAKKL R + GIE ++ 
Sbjct: 182 -KNGKKVHSTQKPESLLHRVLLASSNKGDMILDPFLGSGTTATVAKKLGRKYYGIEKEKV 240

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
           Y   A +R+ + +PL +  L  L   R++PR+ F  LVE G+I+PG  + + +  I A +
Sbjct: 241 YFKAAEERLKNTKPLEDNFLDTLKNNRSKPRIPFGSLVELGIIKPGTSIFDQKKKIVAKI 300

Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
            ADG++      GSIH+V A + GSE+CNGW +W+    G    I+ LR  +  
Sbjct: 301 MADGSIKHNQAEGSIHKVAATILGSESCNGWTYWHCTVNGVSVPIDNLRQRLIS 354


>gi|91762760|ref|ZP_01264725.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718562|gb|EAS85212.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 356

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 189/354 (53%), Positives = 254/354 (71%), Gaps = 2/354 (0%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
             +K+KII G+S+  L+K+P+++ DL+FADPPYNLQL   L RPD S V AV D WD+F 
Sbjct: 3   NNFKNKIINGDSLEELKKIPSETFDLVFADPPYNLQLKNSLTRPDRSKVSAVNDKWDQFE 62

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           SF+ YD FT AWL  CRR+LK +G +WVIGSYHNIFR+GT +QNL FWILND++W K+NP
Sbjct: 63  SFKKYDDFTVAWLSECRRILKKDGAIWVIGSYHNIFRVGTAIQNLGFWILNDVIWNKNNP 122

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           MPNFRG RF NAHETLIWAS S K+  YTFNY +LK  N+D+QMRS+W +PIC+G+ERL+
Sbjct: 123 MPNFRGTRFTNAHETLIWASKSEKS-KYTFNYQSLKCLNDDLQMRSNWNLPICNGAERLK 181

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K+G+K+H TQKPE+LL R+L++S+   D+ILDPF GSGT+  VAKKL R + GIE ++ 
Sbjct: 182 -KNGKKVHSTQKPESLLHRVLLASSNKDDLILDPFLGSGTTATVAKKLGRKYYGIEKEKT 240

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
           Y   A +R+ + +PL +  L  L   R++PR+ F  LVE G+I+PG  + + +  I A +
Sbjct: 241 YFKAAEERLKNTKPLEDNFLDTLKNNRSKPRIPFGSLVELGIIKPGTSIFDQKKKIVAKI 300

Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
            ADG++      GSIH+V A + GSE+CNGW +W+    G    I+ LR  +  
Sbjct: 301 MADGSIKHNQAEGSIHKVAATILGSESCNGWTYWHCTVNGVSVPIDNLRQRLIS 354


>gi|158422077|ref|YP_001523369.1| putative adenine DNA methyltransferase [Azorhizobium caulinodans
           ORS 571]
 gi|158328966|dbj|BAF86451.1| putative adenine DNA methyltransferase [Azorhizobium caulinodans
           ORS 571]
          Length = 395

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 216/356 (60%), Positives = 272/356 (76%), Gaps = 4/356 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I+ G+ +  L  LP  SVD++FADPPYNLQL G+L RPD S VDAV D+WD+F SFEA
Sbjct: 34  DRILIGDCVEQLASLPPHSVDMVFADPPYNLQLQGELKRPDDSRVDAVDDAWDQFESFEA 93

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWLLA +RV+KPN T+WVIGSYHNIFR+G ++Q+L FWILND+VWRKSNPMPNF
Sbjct: 94  YDAFTRAWLLAVKRVMKPNATIWVIGSYHNIFRVGALMQDLGFWILNDVVWRKSNPMPNF 153

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHET+IWA+  P AKGY FNY+ALK  NEDVQ+RSDWL+PIC+G ERL++  G
Sbjct: 154 RGRRFTNAHETMIWAARDPGAKGYQFNYEALKGGNEDVQVRSDWLLPICTGGERLKDAQG 213

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPEALL+R+++S++KPGD++LDPF GSGTS AVAK+LRR F+G+E  + Y   
Sbjct: 214 RKLHPTQKPEALLARVMLSASKPGDVVLDPFLGSGTSAAVAKRLRRHFVGVERDETYAAA 273

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +++PL    L      R  PRVAF+ LV+ GL+ PG  LT+A+G++ A V ADG
Sbjct: 274 AAARIDAIEPLPEAALVAPPSAREAPRVAFSALVDSGLVTPGLELTDAKGHVRAVVRADG 333

Query: 321 TLISGT----ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           T+         +GSIHR+GA   G+E CNGW FW+ E+ G  H I+ LR  +R E+
Sbjct: 334 TIALVNAATLAVGSIHRMGALAQGAEACNGWTFWHVEQEGRRHPIDVLRARLRAEM 389


>gi|75676787|ref|YP_319208.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
 gi|74421657|gb|ABA05856.1| DNA adenine methylase CcrM [Nitrobacter winogradskyi Nb-255]
          Length = 376

 Score =  408 bits (1048), Expect = e-112,   Method: Composition-based stats.
 Identities = 215/353 (60%), Positives = 271/353 (76%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ ++ + KL A S DLIFADPPYNLQL G L RPD S VDAV   WDKFSSF AY
Sbjct: 23  RIIIGDCVAGMSKLQAGSADLIFADPPYNLQLKGDLKRPDESHVDAVNSDWDKFSSFSAY 82

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLACRRV+KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 83  DEFTRAWLLACRRVMKPSATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKTNPMPNFR 142

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNY+ALKAANEDVQ RSDWLIP+C+G+ERL+++DG 
Sbjct: 143 GRRFTNAHETMIWAARDENAKGYTFNYEALKAANEDVQARSDWLIPLCTGNERLKDEDGR 202

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L R++IG E  + Y   A
Sbjct: 203 KVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRNYIGFERDRTYAAAA 262

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRIA+V+PL    L      R  PRVAF+ L+ERG+I PG  L +A+    A V ADG 
Sbjct: 263 EKRIAAVEPLPEATLAPFMTAREAPRVAFSELIERGMISPGAKLVDAKKRHGALVRADGA 322

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           ++ G ++GSIHR+GA   G+  CNGW FW+ E    L  I+ LR  +R ++ +
Sbjct: 323 IMLGDKVGSIHRIGAVAQGAGACNGWTFWHIETSKGLKLIDELRAEIRSQMAS 375


>gi|85714254|ref|ZP_01045242.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
 gi|85698701|gb|EAQ36570.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
          Length = 376

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 220/351 (62%), Positives = 271/351 (77%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ ++ + KLPA S DLIFADPPYNLQL G+L RPD S VDAV   WDKFSSF AY
Sbjct: 23  RIIIGDCVAGMSKLPAGSADLIFADPPYNLQLKGELKRPDESHVDAVNSEWDKFSSFSAY 82

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLACRRV+KP+ T+WVIGSYHNIFR+G M+Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 83  DDFTRAWLLACRRVMKPSATIWVIGSYHNIFRVGAMMQDLGFWVLNDIVWRKTNPMPNFR 142

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNY+ALKAANEDVQ RSDWLIP+C+G+ERL+ KDG 
Sbjct: 143 GRRFTNAHETMIWAARDENAKGYTFNYEALKAANEDVQARSDWLIPLCTGNERLKGKDGR 202

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L RS+IG E  Q Y   A
Sbjct: 203 KIHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRSYIGFERDQAYAAAA 262

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRIA+V+PL    L      R  PRVAF+ L+ERG+I PG  L +A+    A V ADG 
Sbjct: 263 EKRIAAVEPLPEATLAPFMTAREAPRVAFSELIERGMISPGAKLVDAKKRHGALVRADGA 322

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ G ++GSIHR+GA   G+  CNGW FW+ E    L  I+ LR  +R ++
Sbjct: 323 IMLGDKVGSIHRIGAVAQGASACNGWTFWHIETSKGLRLIDELRAEIRSQM 373


>gi|114328523|ref|YP_745680.1| adenine-specific methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316697|gb|ABI62757.1| adenine-specific methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 385

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 202/345 (58%), Positives = 260/345 (75%), Gaps = 1/345 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+++ G+ + V++ LP  SVD IFADPPYNLQL G+L RPD S+VD V D WD+F+ + A
Sbjct: 19  DQVLLGDCVQVMQMLPTGSVDCIFADPPYNLQLRGELRRPDESIVDGVDDDWDRFTDYAA 78

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAF+RAWL  CRR+L+ +GT+WVIG+YHNIFR+GT+LQ+L FWILND+VWRK+NPMPNF
Sbjct: 79  YDAFSRAWLTECRRLLRKDGTIWVIGAYHNIFRLGTILQDLGFWILNDVVWRKANPMPNF 138

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+    +  + FNY A+K  N+DVQMRSDW +P+C+GSER+RN  G
Sbjct: 139 RGRRFTNAHETLIWAARGQDS-RHRFNYQAMKTLNDDVQMRSDWFLPLCTGSERMRNDHG 197

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+L+SST PGD++LDPF G+GTS AVAK+L+RSFIGIE    Y + 
Sbjct: 198 LKLHPTQKPESLLYRVLLSSTVPGDVVLDPFLGTGTSAAVAKRLQRSFIGIERHPAYAEA 257

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R+ SV+P     L ++  +R + RV F  LVE+GL+  G IL +    +SA V ADG
Sbjct: 258 AIGRLRSVEPAPLDNLNIMPSRREQKRVPFGSLVEQGLLPMGSILMDRLRRVSALVQADG 317

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           ++ SG   GSIH+VGA V  + +CNGW FW+FE  GE   I+ LR
Sbjct: 318 SIASGAHRGSIHQVGAAVQNAPSCNGWTFWFFELRGEWVPIDVLR 362


>gi|217977761|ref|YP_002361908.1| DNA methylase N-4/N-6 domain protein [Methylocella silvestris BL2]
 gi|217503137|gb|ACK50546.1| DNA methylase N-4/N-6 domain protein [Methylocella silvestris BL2]
          Length = 379

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 208/353 (58%), Positives = 259/353 (73%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++I+ G+ +  L +LPA SVD +FADPPYNLQL   L RPD SLVDAV D WDKF SF 
Sbjct: 22  LNEILIGDCLEQLARLPAASVDAVFADPPYNLQLESTLSRPDQSLVDAVNDDWDKFDSFS 81

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD+F+R+WL A RRV+KP  TL+VIGSYHNIFR+G+ LQ+  FWILNDIVWRK+NPMPN
Sbjct: 82  HYDSFSRSWLKAVRRVMKPEATLFVIGSYHNIFRVGSTLQDEGFWILNDIVWRKANPMPN 141

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWA+    AK Y FNY+ LKA NED Q+RSDWL PIC+G+ERL+  D
Sbjct: 142 FRGRRFTNAHETLIWAAKDSAAKNYRFNYELLKAGNEDCQLRSDWLFPICTGAERLKGSD 201

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPEALL+RIL+++T PGD++LDPFFGSGT+GA AK+L R F+GIE  + Y  
Sbjct: 202 GRKTHPTQKPEALLARILIAATNPGDVVLDPFFGSGTTGAAAKRLGRHFVGIERDKTYAA 261

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI +V+ L    + +   KRTEPRVAF+ +VE GLI PG  L + +    ATV AD
Sbjct: 262 AARARIDAVETLPEAAIALTPSKRTEPRVAFSAIVEAGLIAPGDSLVDDKQRHRATVRAD 321

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           G +  G  +GSIH++GA   G   CNGW +W+F + G+L  I+ LR + R +L
Sbjct: 322 GAITLGPVVGSIHKIGALAQGLPACNGWTYWHFAQGGKLQPIDALRTVARGKL 374


>gi|241761782|ref|ZP_04759868.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373696|gb|EER63256.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 382

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 202/372 (54%), Positives = 264/372 (70%), Gaps = 2/372 (0%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS+++     E  +S     + I+ GN I +L+ LP  SVDLIFADPPYNLQL+G+L+RP
Sbjct: 10  MSEEDIGGDTELSDSPTLPLNSILAGNCIEILKTLPDNSVDLIFADPPYNLQLSGELFRP 69

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           + S VDAV ++WDKF +F AYD FT  WL    RVLK +GT+WVIGSYHNIFR+GT LQ+
Sbjct: 70  EGSRVDAVNNAWDKFDTFAAYDHFTCLWLKEAHRVLKEDGTIWVIGSYHNIFRVGTALQD 129

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
             FWILNDI+WRKSNPMPNF+GRRF NAHETLIWAS S K+  Y FNY +LK  N+D+QM
Sbjct: 130 QGFWILNDIIWRKSNPMPNFKGRRFTNAHETLIWASKSDKS-RYVFNYASLKTFNDDLQM 188

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL+PICSG+ERL+ ++G+K+HPTQKPEALL RI+++S++P D+ILDPFFG+GT+G +
Sbjct: 189 RSDWLLPICSGNERLKGENGQKIHPTQKPEALLYRIILASSRPDDVILDPFFGTGTTGVI 248

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           A+ LRR +IGIE    YI  A  RI   +      +   + KR +PRV F  L+E G I+
Sbjct: 249 ARHLRRHWIGIEQDPTYIKAAQARIDKAEVFDEALMGQASNKRKQPRVTFGCLMENGFIR 308

Query: 301 PGQILTNAQGNISATVCADGTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELH 359
           PG IL +++    A V  DG L S     GSIH++GA++  + +CNGW FW+FE+   L 
Sbjct: 309 PGHILYDSRRRFKAVVNVDGALQSADGRSGSIHKLGAQLQQAVSCNGWIFWHFEENNILL 368

Query: 360 SINTLRILVRKE 371
            ++ LR     E
Sbjct: 369 PLDILRQRYLAE 380


>gi|254456346|ref|ZP_05069775.1| site-specific DNA methyltransferase [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083348|gb|EDZ60774.1| site-specific DNA methyltransferase [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 356

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 191/353 (54%), Positives = 259/353 (73%), Gaps = 2/353 (0%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++K+KII G+S+  L+K+P+++ DL+FADPPYNLQL  +L RPD S V AV D WD+F +
Sbjct: 4   DFKNKIINGDSLEELKKIPSETFDLVFADPPYNLQLKNKLTRPDRSKVSAVDDKWDQFEN 63

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F+ YD FT AWL  C+R+LK NG +WVIGSYHNIFR+GT +QNL FWILND++W K+NPM
Sbjct: 64  FKKYDEFTYAWLTECKRILKKNGAIWVIGSYHNIFRVGTTIQNLGFWILNDVIWNKNNPM 123

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRG RF NAHETLIWAS S K+  YTFNY +LK  N+D+QMRS+W +PIC+G+ERL+ 
Sbjct: 124 PNFRGTRFTNAHETLIWASKSEKS-KYTFNYQSLKCLNDDLQMRSNWNLPICNGTERLK- 181

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K+G+K+H TQKPEALL RIL++S+   D+ILDPF GSGT+  VAKKL R+F GIE ++ Y
Sbjct: 182 KNGKKVHSTQKPEALLHRILLASSNKDDMILDPFLGSGTTATVAKKLGRNFYGIEKEKTY 241

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
              A KRI + +P  +  L  L   R++PR+ F  LVE G+I+PG  + + +  I+A + 
Sbjct: 242 FKAAEKRIKNAKPFEDNFLDTLKNNRSKPRIPFGSLVELGIIKPGTNIFDNKKKITARIM 301

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
           ADG++      GSIH+V A + G+E+CNGW +W+ +  G  + I+ LR  +  
Sbjct: 302 ADGSIKHNQAEGSIHKVAATILGAESCNGWTYWHCDINGRTYPIDYLRQRLIS 354


>gi|288962308|ref|YP_003452603.1| adenine-specific DNA-methyltransferase [Azospirillum sp. B510]
 gi|288914574|dbj|BAI76059.1| adenine-specific DNA-methyltransferase [Azospirillum sp. B510]
          Length = 360

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 203/358 (56%), Positives = 267/358 (74%), Gaps = 5/358 (1%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +++I+ G+ I+++  LP  SVDL+FADPPYNLQL G+L RP+H+ V  V D WDKF  FE
Sbjct: 4   ENRILVGDCIALMNDLPPASVDLVFADPPYNLQLGGELLRPNHTRVAGVDDEWDKFDDFE 63

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTR W+ A RR+LKP G+LWVIGSYHNIFR+G  LQNL FWILNDIVWRK+NPMPN
Sbjct: 64  AYDRFTRDWMTAARRILKPEGSLWVIGSYHNIFRVGATLQNLGFWILNDIVWRKTNPMPN 123

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG RF NAHET+IWA+   K   Y FNYDA+K  NED+QMRSDWL+PICSG ERLR+++
Sbjct: 124 FRGTRFANAHETMIWAA-LDKDARYRFNYDAMKNLNEDLQMRSDWLLPICSGGERLRDEE 182

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL R+++SS++PGD++LDPFFG+GT+GAVAK+L R +IG+E    Y+ 
Sbjct: 183 GKKTHPTQKPESLLYRVILSSSRPGDVVLDPFFGTGTTGAVAKRLGRKWIGLERDDTYVK 242

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI +V+   +  +     KR+ PR+ F  +VERGL++PG  L + +  ++A V AD
Sbjct: 243 AAQARIDAVEEAPDTAILDTPPKRSAPRIPFGWVVERGLLRPGSTLFDQRRRVAARVRAD 302

Query: 320 GTLIS----GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GTLI     G   GSIH+VGA ++G   CNGW FW++E+  +L  I+ LR  +R E++
Sbjct: 303 GTLIGSGPRGDHRGSIHQVGAAMAGLPACNGWTFWHYEEGEDLRPIDVLRERIRSEMH 360


>gi|260752543|ref|YP_003225436.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283856387|ref|YP_162740.2| DNA methylase N-4/N-6 domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|163881967|gb|ABY48039.1| cell cycle regulating DNA methyltransferase [Zymomonas mobilis
           subsp. mobilis]
 gi|258551906|gb|ACV74852.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283775386|gb|AAV89629.2| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 382

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 203/372 (54%), Positives = 265/372 (71%), Gaps = 2/372 (0%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS+++     E  +S     + I+ GN I +L+ LP  SVDLIFADPPYNLQL+G+L+RP
Sbjct: 10  MSEEDIGGDTELSDSPTLPLNSILAGNCIEILKTLPDNSVDLIFADPPYNLQLSGELFRP 69

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           + S VDAV ++WDKF +F AYD FTR WL    RVLK +GT+WVIGSYHNIFR+GT LQ+
Sbjct: 70  EGSRVDAVNNAWDKFDTFAAYDHFTRLWLKEAHRVLKEDGTIWVIGSYHNIFRVGTALQD 129

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
             FWILNDI+WRKSNPMPNF+GRRF NAHETLIWAS S K+  Y FNY +LK  N+D+QM
Sbjct: 130 QGFWILNDIIWRKSNPMPNFKGRRFTNAHETLIWASKSDKS-RYVFNYASLKTFNDDLQM 188

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL+PICSG+ERL+ ++G+K+HPTQKPEALL RI+++S++P D+ILDPFFG+GT+G +
Sbjct: 189 RSDWLLPICSGNERLKGENGQKIHPTQKPEALLYRIILASSRPDDVILDPFFGTGTTGVI 248

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           A+ LRR +IGIE    YI  A  RI   +      +   + KR +PRV F  L+E G I+
Sbjct: 249 ARHLRRHWIGIEQDPTYIKAAQARIDKAEVFDEALMGQASNKRKQPRVTFGCLMENGFIR 308

Query: 301 PGQILTNAQGNISATVCADGTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELH 359
           PG IL +++    A V  DG L S     GSIH++GA++  + +CNGW FW+FE+   L 
Sbjct: 309 PGHILYDSRRRFKAVVNVDGALQSADGRSGSIHKLGAQLQQAVSCNGWIFWHFEENNILL 368

Query: 360 SINTLRILVRKE 371
            ++ LR     E
Sbjct: 369 PLDILRQRYLAE 380


>gi|304319996|ref|YP_003853639.1| modification methylase [Parvularcula bermudensis HTCC2503]
 gi|303298899|gb|ADM08498.1| modification methylase [Parvularcula bermudensis HTCC2503]
          Length = 344

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 194/343 (56%), Positives = 254/343 (74%), Gaps = 2/343 (0%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           ++ +P  SVDLIFADPPYNLQL   L RPD S VD V D+WD+F SF AYDAF RAWL  
Sbjct: 1   MKMIPDGSVDLIFADPPYNLQLGDGLTRPDQSTVDGVNDAWDQFGSFAAYDAFCRAWLSE 60

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            RR+LKP+G +WVIG+YHNIFR+G+++Q+L +WI ND+VW K+NPMPNFRG R QNAHET
Sbjct: 61  ARRLLKPDGAIWVIGTYHNIFRLGSIIQDLEYWIQNDVVWVKTNPMPNFRGTRLQNAHET 120

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           LIWA+   +++  TFNY +LK AN+D+QMRSDW  P+C+G ERL+N  G+KLHPTQKPEA
Sbjct: 121 LIWAARGKESRP-TFNYHSLKTANDDLQMRSDWTFPLCTGQERLKN-GGKKLHPTQKPEA 178

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           LL RIL+ +T PGD++LDPFFG+GT+GAVAK+L R +IGIE +  YID A +RIA+++P 
Sbjct: 179 LLHRILLGTTNPGDLVLDPFFGTGTTGAVAKRLGRHYIGIEREAAYIDAAAERIAAIEPE 238

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
               +T +   R E R+ F  LVE GL+ PG +L  A+    A V ADG+L +    GSI
Sbjct: 239 AAEMVTPMPSPRREARIPFGRLVEDGLLSPGTVLYCAKRRYRAKVKADGSLATPGATGSI 298

Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           H++GA +  + +CNGW FW+ E+ G L  I+TLR  VR ++ +
Sbjct: 299 HKIGAHLQNAPSCNGWTFWHVERQGRLLPIDTLRQTVRAQMAS 341


>gi|332188931|ref|ZP_08390632.1| DNA methylase family protein [Sphingomonas sp. S17]
 gi|332011042|gb|EGI53146.1| DNA methylase family protein [Sphingomonas sp. S17]
          Length = 379

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 208/348 (59%), Positives = 259/348 (74%), Gaps = 3/348 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D+I+ G+ I+ L  LP KSVD++FADPPYNLQL G+L+RPD S VDAVTD+WDKF +F 
Sbjct: 26  LDQILMGDCIAALRSLPDKSVDMVFADPPYNLQLGGELFRPDGSHVDAVTDAWDKFDTFA 85

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYDAFTRAWL  C RVLK NG+LWVIGSYHNIFR+GT +Q+L FWILNDI+WRKSNPMPN
Sbjct: 86  AYDAFTRAWLAECYRVLKDNGSLWVIGSYHNIFRVGTAVQDLGFWILNDIIWRKSNPMPN 145

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIWAS   KA  YTFNY ++K  N+++QMRSDW  PIC G ERL+ KD
Sbjct: 146 FKGTRFTNAHETLIWASKGEKA-KYTFNYRSMKTLNDEIQMRSDWEFPICGGQERLK-KD 203

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPEALL RIL++ T+PGD+I DPFFG+GT+GAVAK+L R +IGIE +  Y  
Sbjct: 204 GHKVHPTQKPEALLYRILLACTRPGDVIADPFFGTGTTGAVAKRLGRRWIGIEREPTYCA 263

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A +RI +  PL    L  +   + +P+VAF  LVE G + PG  L +A+    ATV AD
Sbjct: 264 AAIERIEAALPLDESALATMQSPKAQPKVAFGTLVETGYLAPGMPLMDAKRKWRATVRAD 323

Query: 320 GTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRI 366
           G+L+S   + GSIHR+G+ +    TCNGW FW++E  G L  I+ +R 
Sbjct: 324 GSLLSDCGQAGSIHRLGSLLQNRPTCNGWTFWHYELEGALKPIDAMRQ 371


>gi|330993888|ref|ZP_08317820.1| Modification methylase SmeI [Gluconacetobacter sp. SXCC-1]
 gi|329759156|gb|EGG75668.1| Modification methylase SmeI [Gluconacetobacter sp. SXCC-1]
          Length = 362

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 203/352 (57%), Positives = 264/352 (75%), Gaps = 1/352 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D++++G+ + +++ LPA S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+  +
Sbjct: 6   LDQVLRGDCVEMMKTLPAASIDCVFADPPYNLQLKGELRRPDDSIVDGVDDDWDKFTDLQ 65

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYDAFTRAWL   RRVL+ +GT+WVIGSYHNIFRIG +LQ+L FWILND++WRKSNPMPN
Sbjct: 66  AYDAFTRAWLTEARRVLRKDGTIWVIGSYHNIFRIGAILQDLGFWILNDVIWRKSNPMPN 125

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWA+    +  Y FNY A+KA N+DVQMRSDW +P+C+G ERLRN+ 
Sbjct: 126 FRGRRFTNAHETLIWAARGADS-RYRFNYQAMKALNDDVQMRSDWYLPLCTGGERLRNEH 184

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKPE+LL R+LV+ST   D++LDPF G+GT+ A+A++LRR FIGIE   DY +
Sbjct: 185 GLKLHPTQKPESLLHRVLVASTNVDDVVLDPFTGTGTTTAMARRLRRRFIGIERHPDYAE 244

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  R    +PL    +     +R  PRV F LLVERG++  G +L + Q  + ATV  D
Sbjct: 245 AAIGRARREKPLPLDSVQTTPARRESPRVPFGLLVERGMVPAGTVLMDRQKRVRATVSPD 304

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           GTL+SG   GSIH++GA+++ + +CNGW FWYFE+ GEL  ++ LR  +R E
Sbjct: 305 GTLVSGRHRGSIHKMGAQLTNAPSCNGWTFWYFEREGELVQLDVLRGDIRAE 356


>gi|299134661|ref|ZP_07027853.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
 gi|298590471|gb|EFI50674.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
          Length = 376

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 216/352 (61%), Positives = 274/352 (77%), Gaps = 1/352 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ ++ + KLPA SVDL+FADPPYNLQL G+L RPD S VDAV + WDKFSSF AY
Sbjct: 24  RIVIGDCVAEMTKLPASSVDLVFADPPYNLQLKGELKRPDESHVDAVNNDWDKFSSFAAY 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLA RR +KP+ T+WVIGSYHNIFR+G ++Q+L FWILNDIVWRK+NPMPNFR
Sbjct: 84  DDFTRAWLLAARRAMKPSATIWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKTNPMPNFR 143

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+   ++  YTFNYDALKAANEDVQ RSDWLIP+C+G ERL+ KDG+
Sbjct: 144 GRRFTNAHETMIWAARD-ESTKYTFNYDALKAANEDVQARSDWLIPLCTGDERLKGKDGK 202

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L RS+IG E  + Y   A
Sbjct: 203 KVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRSYIGFERDKTYAAAA 262

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRIA+V+PL    L      R  PRVAF+ L+ERG+I PG  L +++   +A V ADG 
Sbjct: 263 EKRIAAVEPLPEATLAPFLTARDAPRVAFSELIERGMISPGAKLVDSKKKHAALVRADGA 322

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           ++ G ++GSIHR+GA   GSE CNGW+FW+ E    L  I+ LR  +R+E+ 
Sbjct: 323 IMLGDKVGSIHRMGAVAQGSEACNGWSFWHVETKKGLRLIDELRAEIRREMQ 374


>gi|312113930|ref|YP_004011526.1| DNA methylase N-4/N-6 domain protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219059|gb|ADP70427.1| DNA methylase N-4/N-6 domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 373

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 205/351 (58%), Positives = 270/351 (76%), Gaps = 2/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I++G+ + +L ++P+ SVDL+FADPPYNLQL G+L RP+++ VD V  +WD+F+ F  YD
Sbjct: 18  ILQGDCLDILRRMPSASVDLVFADPPYNLQLGGELLRPNNTRVDGVDHAWDRFADFATYD 77

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F+RAWL  CRRVLKPNG LWVIG+YHNIFR+GT LQ+L FW++ND++W K+NPMPNF+G
Sbjct: 78  RFSRAWLSECRRVLKPNGALWVIGTYHNIFRLGTALQDLGFWMMNDVIWLKTNPMPNFKG 137

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            RF NAHETLIWA+   KA+  TFNYD++KA N+D+QMRSDWLIPICSG ERLR+  G K
Sbjct: 138 TRFTNAHETLIWAARDEKARP-TFNYDSMKAFNDDLQMRSDWLIPICSGPERLRDDGGRK 196

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPEALL+R+L+++TKPGD++LDPFFG+GT+GAVAK LRR FIGIE   DY+  A+
Sbjct: 197 AHPTQKPEALLARVLMATTKPGDLVLDPFFGTGTTGAVAKLLRRRFIGIERDPDYVAAAS 256

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
            RIA+++P       ++T KR EPRV F +++ERG+++PG +L +A+  I A V AD +L
Sbjct: 257 ARIAAIEPCDAKAAALITSKRAEPRVPFGMVLERGMLRPGDVLFDAKAEIRAQVMADASL 316

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEK-LGELHSINTLRILVRKEL 372
           +     GSIH VGAK  G   CNGW FW+FE+    L  I+ LR+ VRK +
Sbjct: 317 MWNGTRGSIHSVGAKAQGRGACNGWTFWHFEQPKDGLAPIDLLRMEVRKTM 367


>gi|148253825|ref|YP_001238410.1| DNA adenine methylase CcrM [Bradyrhizobium sp. BTAi1]
 gi|146405998|gb|ABQ34504.1| DNA adenine methylase CcrM [Bradyrhizobium sp. BTAi1]
          Length = 344

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 212/341 (62%), Positives = 264/341 (77%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           + KLP  SVDL+FADPPYNLQL G+L RPD S VDAV D WDKFSSF AYD FTRAWLLA
Sbjct: 1   MSKLPGASVDLVFADPPYNLQLKGELKRPDESQVDAVDDDWDKFSSFAAYDDFTRAWLLA 60

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            RR++KP+ T+WVIGSYHNIFR+G ++Q+L FWILNDIVWRKSNPMPNFRGRRF NAHET
Sbjct: 61  ARRLMKPSATIWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKSNPMPNFRGRRFTNAHET 120

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           +IWA+   KAKGYTFNY+ALKA+NEDVQ RSDWLIP+C+G ERL++ DG+K+HPTQKPE 
Sbjct: 121 MIWAARDEKAKGYTFNYEALKASNEDVQARSDWLIPLCTGEERLKDADGKKVHPTQKPEG 180

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L R +IG E  + Y + A +RIA+V+PL
Sbjct: 181 LLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRRYIGFERDKTYAEAAERRIAAVEPL 240

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
               L      R  PRVAF+ L+ERG+I PG  L +++    A V ADG ++ G ++GSI
Sbjct: 241 PEATLVPFMTAREAPRVAFSELIERGMISPGTKLVDSKRRHGALVRADGAIMLGDKVGSI 300

Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           HR+GA   G   CNGW FW+ E    L  I+ LR  +R E+
Sbjct: 301 HRIGAVAQGLPACNGWTFWHVETTRGLKLIDELRAEIRAEM 341


>gi|146339056|ref|YP_001204104.1| adenine DNA methyltransferase [Bradyrhizobium sp. ORS278]
 gi|146191862|emb|CAL75867.1| adenine DNA methyltransferase [Bradyrhizobium sp. ORS278]
          Length = 344

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 213/342 (62%), Positives = 264/342 (77%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           + KLP  SVDL+FADPPYNLQL G+L RPD S VDAV D WDKFSSF AYD FTRAWLLA
Sbjct: 1   MSKLPGASVDLVFADPPYNLQLKGELKRPDESQVDAVDDDWDKFSSFTAYDDFTRAWLLA 60

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            RRV+KP+ T+WVIGSYHNIFR+G ++Q+L FWILNDIVWRKSNPMPNFRGRRF NAHET
Sbjct: 61  ARRVMKPSATIWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKSNPMPNFRGRRFTNAHET 120

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           +IWA+   KAKGYTFNY+ALKA+NEDVQ RSDWLIP+C+G ERL++ DG+K+HPTQKPE 
Sbjct: 121 MIWAARDEKAKGYTFNYEALKASNEDVQARSDWLIPLCTGEERLKDGDGKKVHPTQKPEG 180

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           LL+R+L+SS+K GD+++DPF G+GT+GAVAK+L R +IG E  + Y + A +RIA+V+PL
Sbjct: 181 LLARVLLSSSKQGDLVIDPFNGTGTTGAVAKRLGRRYIGFERDKAYAEAAERRIAAVEPL 240

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
               L      R  PRVAF+ L+ERG+I PG  L +++    A V ADG ++ G ++GSI
Sbjct: 241 PAETLAPFMTAREAPRVAFSELIERGMIAPGAKLVDSKRRYGALVRADGAIMLGDKVGSI 300

Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           HR+GA   G   CNGW FW+ E  G L  I+ LR  +R E+ 
Sbjct: 301 HRIGAVAQGLPACNGWTFWHVETKGGLRLIDELRAEIRSEMN 342


>gi|220921468|ref|YP_002496769.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219946074|gb|ACL56466.1| DNA methylase N-4/N-6 domain protein [Methylobacterium nodulans ORS
           2060]
          Length = 368

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 214/354 (60%), Positives = 264/354 (74%), Gaps = 2/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDSWDKFSSF 78
            D++I G+ I+ L+ LP  SVDL+FADPPYNLQL    L RPD S VDAV D WD+F+SF
Sbjct: 12  LDEVIHGDCIAALDALPPSSVDLVFADPPYNLQLGPASLLRPDQSAVDAVDDDWDQFASF 71

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTR WL ACRRV+KPN TLWVIGSYHNIFR+G+ LQ+L FWILNDIVWRK+NPMP
Sbjct: 72  EAYDAFTRQWLQACRRVMKPNATLWVIGSYHNIFRVGSALQDLGFWILNDIVWRKANPMP 131

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG+RF NAHETLIWAS S   KGYTF+Y+ALK  N+D+QMRSDW +P+C+G ERL+  
Sbjct: 132 NFRGKRFTNAHETLIWASRSA-QKGYTFHYEALKGGNDDLQMRSDWFLPLCTGEERLKGA 190

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG KLHPTQKPEAL++R ++S++ PGD++LDPFFG+GT+GA AK+L R FIGIE +  Y+
Sbjct: 191 DGRKLHPTQKPEALVARTILSASNPGDVVLDPFFGTGTTGAAAKRLGRRFIGIEREPAYV 250

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
             A +RIA+V+PL    L     KR EPRV F  L+E GLI+ G  LT+ +    A V  
Sbjct: 251 QAARERIAAVEPLSTAALLTAPTKRAEPRVPFLSLLEAGLIRAGSQLTDERRRFKALVRP 310

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ +G   GSIH++GA V G   CNGW FW+ E+ G L  I+  R  +R  L
Sbjct: 311 DGTISAGPACGSIHKIGALVQGLPACNGWTFWHAERGGRLVPIDAFRAEIRAGL 364


>gi|296444555|ref|ZP_06886519.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
           OB3b]
 gi|296257823|gb|EFH04886.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
           OB3b]
          Length = 390

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 201/347 (57%), Positives = 259/347 (74%), Gaps = 1/347 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ ++ G+++ ++  LPA+SVDL+FADPPYNLQL   L RPD S VDAV D WDKF+ F 
Sbjct: 32  RNSVLLGDNVPLMAGLPAESVDLVFADPPYNLQLANALTRPDQSRVDAVDDDWDKFADFS 91

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD+FTR WL A RRV+KPN T++VIGSYHNIFR+G M+Q+L FWILNDIVWRK+NPMPN
Sbjct: 92  AYDSFTRDWLAAARRVMKPNATIFVIGSYHNIFRVGAMMQDLGFWILNDIVWRKTNPMPN 151

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWA+     + YTF+Y+ALKA NED QMRSDWL+PIC+G ERL++  
Sbjct: 152 FRGRRFTNAHETLIWAARDSSCRSYTFHYEALKAGNEDCQMRSDWLLPICTGGERLKDAA 211

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPEALL+R++++++ PGD++LDPFFGSGT+GAVAK+L R ++G+E    Y  
Sbjct: 212 GRKTHPTQKPEALLARVMLAASNPGDLVLDPFFGSGTTGAVAKRLGRDYLGLERDPAYAA 271

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A +RIA+++PL +  +     KR+ PR+AF  LVE GL+  G +LT+  G   A V  D
Sbjct: 272 AARERIAAIEPLPDEAIAAAPTKRSAPRIAFASLVESGLVAAGAMLTDLHGRHRAMVRPD 331

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE-LHSINTLR 365
           G L  G  +GSIH++GA   G   CNGW FW+FE  G  L  I+ LR
Sbjct: 332 GALALGQIVGSIHKIGALAQGLPACNGWTFWHFESGGGALAPIDDLR 378


>gi|170747153|ref|YP_001753413.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653675|gb|ACB22730.1| DNA methylase N-4/N-6 domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 368

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 212/356 (59%), Positives = 270/356 (75%), Gaps = 1/356 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSF 78
            D+++ G+ I+ +  LPA SVD +FADPPYNLQL    L RPD S VDAV D WDKF++F
Sbjct: 12  LDQVLVGDCIAAMNALPASSVDCVFADPPYNLQLGDAGLLRPDQSRVDAVDDDWDKFATF 71

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYD FTR WL ACRRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMP
Sbjct: 72  EAYDTFTRDWLSACRRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMP 131

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG+RF NAHETLIWAS S  +KGYTF+Y+ALK  NED+QMRSDW IP+C+G ERL++ 
Sbjct: 132 NFRGKRFTNAHETLIWASRSADSKGYTFHYEALKGGNEDLQMRSDWFIPLCTGEERLKDA 191

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIGIE +  Y 
Sbjct: 192 EGRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRRFIGIEREATYA 251

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A +RIA+V+ L    L V   KR EPRV F  ++E G I+PG+ +T+ +    ATV  
Sbjct: 252 EAARERIAAVETLSRAALMVAPTKRAEPRVPFLSVIEAGHIRPGETVTDERRRFRATVRP 311

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           DG L +G  +GSIH++GA V G   CNGW FW+ E+ G+   I+T R  +R+ + N
Sbjct: 312 DGQLDNGLVIGSIHKIGALVQGLPACNGWTFWHVERGGKPVVIDTFRAGLRQAMAN 367


>gi|148292196|dbj|BAF62911.1| putative adenine DNA methyltransferase [uncultured bacterium]
          Length = 358

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 208/355 (58%), Positives = 263/355 (74%), Gaps = 2/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD II GN +  L  LP  SVDL+FADPPYNLQL+G L RPD S+VDAV D WDKF SF 
Sbjct: 3   KDVIICGNCVDQLAGLPDNSVDLVFADPPYNLQLSGNLTRPDQSVVDAVDDDWDKFDSFA 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD  + AWL  CRRVLK +G LWVIGSYHNIFR+G +LQ+L +WILND+VWRKSNPMPN
Sbjct: 63  AYDQLSEAWLRECRRVLKDDGALWVIGSYHNIFRLGRLLQDLGYWILNDVVWRKSNPMPN 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWA+ S  +  YTFNYDA+KA NE VQMRSDW +PIC+G+ERL+++ 
Sbjct: 123 FRGRRFTNAHETLIWAAKSEAS-KYTFNYDAMKALNEGVQMRSDWYMPICTGAERLKDQA 181

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE LL+R+++SSTK GD ILDPFFG+GT+GAVA++L R +IGIE  +DY  
Sbjct: 182 GQKAHPTQKPENLLARVILSSTKRGDTILDPFFGTGTTGAVARRLGRHYIGIEQNEDYAK 241

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A +RIA+VQP+ +  +     KR +PRV F  LVE G +  G  L +   ++ A VCAD
Sbjct: 242 LAAERIAAVQPIVDDVILSTPEKRAQPRVPFGALVEGGWLAAGDTLFDKTKSVRARVCAD 301

Query: 320 GTLISGT-ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           G+L++   + GSIH +GA +    +CNGW +W+  + G+  SI+ LR   RK + 
Sbjct: 302 GSLVTDKAQKGSIHGLGATLQNQPSCNGWQYWHVTRDGKDVSIDLLRAEYRKSMK 356


>gi|148654551|ref|YP_001274756.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148566661|gb|ABQ88806.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 373

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 196/353 (55%), Positives = 257/353 (72%), Gaps = 3/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II+G+ + VL+  PAKSVDLIFADPPYNLQL  QL RP+ ++VD V D WD+F++   
Sbjct: 18  NEIIQGDCVEVLKTFPAKSVDLIFADPPYNLQLRNQLLRPNQTVVDGVDDEWDQFANVAE 77

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTR WL ACRRVLK +GT+WVIGSYHNIFRIGT++ +L +WILND++W K+NPMPNF
Sbjct: 78  YDAFTRNWLSACRRVLKDDGTIWVIGSYHNIFRIGTIMMDLGYWILNDVIWYKTNPMPNF 137

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG RFQNA ETLIWA  S + K YTFNY A+K  N++ QM++ W IP+C+G ER++  +G
Sbjct: 138 RGTRFQNATETLIWAKKSVEQKKYTFNYHAMKHLNDEKQMQNVWHIPLCTGPERIK-LNG 196

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+H TQKPEALL R++++S+ PGD++LDPFFGSGT+GAVAKKL+R++IGIE++  YIDI
Sbjct: 197 KKVHSTQKPEALLYRVILASSNPGDVVLDPFFGSGTTGAVAKKLKRNYIGIELEPAYIDI 256

Query: 261 ATKRIASV-QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           A KRI ++   L +    V   KRT PRV+F  L+E   I  GQ + +    + ATV AD
Sbjct: 257 ARKRIDTLPMSLLDETELVTPSKRTVPRVSFGQLIESHYITVGQKVFSKDRKVVATVKAD 316

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFE-KLGELHSINTLRILVRKE 371
             L+ G   GSIHR+ A        NGW +WY E + G + SI+ LR   R E
Sbjct: 317 SHLLWGNVTGSIHRIAALAQNKPAFNGWEYWYCEDQEGNVISIDALRERYRIE 369


>gi|296536588|ref|ZP_06898668.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas
           cervicalis ATCC 49957]
 gi|296263084|gb|EFH09629.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas
           cervicalis ATCC 49957]
          Length = 363

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 199/350 (56%), Positives = 254/350 (72%), Gaps = 2/350 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D I++G+ I +L  LP  SV  IFADPPYNLQL G+L RPD S+VD V D+WD+FS   
Sbjct: 9   LDCILEGDCIEMLRALPPASVHAIFADPPYNLQLKGELRRPDESVVDGVDDAWDRFSDLA 68

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD+FTRAWL   RRVL+ +GT+WVIGSYHN+FR+G  LQ+L+FWILND++WRK+NPMPN
Sbjct: 69  TYDSFTRAWLTEARRVLRKDGTIWVIGSYHNVFRLGVALQDLDFWILNDVIWRKANPMPN 128

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWAS   ++  Y FNY A+K+ N+DVQMRSDW IP+C+GSERLR++ 
Sbjct: 129 FRGRRFTNAHETLIWASRGQES-RYKFNYTAMKSLNDDVQMRSDWFIPLCTGSERLRDEK 187

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K+HPTQKPEALL R+++S T PGD++LDPF GSGT+ AVA++L R +IGIE    Y  
Sbjct: 188 GQKVHPTQKPEALLHRVILSCTSPGDVVLDPFLGSGTTAAVARRLGRRYIGIERDPTYAA 247

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI +V+PL    + V   KR +PR+ F  LVERGL+ PG  L +      A V AD
Sbjct: 248 AARARIQAVEPLSESAMLVTPTKREQPRIPFGALVERGLVPPGARLVDRHRRFVAEVGAD 307

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFE-KLGELHSINTLRILV 368
           G+L  G   GSIH+VGA V  + +CNGW FW+ E + G L  ++ LR  +
Sbjct: 308 GSLRCGKAQGSIHQVGAAVQEAPSCNGWLFWHVERRDGTLRLLDELRAEL 357


>gi|58038819|ref|YP_190783.1| adenine DNA methyltransferase [Gluconobacter oxydans 621H]
 gi|58001233|gb|AAW60127.1| Adenine DNA methyltransferase [Gluconobacter oxydans 621H]
          Length = 361

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 193/347 (55%), Positives = 255/347 (73%), Gaps = 1/347 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I++G  I  ++ LP  SVD IFADPPYNLQL G+L RPD ++VD V D WDKF+ +  
Sbjct: 8   DQILRGECIETMKTLPDGSVDCIFADPPYNLQLRGELRRPDETVVDGVDDDWDKFADYAT 67

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL   RR+L  +GT+WVIGSYHN+FR+G ++Q+L FWILNDIVWRKSNPMPNF
Sbjct: 68  YDNFTREWLSEARRILHKDGTIWVIGSYHNVFRLGAIMQDLGFWILNDIVWRKSNPMPNF 127

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+  P++  Y FNY A+KA N+D+QMRSDW +P+C+G+ERL+N+ G
Sbjct: 128 RGRRFTNAHETLIWAARGPQS-KYRFNYQAMKALNDDLQMRSDWYLPLCTGNERLKNEHG 186

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+LV+ST   D++LDPF GSGT+ A+AK+L R +I IE   DY+  
Sbjct: 187 LKLHPTQKPESLLHRVLVASTNANDVVLDPFCGSGTTPAMAKRLGRHYIAIERHPDYVKA 246

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +R+A  + L + +L     KR  PR+ F   VE G++  G +L + Q  + ATV  DG
Sbjct: 247 ARERVAREERLTSEQLATTPAKREMPRIPFGSFVETGVLPAGTLLYDRQKRLKATVTPDG 306

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
           TL+SG + GSIH++GA ++ + +CNGW FWYFE+ G+   I+ LR  
Sbjct: 307 TLVSGNQRGSIHKLGAMLTNAPSCNGWTFWYFERDGQYVQIDVLRQE 353


>gi|162149132|ref|YP_001603593.1| DNA methylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545124|ref|YP_002277353.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787709|emb|CAP57305.1| putative DNA methylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532801|gb|ACI52738.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 370

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 197/348 (56%), Positives = 256/348 (73%), Gaps = 1/348 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D+I++G+ + +++ LP  S+D IFADPPYNLQL G+L RPD S+VD V D WDKFS   
Sbjct: 11  LDQILRGDCVELMQTLPTGSIDCIFADPPYNLQLRGELRRPDDSVVDGVDDDWDKFSDLA 70

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTRAWL   RR+L+ +GT+WVIGSYHNIFRIG +LQ+L FWILND++WRKSNPMPN
Sbjct: 71  EYDRFTRAWLGEARRLLRKDGTIWVIGSYHNIFRIGAILQDLGFWILNDVIWRKSNPMPN 130

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWA+    +  Y FNY A+KA N+DVQMRSDW +P+C+G ERLRN  
Sbjct: 131 FRGRRFTNAHETLIWAARGADS-RYRFNYQAMKALNDDVQMRSDWYLPLCTGGERLRNSH 189

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKPE+LL R+LV+ST   DI+LDPF G+GT+ A+A++LRR FIGIE   DY +
Sbjct: 190 GLKLHPTQKPESLLHRVLVASTNVDDIVLDPFAGTGTTTAMARRLRRRFIGIERHPDYAE 249

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  R    +P+    +     KR  PRV F  LVERGL+  G ++ +    +SATV  D
Sbjct: 250 AAIGRARRERPVPLDSVLTTPAKRETPRVPFGSLVERGLLPVGTVMYDRHQRVSATVAPD 309

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
           GTL+SGT+ GSIH++GA ++ + +CNGW FW+ ++ G++  ++TLR  
Sbjct: 310 GTLVSGTQRGSIHKLGALLTNAPSCNGWTFWHLQRDGQMIPLDTLRNE 357


>gi|156741987|ref|YP_001432116.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156233315|gb|ABU58098.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 370

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 184/351 (52%), Positives = 245/351 (69%), Gaps = 3/351 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II+G+ I VL+  P +SVDLIFADPPYNLQL   L RPD ++VD V D+WD+F   + 
Sbjct: 14  NAIIQGDCIQVLQMFPEQSVDLIFADPPYNLQLRHALLRPDQTVVDGVDDAWDRFEDVQE 73

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL ACRRVLK +GT+WVIG+YHNIFR+G ++ +L +WILND++W K+NPMPNF
Sbjct: 74  YDAFTRAWLGACRRVLKDDGTIWVIGTYHNIFRVGAIMMDLGYWILNDVIWHKTNPMPNF 133

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG RFQNA ETLIWA  S   K YTFNY A+K  NE+ QM++ W +P+C+G+ER++  +G
Sbjct: 134 RGVRFQNATETLIWAKKSADQKKYTFNYHAMKHLNEEKQMQNVWHLPLCTGAERVK-ING 192

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VA++L+R +IGIE+   Y++I
Sbjct: 193 KKAHSTQKPEALLYRVILSSSNPGDLVLDPFFGSGTTGVVARRLKRHYIGIELDPAYVEI 252

Query: 261 ATKRIASVQ-PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           A  RI      + +  +     KR  PRV F  LVE   ++ GQ L ++  N+ A V AD
Sbjct: 253 ARTRIEKTPVSVCDDAMLATRSKRDMPRVGFGQLVEAQYLRVGQNLYSSDRNVVAIVRAD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKL-GELHSINTLRILVR 369
             L  G    SIHR+ A        NGW +W++E   G L SI++LR   R
Sbjct: 313 SQLQWGNITSSIHRIAALAQHKPAFNGWEYWHYEDQAGRLVSIDSLREQYR 363


>gi|148260450|ref|YP_001234577.1| DNA methylase N-4/N-6 domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146402131|gb|ABQ30658.1| DNA methylase N-4/N-6 domain protein [Acidiphilium cryptum JF-5]
          Length = 360

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 186/350 (53%), Positives = 255/350 (72%), Gaps = 1/350 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D+++ G+++ ++  LP  S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+ F 
Sbjct: 11  LDQLLLGDAVEMMRMLPDASIDCVFADPPYNLQLRGELRRPDDSVVDGVDDDWDKFTDFA 70

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD F+RAWL   RR++  + T+WVIGSYHNIFR+G ++Q+L FWILND++WRK+NPMPN
Sbjct: 71  AYDEFSRAWLSEARRLMHKDATIWVIGSYHNIFRLGAIMQDLGFWILNDVIWRKTNPMPN 130

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWA+  PK+  Y FNY A+K+ N+D QMRSDW IP+C+G ERLRN+ 
Sbjct: 131 FRGRRFTNAHETLIWAAREPKS-RYRFNYQAMKSLNDDTQMRSDWTIPLCTGGERLRNQH 189

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKPEALL R+++++T P D++LDPF G+ T+  VAK+L R FIGIE    Y++
Sbjct: 190 GLKLHPTQKPEALLHRVILAATNPDDVVLDPFSGTATTATVAKRLNRHFIGIERHPAYVE 249

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
               R+  ++         +  +R  PR+AF +LVERGL+ PG +L +    +SATV AD
Sbjct: 250 AGWARLREMRAAPAHLTRPMPSRREAPRIAFGVLVERGLVPPGTLLHDRLRRVSATVAAD 309

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
            ++I+G   GSIH+VGA V  + +CNGW FW+ E+ G L +++ +R  +R
Sbjct: 310 ASIIAGAHRGSIHQVGAAVQNAASCNGWTFWHIEREGRLVALDHVRETLR 359


>gi|309792788|ref|ZP_07687231.1| DNA methylase N-4/N-6 domain-containing protein [Oscillochloris
           trichoides DG6]
 gi|308225152|gb|EFO78937.1| DNA methylase N-4/N-6 domain-containing protein [Oscillochloris
           trichoides DG6]
          Length = 357

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 188/356 (52%), Positives = 253/356 (71%), Gaps = 3/356 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I +L  LP K VDLIFADPPYNLQL  +L RP+ ++VDAVTD+WD+F+ F 
Sbjct: 1   MNHILHGSCIDLLPSLPEKCVDLIFADPPYNLQLQNELIRPNQTVVDAVTDTWDQFADFA 60

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FT  WL ACRRVLK +GT+WVIGSYHNIFR+G ++ +L +WILND++W K+NPMPN
Sbjct: 61  AYDHFTEQWLSACRRVLKDDGTIWVIGSYHNIFRVGKIMMDLGYWILNDVIWHKTNPMPN 120

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG RFQNA ET+IWA  S + K YTF+Y A+K  N+D QM++ W IP+C+G+ER++  D
Sbjct: 121 FRGTRFQNATETMIWAKKSREQKKYTFHYQAMKNFNDDKQMQNVWYIPLCTGAERIK-ID 179

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K H TQKPEALL R+LV+S+ PGD++LDPFFGSGT+GAVAK+L+R++IGIE   +Y++
Sbjct: 180 GKKAHSTQKPEALLYRVLVASSNPGDMVLDPFFGSGTTGAVAKRLQRNYIGIERSAEYVE 239

Query: 260 IATKRIASVQPLGNIELT-VLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           IA +RIA++          +   KR  PR++F  L+E   I  GQ + +    ++A V A
Sbjct: 240 IARQRIAAISATCLEHGELLTRSKRNAPRISFGQLLEAQYISVGQPIFSQDRAVTAIVKA 299

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEK-LGELHSINTLRILVRKELY 373
           D  LI   + GSIH++ A V      NGW +WY+E   G L SI+ LR   R E +
Sbjct: 300 DAQLICNDQTGSIHKIAASVQNRAAANGWEYWYYEDAAGNLVSIDELRERYRHENH 355


>gi|326403643|ref|YP_004283725.1| hypothetical protein ACMV_14960 [Acidiphilium multivorum AIU301]
 gi|325050505|dbj|BAJ80843.1| hypothetical protein ACMV_14960 [Acidiphilium multivorum AIU301]
          Length = 358

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 186/350 (53%), Positives = 255/350 (72%), Gaps = 1/350 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D+++ G+++ ++  LP  S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+ F 
Sbjct: 9   LDQLLLGDAVEMMRMLPDASIDCVFADPPYNLQLRGELRRPDDSVVDGVDDDWDKFTDFA 68

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD F+RAWL   RR++  + T+WVIGSYHNIFR+G ++Q+L FWILND++WRK+NPMPN
Sbjct: 69  AYDEFSRAWLSEARRLMHKDATIWVIGSYHNIFRLGAIMQDLGFWILNDVIWRKTNPMPN 128

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWA+  PK+  Y FNY A+K+ N+D QMRSDW IP+C+G ERLRN+ 
Sbjct: 129 FRGRRFTNAHETLIWAAREPKS-RYRFNYQAMKSLNDDTQMRSDWTIPLCTGGERLRNQH 187

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKPEALL R+++++T P D++LDPF G+ T+  VAK+L R FIGIE    Y++
Sbjct: 188 GLKLHPTQKPEALLHRVILAATNPDDVVLDPFSGTATTATVAKRLNRHFIGIERHPAYVE 247

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
               R+  ++         +  +R  PR+AF +LVERGL+ PG +L +    +SATV AD
Sbjct: 248 AGWARLREMRAAPAHLTRPMPSRREAPRIAFGVLVERGLVPPGTLLHDRLRRVSATVAAD 307

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
            ++I+G   GSIH+VGA V  + +CNGW FW+ E+ G L +++ +R  +R
Sbjct: 308 ASIIAGAHRGSIHQVGAAVQNAASCNGWTFWHIEREGRLVALDHVRETLR 357


>gi|170739049|ref|YP_001767704.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168193323|gb|ACA15270.1| DNA methylase N-4/N-6 domain protein [Methylobacterium sp. 4-46]
          Length = 396

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 217/355 (61%), Positives = 265/355 (74%), Gaps = 2/355 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ-LYRPDHSLVDAVTDSWDKFSSF 78
            D++I+G+ ++ L+ LP  SVDL+FADPPYNLQL    L RPD S VDAV D WD+F+SF
Sbjct: 40  LDEVIQGDCLAALDALPPSSVDLVFADPPYNLQLGEAALLRPDQSAVDAVDDDWDQFASF 99

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTR WL ACRRV+KPN TLWVIGSYHNIFR+G+ LQ+L FWILNDIVWRK+NPMP
Sbjct: 100 EAYDAFTRQWLQACRRVMKPNATLWVIGSYHNIFRVGSALQDLGFWILNDIVWRKANPMP 159

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG+RF NAHETLIWAS S   KGYTF+Y++LK  N+D+QMRSDW +P+C+G ERL+ +
Sbjct: 160 NFRGKRFTNAHETLIWASRSA-QKGYTFHYESLKGGNDDLQMRSDWFLPLCTGEERLKGE 218

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG KLHPTQKPEALL+R ++S++ PGD++LDPFFG+GT+GAVAK+L R FIGIE +  Y 
Sbjct: 219 DGRKLHPTQKPEALLARTILSASNPGDVVLDPFFGTGTTGAVAKRLGRRFIGIERESAYA 278

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
             A  RIA+V+PL    L     KR EPRV F  L+E GLI PG  LT+ +    A V  
Sbjct: 279 AAARARIAAVEPLSTAALLTAPAKRAEPRVPFLNLIEAGLIAPGSQLTDERRRFRALVRP 338

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL  G   GSIH++GA V G   CNGW FW+ E+ G L  I+ LR  +R  L 
Sbjct: 339 DGTLSVGPACGSIHKIGALVQGLPACNGWTFWHTERGGRLVVIDALRAQIRAGLE 393


>gi|262276831|ref|ZP_06054624.1| modification methylase CcrMI (Adenine-specificmethyltransferase
           CcrMI) (M.CcrMI) [alpha proteobacterium HIMB114]
 gi|262223934|gb|EEY74393.1| modification methylase CcrMI (Adenine-specificmethyltransferase
           CcrMI) (M.CcrMI) [alpha proteobacterium HIMB114]
          Length = 353

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/350 (51%), Positives = 250/350 (71%), Gaps = 2/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + +  L+++ ++SVDLIFADPPYNLQL  +L+RPD S V AV D WDKF SF+ YD
Sbjct: 6   LYNLDCLGKLKEIESESVDLIFADPPYNLQLKNKLFRPDASKVSAVNDYWDKFDSFKTYD 65

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT +WL  C+R+LK NG++WVIGSYHNIFR+G ++Q+ ++WILND++W K NPMPNF+G
Sbjct: 66  DFTNSWLKECKRILKKNGSIWVIGSYHNIFRVGKLIQDNSYWILNDVIWNKRNPMPNFKG 125

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            R  NAHETLIWA+ S K+  YTFNY ++K  NED Q+RSDW IPIC+GSER+ +K+ +K
Sbjct: 126 TRLTNAHETLIWAAKSEKS-KYTFNYHSMKTFNEDKQLRSDWDIPICNGSERITSKN-KK 183

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL R+L+ ++   DI+LDPF G+GT+GAVAKKL R+FIGIE  + Y   A 
Sbjct: 184 IHSTQKPEALLYRVLLCASNKNDIVLDPFMGTGTTGAVAKKLGRNFIGIEKDKKYFKAAE 243

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +RI  ++ +       +T K+ E R+ F  LVE G+++PG  L + +    A V +DG++
Sbjct: 244 QRIKRIKEIDENFNIPMTNKKKEKRIPFGYLVETGIVEPGLNLFDLKKRYKAKVMSDGSI 303

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                 GSIH+VGA++ G  +CNGW++W+F   G+L  I+ LR  +R  L
Sbjct: 304 YCNKIQGSIHKVGAEIQGMPSCNGWSYWHFNIEGKLEPIDYLRKKIRSSL 353


>gi|16082180|ref|NP_394624.1| adenine specific DNA methyltransferase [Thermoplasma acidophilum
           DSM 1728]
 gi|10640479|emb|CAC12293.1| probable adenine specific DNA methyltransferase [Thermoplasma
           acidophilum]
          Length = 381

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 186/354 (52%), Positives = 249/354 (70%), Gaps = 3/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + +I G+SI +++++P  SVDLIFADPPYNLQL  +LYRP+ + V+ V++ WDKF SF+
Sbjct: 24  LNNVISGDSIEIMKQIPDNSVDLIFADPPYNLQLENELYRPNETKVNGVSEDWDKFRSFQ 83

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FT  WL  C+R+LK +GT+WVIG+YHNIFR+G ++Q+L FWILNDIVW K+NPMPN
Sbjct: 84  DYDDFTLNWLSQCKRILKESGTIWVIGTYHNIFRVGKIMQDLGFWILNDIVWIKTNPMPN 143

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIWAS   ++  YTFNY  +KA N+D+QMRSDW IPIC G ER++  +
Sbjct: 144 FKGTRFNNAHETLIWASKDKES-KYTFNYKTMKAYNDDLQMRSDWYIPICQGDERIK-IN 201

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+KLHPTQKPEALL RI+ +++KPGDI+LDPF G+GT+  VAKKL RSFIGIE +  Y+D
Sbjct: 202 GQKLHPTQKPEALLYRIITATSKPGDIVLDPFAGTGTTLVVAKKLGRSFIGIEKEPLYVD 261

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
              +R+ +        L     +    RV F  L+E G ++ G+ L +  G   A V A+
Sbjct: 262 ACRERLKNTASYQQK-LLDYPLEIRPKRVPFGSLIENGYVKAGEYLYSPDGEARALVLAN 320

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GTL    + GSIH++ A +      NGW FWY ++ G+L SIN LR  + K+ Y
Sbjct: 321 GTLSYEDKYGSIHKISAMILNKPANNGWAFWYVKRDGKLVSINDLRQKLLKDQY 374


>gi|240139930|ref|YP_002964407.1| site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacterium extorquens AM1]
 gi|240009904|gb|ACS41130.1| site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacterium extorquens AM1]
          Length = 398

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 215/353 (60%), Positives = 269/353 (76%), Gaps = 2/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSF 78
            D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF
Sbjct: 44  LDEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSF 103

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            AYD FTRAWL A RRV+KPNGTLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMP
Sbjct: 104 SAYDDFTRAWLKAARRVMKPNGTLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMP 163

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG+RF NAHETLIWAS SP+A  YTF+YDALKA NED+QMRSDW IP+C+G ERL+++
Sbjct: 164 NFRGKRFTNAHETLIWASRSPQA-KYTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDE 222

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E    Y 
Sbjct: 223 AGRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYA 282

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
             A  RI S++ L    L + T KR+EPR+ F  +VE G ++PG+ LT+ +    ATV  
Sbjct: 283 TAARARIDSIETLSAASLALATPKRSEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRP 342

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           DG L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R +
Sbjct: 343 DGQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLVCIDDFRTEMRGQ 395


>gi|254562354|ref|YP_003069449.1| site-specific DNA-methyltransferase [Methylobacterium extorquens
           DM4]
 gi|254269632|emb|CAX25603.1| site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacterium extorquens DM4]
          Length = 398

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/353 (60%), Positives = 266/353 (75%), Gaps = 2/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSF 78
            D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF
Sbjct: 44  LDEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSF 103

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMP
Sbjct: 104 SAYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMP 163

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG+RF NAHETLIWAS SP+A  YTF+YDALKA NED+QMRSDW IP+C+G ERL+++
Sbjct: 164 NFRGKRFTNAHETLIWASRSPQA-KYTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDE 222

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E    Y 
Sbjct: 223 AGRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYA 282

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
             A  RI S++ L    L +   KR EPR+ F  +VE G ++PG+ LT+ +    ATV  
Sbjct: 283 TAARARIDSIETLSAASLALAMPKRAEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRP 342

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           DG L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R +
Sbjct: 343 DGQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLVCIDDFRTEMRGQ 395


>gi|163852596|ref|YP_001640639.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163664201|gb|ABY31568.1| DNA methylase N-4/N-6 domain protein [Methylobacterium extorquens
           PA1]
          Length = 398

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 214/353 (60%), Positives = 267/353 (75%), Gaps = 2/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSF 78
            D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF
Sbjct: 44  LDEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSF 103

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMP
Sbjct: 104 SAYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMP 163

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG+RF NAHETLIWAS SP+A  YTF+YDALKA NED+QMRSDW IP+C+G ERL+++
Sbjct: 164 NFRGKRFTNAHETLIWASRSPQA-KYTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDE 222

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E    Y 
Sbjct: 223 AGRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYA 282

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
             A  RI S++ L    L + T KR EPR+ F  +VE G ++PG+ LT+ +    ATV  
Sbjct: 283 TAARARIDSIETLSAASLALATPKRAEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRP 342

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           DG L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R +
Sbjct: 343 DGQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLVCIDDFRTEMRGQ 395


>gi|218531437|ref|YP_002422253.1| DNA methylase N-4/N-6 domain protein [Methylobacterium
           chloromethanicum CM4]
 gi|218523740|gb|ACK84325.1| DNA methylase N-4/N-6 domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 398

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/353 (60%), Positives = 267/353 (75%), Gaps = 2/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSF 78
            D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF
Sbjct: 44  LDEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSF 103

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMP
Sbjct: 104 SAYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMP 163

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG+RF NAHETLIWAS SP+A  YTF+YDALKA NED+QMRSDW IP+C+G ERL+++
Sbjct: 164 NFRGKRFTNAHETLIWASRSPQA-KYTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDE 222

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E    Y 
Sbjct: 223 AGRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYA 282

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
             A  RI  ++ L    L + T KR+EPR+ F  +VE G ++PG+ LT+ +    ATV  
Sbjct: 283 TAARARIDGIETLSAASLALATPKRSEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRP 342

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           DG L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R +
Sbjct: 343 DGQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERSGKLVCIDDFRTEMRGQ 395


>gi|49420962|gb|AAT65821.1| M.EsaWC2I [uncultured bacterium]
          Length = 366

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 192/358 (53%), Positives = 253/358 (70%), Gaps = 6/358 (1%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++II+G+ I  L   P KS+DLIFADPPYNLQL  +L+RP+ + VDAV D WDKF S +
Sbjct: 5   LNQIIEGDCIETLSTFPEKSIDLIFADPPYNLQLQNELHRPNMTKVDAVDDQWDKFESLQ 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTR WL AC+RVLKP GT+WVIG+YHNIFR+G ++Q+L FWILND++W K+NPMPN
Sbjct: 65  AYDEFTRRWLTACKRVLKPTGTIWVIGTYHNIFRVGAIMQDLGFWILNDVIWIKTNPMPN 124

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERLRNK 198
           FRG RF NAHETLIWAS + K   YTFN+ A+K  N+D QMRSDW  + + +GSER+++ 
Sbjct: 125 FRGVRFTNAHETLIWAS-TGKGATYTFNHQAMKGLNDDKQMRSDWWLLSLATGSERVKDD 183

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            GEK H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VAK+L R++IG+E ++ YI
Sbjct: 184 HGEKAHSTQKPEALLYRVILSSSNPGDVVLDPFFGSGTTGVVAKRLHRNWIGVEREKKYI 243

Query: 259 DIATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ-GNISAT 315
           +IA KRI +VQP     +   V +  +T PRV F+ LVE G +QPGQ L   +  N  A 
Sbjct: 244 EIARKRIDAVQPEVFNPVVFDVRSKAKTAPRVEFSTLVEHGYVQPGQTLFFRKDTNKVAF 303

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           +  D  L +G    GSIH+ G+    +  CNGW  W+ +  G   S+  LR   R ++
Sbjct: 304 IKPDARLRTGDGFEGSIHQAGSYYMNNAPCNGWEHWFVQVNGHFISLGDLREQFRMDM 361


>gi|159899562|ref|YP_001545809.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892601|gb|ABX05681.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 375

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 203/355 (57%), Positives = 254/355 (71%), Gaps = 7/355 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I+ G+   VL  LP  SVDLIFADPPYNLQL G L RP+ + VDAV D WD F  F A
Sbjct: 9   DQILLGDCRDVLPLLPPASVDLIFADPPYNLQLRGDLLRPNMTHVDAVDDDWDSFRDFAA 68

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL AC+RVLK NGT+WVIGSYHNI+R+GT+LQ+L FWILNDIVW K NPMPNF
Sbjct: 69  YDAFTRAWLQACQRVLKDNGTMWVIGSYHNIYRVGTILQDLGFWILNDIVWIKRNPMPNF 128

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG R  NAHETLIW +  P  + YTFNY AL+  N+D QMRSDW  P+C+G+ERLR  +G
Sbjct: 129 RGVRLTNAHETLIWCAKLP-GQKYTFNYHALRHLNDDKQMRSDWEFPLCTGNERLR-ING 186

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K+H TQKPEALL R+L++S+  GD++LDPFFG+GT+GAVAK+L R +IGIE    Y++ 
Sbjct: 187 NKVHSTQKPEALLYRVLLASSNVGDVVLDPFFGTGTTGAVAKRLARHYIGIERDPSYVEA 246

Query: 261 ATKRIASVQ-PLGNIELTVLTG-KRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISATVC 317
           A  RIA+++ P     L  L   KR  PR+ F  L+E GL+Q GQ L  N   N+ AT+ 
Sbjct: 247 ARGRIAAIESPSSTDALQALPSNKRRIPRIPFGNLLEHGLLQAGQQLWFNRDPNLVATLL 306

Query: 318 ADGTL-ISGTELGSIHRVGAKVSGSETCNGWNFWYFE-KLGELHSINTLRILVRK 370
           AD +L +S    GSIH++G  ++G  +CNGW  W+F+   G L SI+ LR  VR+
Sbjct: 307 ADASLRMSDGTRGSIHKLGTILTGQPSCNGWEHWFFQASDGTLTSIDVLRQEVRR 361


>gi|188582617|ref|YP_001926062.1| DNA methylase N-4/N-6 domain protein [Methylobacterium populi
           BJ001]
 gi|179346115|gb|ACB81527.1| DNA methylase N-4/N-6 domain protein [Methylobacterium populi
           BJ001]
          Length = 370

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/352 (59%), Positives = 264/352 (75%), Gaps = 2/352 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSF 78
            D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF
Sbjct: 16  LDEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSF 75

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMP
Sbjct: 76  AAYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMP 135

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG+RF NAHETLIWAS SP+A  YTF+YDALKA NED+QMRSDW IP+C+G ERL+++
Sbjct: 136 NFRGKRFTNAHETLIWASRSPQA-KYTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDE 194

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVA++L R FIG E    Y 
Sbjct: 195 AGRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVARRLGRHFIGCERDPTYA 254

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
             A  RI  ++ L    L + T KR EPR+ F  +VE G ++ G+ LT+ +    ATV  
Sbjct: 255 AAARTRIDGIETLSAASLALATPKRAEPRIPFLSVVEAGHVRAGETLTDERRRFRATVRP 314

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
           DG L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R 
Sbjct: 315 DGQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLICIDDYRSEMRA 366


>gi|156742203|ref|YP_001432332.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156233531|gb|ABU58314.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 369

 Score =  365 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 191/362 (52%), Positives = 255/362 (70%), Gaps = 8/362 (2%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++II+G+ + +L  LP  S+DLIFADPPY+LQL  +L+RP+ + VDAV D WDKF S +
Sbjct: 5   LNQIIEGDCVEILNTLPETSIDLIFADPPYHLQLQNELHRPNMTKVDAVDDDWDKFESMQ 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTR WL AC+RVLKP GT+WVIG+YHNIFR+G M+Q+L FWILND++W K NPMPN
Sbjct: 65  AYDEFTRTWLTACKRVLKPTGTIWVIGTYHNIFRVGAMMQDLGFWILNDVIWIKLNPMPN 124

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI-CSGSERLRNK 198
           FRG RF NAHETLIWAS + K   YTFNY A+K  N++ QMRSDW +    +GSER++N+
Sbjct: 125 FRGVRFTNAHETLIWAS-TGKDATYTFNYYAMKGLNDEKQMRSDWWLLPLATGSERVKNE 183

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G+K H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VAK+L R++IGIE ++ Y+
Sbjct: 184 HGDKAHSTQKPEALLYRVILSSSNPGDVVLDPFFGSGTTGVVAKRLHRNWIGIEKEKRYV 243

Query: 259 DIATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISAT 315
            IA KRI ++QP         V +  ++ P+V F++LVE G +QPGQ L         AT
Sbjct: 244 QIAQKRIDAMQPEMFDAATFDVKSKAKSAPKVEFSVLVEHGYVQPGQRLFFGKDKTKVAT 303

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR--KEL 372
           +  D  L +     GSIH+ G+    +  CNGW  W+ E  G++ S++ +R   R  K L
Sbjct: 304 IKPDARLRTADGFEGSIHQAGSHYMNNAPCNGWEHWFIEVDGQMISLDEVREKFRVDKGL 363

Query: 373 YN 374
           YN
Sbjct: 364 YN 365


>gi|219850190|ref|YP_002464623.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219544449|gb|ACL26187.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 369

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 191/362 (52%), Positives = 254/362 (70%), Gaps = 8/362 (2%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +++I+G+ + +L  LP  S+DLIFADPPY+LQL  +LYRP+ + VDAV D WDKF S +
Sbjct: 5   LNQVIEGDCVEILNTLPETSIDLIFADPPYHLQLQNELYRPNMTKVDAVDDDWDKFESMQ 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTR WL AC+RVLKP GT+WVIG+YHNIFR+G ++Q+L FWILND++W K NPMPN
Sbjct: 65  AYDEFTRTWLTACKRVLKPTGTIWVIGTYHNIFRVGAIMQDLGFWILNDVIWIKLNPMPN 124

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI-CSGSERLRNK 198
           FRG RF NAHETLIWAS + K   YTFNY A+K  N++ QMRSDW +    +GSER++N+
Sbjct: 125 FRGVRFTNAHETLIWAS-TGKDATYTFNYYAMKGLNDEKQMRSDWWLLPLATGSERVKNE 183

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VAK+L R++IGIE ++ YI
Sbjct: 184 NGDKAHSTQKPEALLYRVILSSSNPGDVVLDPFFGSGTTGVVAKRLHRNWIGIEKEKKYI 243

Query: 259 DIATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISAT 315
            IA KRI +VQP         V +  ++ P+V F++LVE G +QPGQ L         AT
Sbjct: 244 QIAQKRIDAVQPEMFDAATFDVKSKAKSAPKVEFSVLVEHGYVQPGQRLFFGKDKTKVAT 303

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR--KEL 372
           +  D  L +     GSIH+ G+    +  CNGW  W+ E  G++  +  +R   R  K L
Sbjct: 304 IKPDSRLRTADGFEGSIHQAGSHYMNNAPCNGWEHWFIEVDGQMIGLGEVREKFRVDKGL 363

Query: 373 YN 374
           YN
Sbjct: 364 YN 365


>gi|320161362|ref|YP_004174586.1| putative modification methylase [Anaerolinea thermophila UNI-1]
 gi|319995215|dbj|BAJ63986.1| putative modification methylase [Anaerolinea thermophila UNI-1]
          Length = 368

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 197/351 (56%), Positives = 254/351 (72%), Gaps = 6/351 (1%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++I++G+   +L  LP +S+DLIFADPPYNLQL   LYRPD S VDAV DSWD+F+SF 
Sbjct: 10  LNQILQGDCRQILPSLPDQSIDLIFADPPYNLQLQQDLYRPDRSRVDAVNDSWDQFTSFA 69

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD F+R+WL  CRRVLK +G +WVIG+YHNIFR+GT+LQ+L FWILND+VW KSNPMPN
Sbjct: 70  EYDEFSRSWLTECRRVLKDDGAIWVIGTYHNIFRLGTILQDLGFWILNDVVWIKSNPMPN 129

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG RF NAHETLIWA  S +A  YTFN+ A+KA NED+QMRSDW IPICSG+ER+R   
Sbjct: 130 FRGVRFTNAHETLIWAVKSRRA-NYTFNHHAMKALNEDLQMRSDWYIPICSGTERIR-IH 187

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K+H TQKPEALL RI++++T+PGD+ILDPFFG+GT+GAVA++L R++IGIE +  YI+
Sbjct: 188 GKKVHSTQKPEALLYRIILATTRPGDVILDPFFGTGTTGAVARRLGRNWIGIEKEPRYIE 247

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISATVCA 318
           +A +RI  ++P     L +    R + R+ F  LVE+ L+QPGQIL  +    I A V +
Sbjct: 248 LARQRIEQIEPYPQQALALPVRSR-KSRLPFGRLVEQNLVQPGQILFFDRNPEIRAVVLS 306

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYF-EKLGELHSINTLRILV 368
           DG L      GSIH    K+ G    NGW  W+F ++ G    I+ LR   
Sbjct: 307 DGHLSVNGWKGSIHMTAEKICGHP-TNGWERWFFLDEQGIFQPISILRQKY 356


>gi|127456|sp|P20590|MTH1_HAEIN RecName: Full=Modification methylase HinfI; Short=M.HinfI; AltName:
           Full=Adenine-specific methyltransferase HinfI
 gi|148945|gb|AAA24986.1| methylase [Haemophilus influenzae]
          Length = 359

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 156/356 (43%), Positives = 237/356 (66%), Gaps = 2/356 (0%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           + +I ++ + I+KG+ I  L+ +P +S+DLIFADPPY +Q  G+L R +      V D W
Sbjct: 3   KENINDFLNTILKGDCIEKLKTIPNESIDLIFADPPYFMQTEGKLLRTNGDEFSGVDDEW 62

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DKF+ F  YD+F   WL  C+R+LK  G++WVIGS+ NI+RIG ++QNL+FWILND++W 
Sbjct: 63  DKFNDFVEYDSFCELWLKECKRILKSTGSIWVIGSFQNIYRIGYIMQNLDFWILNDVIWN 122

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP+PNF G RF NAHET++W S   K   +TFNY  +K  N++ Q RS W + +C+G 
Sbjct: 123 KTNPVPNFGGTRFCNAHETMLWCSKCKK-NKFTFNYKTMKHLNQEKQERSVWSLSLCTGK 181

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ER+++++G+K H TQKPE+LL ++++SS+KP D++LDPFFG+GT+GAVAK L R++IGIE
Sbjct: 182 ERIKDEEGKKAHSTQKPESLLYKVILSSSKPNDVVLDPFFGTGTTGAVAKALGRNYIGIE 241

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI 312
            +Q YID+A KR+  ++P  N  + +L+ +   P+V    L+E   ++ GQ L +   N 
Sbjct: 242 REQKYIDVAEKRLREIKPNPND-IELLSLEIKPPKVPMKTLIEADFLRVGQTLFDKNENA 300

Query: 313 SATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
              V  DG +    E  SIH++ AK       NGW+++Y  +     ++++LR   
Sbjct: 301 ICIVTQDGNVKDNEETLSIHKMSAKYLNKTNNNGWDYFYLFRNNNFITLDSLRYEY 356


>gi|255603684|ref|XP_002538097.1| Modification methylase CcrMI, putative [Ricinus communis]
 gi|223513836|gb|EEF24286.1| Modification methylase CcrMI, putative [Ricinus communis]
          Length = 311

 Score =  352 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 188/294 (63%), Positives = 226/294 (76%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7   TIIQGDCIEAMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILND++WRK+NPMPNF+
Sbjct: 67  DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDVIWRKTNPMPNFK 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW IP+C+G ER++  DG+
Sbjct: 127 GTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADGQ 186

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + +YI+ A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYIEHA 246

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
             RIA V P+   +L +   KR EPRV F  +VE GL+ PG  L  A+G  +A 
Sbjct: 247 RTRIAQVTPIAPQDLEMTGSKRAEPRVPFGAIVENGLLHPGDTLYCAKGAHAAK 300


>gi|260495302|ref|ZP_05815429.1| DNA methylase [Fusobacterium sp. 3_1_33]
 gi|260197080|gb|EEW94600.1| DNA methylase [Fusobacterium sp. 3_1_33]
          Length = 357

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 175/354 (49%), Positives = 245/354 (69%), Gaps = 2/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI KG+SI VL+K+P++SVD IFADPPY +Q  G+L R D +  + V D WDKF +F+ 
Sbjct: 4   NKIFKGDSIEVLKKIPSESVDFIFADPPYYMQTEGELLRTDGTKFNGVEDEWDKFENFQD 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F++ WL  CRRVLK NGT+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K+NP+PNF
Sbjct: 64  YDNFSKKWLGECRRVLKKNGTIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKKTNPVPNF 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G+RF N+HET++W S   K+   TFNY  +K  N D Q +S W IP+C+G+ERL++++G
Sbjct: 124 SGKRFCNSHETILWCSKDKKS-KITFNYKTMKYLNGDKQEKSVWEIPLCTGNERLKDEEG 182

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLH TQKPE LL +IL+S TKP DI+LDPFFG+GT+GAVA +  R++IGIE ++ YI  
Sbjct: 183 NKLHSTQKPEKLLYKILISMTKPNDIVLDPFFGTGTTGAVAVETGRNYIGIEREEKYIKA 242

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIAS +      +T L  +   P+V    LVE+G ++  Q+L N+ G    TV ++G
Sbjct: 243 AEKRIAS-KIYQKNMITELLLEVKPPKVPLKKLVEKGYLKENQVLYNSLGEAKVTVLSNG 301

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
            +  G E  SIH++ AK+      NGW+++Y    G+L  +N LR    KE+ N
Sbjct: 302 DVFDGNEKLSIHKMSAKILNKTNNNGWDYFYVMNNGKLIPLNDLRYQYDKEVNN 355


>gi|256027628|ref|ZP_05441462.1| adenine specific DNA methyltransferase (HINFIM) [Fusobacterium sp.
           D11]
 gi|289765586|ref|ZP_06524964.1| methylase [Fusobacterium sp. D11]
 gi|289717141|gb|EFD81153.1| methylase [Fusobacterium sp. D11]
          Length = 357

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 175/354 (49%), Positives = 244/354 (68%), Gaps = 2/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI KG+SI VL+K+P++SVD IFADPPY +Q  G+L R D +  + V D WDKF +F+ 
Sbjct: 4   NKIFKGDSIEVLKKIPSESVDFIFADPPYYMQTEGELLRTDGTKFNGVEDEWDKFENFQD 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F++ WL  CRRVLK NGT+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K+NP+PNF
Sbjct: 64  YDNFSKKWLGECRRVLKKNGTIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKKTNPVPNF 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G+RF N+HET++W S   K+   TFNY  +K  N D Q +S W IP+C+G+ERL++++G
Sbjct: 124 SGKRFCNSHETILWCSKDKKS-KITFNYKTMKYLNGDKQEKSVWEIPLCTGNERLKDEEG 182

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLH TQKPE LL +IL+S TKP DI+LDPFFG+GT GAVA +  R++IGIE ++ YI  
Sbjct: 183 NKLHSTQKPEKLLYKILISMTKPNDIVLDPFFGTGTIGAVAVETGRNYIGIEREEKYIKA 242

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIAS +      +T L  +   P+V    LVE+G ++  Q+L N+ G    TV ++G
Sbjct: 243 AEKRIAS-KIYQKNMITELLLEVKPPKVPLKKLVEKGYLKENQVLYNSLGEAKVTVLSNG 301

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
            +  G E  SIH++ AK+      NGW+++Y    G+L  +N LR    KE+ N
Sbjct: 302 DVFDGNEKLSIHKMSAKILNKTNNNGWDYFYVMNNGKLIPLNDLRYQYDKEVNN 355


>gi|237743216|ref|ZP_04573697.1| modification methylase HinfI [Fusobacterium sp. 7_1]
 gi|229433512|gb|EEO43724.1| modification methylase HinfI [Fusobacterium sp. 7_1]
          Length = 357

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 174/354 (49%), Positives = 242/354 (68%), Gaps = 2/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI KG+SI VL+K+P++SVD IFADPPY +Q  G+L R D +  + V D WDKF +F+ 
Sbjct: 4   NKIFKGDSIEVLKKIPSESVDFIFADPPYYMQTEGELLRIDGTKFNGVEDEWDKFENFQD 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F++ WL  CRRVLK NGT+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K+NP+PNF
Sbjct: 64  YDNFSKKWLGECRRVLKKNGTIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKKTNPVPNF 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G+RF N+HET++W S   K+   TFNY  +K  N D Q +S W IP+C+G+ERL++++G
Sbjct: 124 SGKRFCNSHETILWCSKDKKS-KITFNYKTMKYLNGDKQEKSVWEIPLCTGNERLKDEEG 182

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLH TQKPE LL +IL+S TKP DI+LDPFFG+GT+GAVA +  R++IGIE ++ YI  
Sbjct: 183 NKLHSTQKPEKLLYKILISMTKPNDIVLDPFFGTGTTGAVAVETGRNYIGIEREEKYIKA 242

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIAS +      +T L  +   P+V    LVE+G ++  Q L N+ G     V ++G
Sbjct: 243 AEKRIAS-KIYQKNMITELLLEVKPPKVPLKKLVEKGYLKENQALYNSLGEAKVKVLSNG 301

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
            +  G E  SIH++ AK+      NGW+++Y    G+L  +N LR    KE  N
Sbjct: 302 DVFDGNEKLSIHKMSAKILNKTNNNGWDYFYVMNNGKLIPLNDLRYQYAKEFNN 355


>gi|294785907|ref|ZP_06751195.1| modification methylase CcrM [Fusobacterium sp. 3_1_27]
 gi|294487621|gb|EFG34983.1| modification methylase CcrM [Fusobacterium sp. 3_1_27]
          Length = 370

 Score =  340 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 167/358 (46%), Positives = 243/358 (67%), Gaps = 2/358 (0%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
             I ++ + II+G++I  L++LP +S+D IFADPPY +Q  G+L R D +    V D WD
Sbjct: 1   MDINKFINTIIEGDTIKNLKRLPDESIDFIFADPPYYMQTEGELLRVDGTKFKGVEDKWD 60

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           KF  F+ YD FT+ WL  C+RVLK + T+ VIGS+ NI+R+G ++Q+L +WILNDI+W+K
Sbjct: 61  KFKDFKDYDNFTKKWLKECKRVLKKDATIAVIGSFQNIYRVGNIMQDLGYWILNDIIWKK 120

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NP+PNF G+RF N+HET++W S + K+   TFNY  +K  N + Q +S W I +C+G+E
Sbjct: 121 TNPVPNFSGKRFCNSHETILWCSKNKKS-KITFNYKTMKYLNNEKQEKSIWEISLCTGNE 179

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           RL++++G KLH +QKPE LL ++L+S+TKP DIILDPFFG+GT+GAVAK++ R++IGIE 
Sbjct: 180 RLKDENGNKLHSSQKPEKLLYKLLISATKPKDIILDPFFGTGTTGAVAKEIGRNYIGIEK 239

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
           ++ Y++ A KRIAS        +T LT +   P+V    L+E+G +Q  Q L N+ G   
Sbjct: 240 EKVYVEAAEKRIASKN-YQRSLITELTLEEKPPKVPVKKLLEKGYLQKNQELYNSLGERK 298

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
             V  DG +  G E  SIH++ AK+      NGW+++Y  + G L S+N LR    KE
Sbjct: 299 GIVLEDGKIFDGIETLSIHKMSAKLLNKANNNGWDYFYIIEKGNLISLNDLRYRYDKE 356


>gi|237745127|ref|ZP_04575608.1| modification methylase HinfI [Fusobacterium sp. 7_1]
 gi|229432356|gb|EEO42568.1| modification methylase HinfI [Fusobacterium sp. 7_1]
          Length = 370

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 168/358 (46%), Positives = 243/358 (67%), Gaps = 2/358 (0%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
             I ++ + II+G++I  L++LP +S+D IFADPPY +Q  G+L R D +    V D WD
Sbjct: 1   MDINKFINTIIEGDTIKNLKRLPDESIDFIFADPPYYMQTEGELLRVDGTKFKGVEDKWD 60

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           KF  F+ YD FT+ WL  C+RVLK + T+ VIGS+ NI+R+G ++Q+L +WILNDI+W+K
Sbjct: 61  KFKDFKDYDDFTKKWLKECKRVLKKDATIAVIGSFQNIYRVGNIMQDLGYWILNDIIWKK 120

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NP+PNF G+RF N+HET++W S + K+   TFNY  +K  N + Q +S W I +C+G+E
Sbjct: 121 TNPVPNFSGKRFCNSHETILWCSKNKKS-KITFNYKTMKYLNNEKQEKSIWEISLCTGNE 179

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           RL++K+G KLH +QKPE LL ++L+S+TKP DIILDPFFG+GT+GAVAK++ R++IGIE 
Sbjct: 180 RLKDKNGNKLHSSQKPEKLLYKLLISATKPKDIILDPFFGTGTTGAVAKEIGRNYIGIEK 239

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
           ++ Y++ A KRIAS        +T LT +   P+V    L+E+G +Q  Q L N+ G   
Sbjct: 240 EKVYVEAAEKRIASKN-YQRSLITELTLEEKPPKVPVKKLLEKGYLQKNQELYNSLGEKK 298

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
             V  DG +  G E  SIH++ AK+      NGW+++Y  + G L S+N LR    KE
Sbjct: 299 GIVLEDGNIFDGIETLSIHKMSAKLLNKTNNNGWDYFYIIEKGNLISLNDLRYRYDKE 356


>gi|283953787|ref|ZP_06371318.1| hypothetical protein C414_000010156 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794828|gb|EFC33566.1| hypothetical protein C414_000010156 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 359

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 160/354 (45%), Positives = 226/354 (63%), Gaps = 2/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD I +GN + +L+ +P KS+DLIFADPPY +Q  G+L R +  +   V D WDKF S +
Sbjct: 3   KDIIFQGNCLEILKTIPDKSIDLIFADPPYFMQTQGELLRTNGEVFSGVNDDWDKFESLK 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD F + WL  CRR+LK + ++WVIGS+ NIFR+G ++Q+L FWILNDI+W K NP+PN
Sbjct: 63  AYDDFCKIWLSECRRILKDDASIWVIGSFQNIFRLGYIMQDLGFWILNDIIWNKPNPVPN 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF N+HETLIW S    +  YTFNY  +K  N + Q +S W I IC G+ERL+  D
Sbjct: 123 FKGTRFCNSHETLIWCSKHKNS-KYTFNYKTMKFLNNNKQEKSIWNIGICIGNERLKGID 181

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K+H TQKPE LL +I++SSTK GD+ILDPFFG+GT+GA+AKKL R +IGIE ++ Y+ 
Sbjct: 182 GKKIHSTQKPEILLEKIILSSTKKGDLILDPFFGTGTTGAIAKKLGRYYIGIEQEKFYVK 241

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           IA  RI  +  + N  +T    +   P+V+   L+  G +   +   +   N    +   
Sbjct: 242 IAESRIRQINIIDNE-ITRNELETKPPKVSLEELLNAGFLSENEKFYDKNKNYICYLVNG 300

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
             +    E+ SIH++ AK    E  NGW+++Y  K     SI++LR   +  + 
Sbjct: 301 NKVSDENEILSIHKMAAKYLNKENHNGWSYFYIFKNENFISIDSLRYEYKNFIN 354


>gi|237741481|ref|ZP_04571962.1| modification methylase HinfI [Fusobacterium sp. 4_1_13]
 gi|260497889|ref|ZP_05816008.1| DNA methylase [Fusobacterium sp. 3_1_33]
 gi|229429129|gb|EEO39341.1| modification methylase HinfI [Fusobacterium sp. 4_1_13]
 gi|260196555|gb|EEW94083.1| DNA methylase [Fusobacterium sp. 3_1_33]
          Length = 370

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 168/358 (46%), Positives = 244/358 (68%), Gaps = 2/358 (0%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
             I ++ + II+G++I  L++LP +S+D IFADPPY +Q  G+L R D +    V D WD
Sbjct: 1   MDINKFINTIIEGDTIKNLKRLPDESIDFIFADPPYYMQTEGELLRVDGTKFKGVEDKWD 60

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           KF  F+ YD FT+ WL  C+RVLK + T+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K
Sbjct: 61  KFKDFKDYDDFTKKWLKECKRVLKKDATIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKK 120

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NP+PNF G+RF N+HET++W S + K+   TFNY  +K  N + Q +S W I +C+G+E
Sbjct: 121 TNPVPNFSGKRFCNSHETILWCSKNKKS-KITFNYKTMKYLNNEKQEKSIWEISLCTGNE 179

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           RL++++G KLH +QKPE LL ++L+S+TKP DIILDPFFG+GT+GAVAK++ R++IGIE 
Sbjct: 180 RLKDENGNKLHSSQKPEKLLYKLLISATKPKDIILDPFFGTGTTGAVAKEIGRNYIGIEK 239

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
           ++ Y++ A KRIAS        +T LT +   P+V    L+E+G +Q  Q L N+ G   
Sbjct: 240 EKVYVEAAEKRIASKN-YQRSLVTELTLEEKPPKVPVKKLLEKGYLQKNQELYNSLGERK 298

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
             V  DG +  G E+ SIH++ AK+      NGW+++Y  + G L S+N LR    KE
Sbjct: 299 GIVLEDGNIFDGIEILSIHKMSAKLLNKANNNGWDYFYIIEKGNLISLNDLRYRYNKE 356


>gi|296126404|ref|YP_003633656.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
 gi|296018220|gb|ADG71457.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
          Length = 360

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 166/353 (47%), Positives = 232/353 (65%), Gaps = 2/353 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I + K+ IIKG+++  L+K+P  S+DLIFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   IDDIKNTIIKGDALEELKKIPDDSIDLIFADPPYYMQTEGELLRTNGTKFSGVDDEWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            +FE YD F+  WL  CRRVLK  G++WVIGS+ NIFRIG ++Q+L FWILNDI+W K+N
Sbjct: 64  KNFEDYDNFSINWLKECRRVLKITGSIWVIGSFQNIFRIGKIMQDLGFWILNDIIWSKTN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G RF NAHETLIW     K   YTFNY  +K  N D Q +S W I +C+G+ERL
Sbjct: 124 PVPNFGGTRFCNAHETLIWCGK-NKNTKYTFNYKTMKHLNNDKQDKSIWNISLCTGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++KDG K+H TQKPE LL ++++SS+KP DI+LDPFFG+GT+GAVAK+L R++IGIE + 
Sbjct: 183 KDKDGNKVHSTQKPEELLFKVILSSSKPNDIVLDPFFGTGTTGAVAKRLSRNYIGIERED 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A  RI +        L  L  +   P+V    L+E+G ++  Q+L + +G+    
Sbjct: 243 KYIYYAKDRIKNTNVEMTD-LINLDYEVKPPKVPIKNLIEKGYLKVNQVLYSKKGDEVCK 301

Query: 316 VCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           +  +G + +     SIH++ AK+      NGWN++Y     +  SI+ LR + 
Sbjct: 302 LNENGNVENELGNFSIHQMSAKLQNLSKYNGWNYFYIYYKDKFISIDELRYIY 354


>gi|322379181|ref|ZP_08053573.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
           HS1]
 gi|322379987|ref|ZP_08054255.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
           HS5]
 gi|321147576|gb|EFX42208.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
           HS5]
 gi|321148383|gb|EFX42891.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
           HS1]
          Length = 357

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 154/349 (44%), Positives = 232/349 (66%), Gaps = 3/349 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I++GN + +L+ LP++SVD IFADPPY +Q  G+L R   +  + V ++WD+F  F  
Sbjct: 5   NTILQGNCLDILKDLPSQSVDFIFADPPYFMQTQGELLRVGGARFEGVQETWDQFKDFAH 64

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+  WL  CRR+LK  G++ VIGS+ NI+R+G ++QNL FWI+NDI+W K+NP+PNF
Sbjct: 65  YDDFSCLWLAQCRRLLKNRGSICVIGSFQNIYRLGYLMQNLGFWIINDIIWHKTNPVPNF 124

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G R  NAHE ++W +   KA  +TFNY  LK+ N++ Q +S W IP+C+GSERL+N++G
Sbjct: 125 TGSRLCNAHEIILWCAKDKKA-SFTFNYKTLKSLNQNKQEKSVWFIPLCTGSERLKNQEG 183

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE LL ++++ +TKP D+ILDPFFG+GT+GA+AKKL RSF+GIE  + YI  
Sbjct: 184 NKLHPTQKPEQLLEKLILMATKPHDLILDPFFGTGTTGAMAKKLGRSFLGIEKNEIYIKA 243

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI  +    +  +  L  ++  P+V+  +L++ G ++ G  L +        V ADG
Sbjct: 244 AQRRIEQITISQD-AMAYLELEKKPPKVSMKVLIDTGYLKIGDKLYSPDYQEKCQVLADG 302

Query: 321 TLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
            +     ++ SIH++ AK+      NGW+++Y +   +  S+N LR   
Sbjct: 303 KVCDASGQVLSIHKMSAKILNKINHNGWDYFYIKDGMQFISLNQLRYCY 351


>gi|261838917|gb|ACX98682.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori 52]
          Length = 359

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 163/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  DSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P+V  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLGLETKPPKVPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE
Sbjct: 302 VLENGQVRDNENHETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358


>gi|317013139|gb|ADU83747.1| adenine specific DNA methyltransferase [Helicobacter pylori
           Lithuania75]
          Length = 359

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 162/357 (45%), Positives = 223/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SFE YD F   WL  C+R+LK NG++ VIGS+HNIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFHNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   TFNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPE LL +I++S+TKP DI+LDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEVLLKKIILSATKPKDIVLDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+   +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNDTR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358


>gi|332672842|gb|AEE69659.1| modification methylase BabI [Helicobacter pylori 83]
          Length = 359

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 163/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358


>gi|15612336|ref|NP_223989.1| type II DNA modification (methyltransferase [Helicobacter pylori
           J99]
 gi|4155885|gb|AAD06856.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 359

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 165/357 (46%), Positives = 224/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SFE YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDIVW KSN
Sbjct: 64  GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIVWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   TFNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDVQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMDRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ S +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNSTR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +++
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358


>gi|308064128|gb|ADO06015.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori Sat464]
          Length = 359

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 163/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLVLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358


>gi|217034428|ref|ZP_03439841.1| hypothetical protein HP9810_11g10 [Helicobacter pylori 98-10]
 gi|216943098|gb|EEC22572.1| hypothetical protein HP9810_11g10 [Helicobacter pylori 98-10]
          Length = 359

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 163/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDTQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358


>gi|207091630|ref|ZP_03239417.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 359

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 161/357 (45%), Positives = 223/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   TFNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DI+LDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSTTKPKDIVLDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L +        
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358


>gi|254779898|ref|YP_003058004.1| Type II m6A methylase [Helicobacter pylori B38]
 gi|254001810|emb|CAX30048.1| Type II m6A methylase [Helicobacter pylori B38]
          Length = 359

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 161/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD +FADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFVFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+HNIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFHNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   TFNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DI+LDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDARGKKVHSTQKPEALLKKIILSATKPKDIVLDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L +        
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358


>gi|108563725|ref|YP_628041.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
 gi|107837498|gb|ABF85367.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
          Length = 359

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 165/357 (46%), Positives = 224/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SFE YDAF   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFEEYDAFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ S +   +  +T L  +   P++  +LL+ + L++ G  L +        
Sbjct: 243 FYIKEAAKRLNSAR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNRTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358


>gi|261837505|gb|ACX97271.1| type II m6A methylase [Helicobacter pylori 51]
          Length = 359

 Score =  325 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 162/357 (45%), Positives = 223/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSVTKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358


>gi|317014745|gb|ADU82181.1| type II DNA modification (methyltransferase) [Helicobacter pylori
           Gambia94/24]
          Length = 359

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 164/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SFE YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDIVW KSN
Sbjct: 64  GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIVWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   TFNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAIKRLNNAR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +++
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358


>gi|208435249|ref|YP_002266915.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
 gi|208433178|gb|ACI28049.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
          Length = 359

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 164/357 (45%), Positives = 225/357 (63%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+HNIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFHNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   TFNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPE LL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEVLLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  ATKR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEATKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNRTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358


>gi|307638026|gb|ADN80476.1| adenine specific DNA methyltransferase [Helicobacter pylori 908]
 gi|325996628|gb|ADZ52033.1| adenine specific DNA methyltransferase [Helicobacter pylori 2018]
 gi|325998218|gb|ADZ50426.1| adenine specific DNA methyltransferase [Helicobacter pylori 2017]
          Length = 359

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 165/357 (46%), Positives = 224/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNAIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SFE YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDIVW KSN
Sbjct: 64  GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIVWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   TFNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ S +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNSAR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +++
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358


>gi|308062636|gb|ADO04524.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori Cuz20]
          Length = 359

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 162/357 (45%), Positives = 223/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   +FNY  +K  N   Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNGKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLVLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358


>gi|297380534|gb|ADI35421.1| Modification methylase [Helicobacter pylori v225d]
          Length = 359

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 163/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAEKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358


>gi|188528141|ref|YP_001910828.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori Shi470]
 gi|188144381|gb|ACD48798.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori Shi470]
          Length = 359

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 163/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLVLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358


>gi|317179845|dbj|BAJ57631.1| adenine specific DNA methyltransferase [Helicobacter pylori F32]
          Length = 359

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 161/357 (45%), Positives = 223/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   +FNY  +K  N   Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNGKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRHFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKCLNKANHNGWKFFYAYYQNQFLLLDELRYICQKE 358


>gi|308183462|ref|YP_003927589.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori PeCan4]
 gi|308065647|gb|ADO07539.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori PeCan4]
          Length = 359

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 162/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ S +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNSTR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +++
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358


>gi|317176855|dbj|BAJ54644.1| adenine specific DNA methyltransferase [Helicobacter pylori F16]
          Length = 359

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 162/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSSKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358


>gi|15645965|ref|NP_208144.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori 26695]
 gi|2314521|gb|AAD08395.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori 26695]
          Length = 359

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 162/357 (45%), Positives = 223/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDYWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YDAF   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDAFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +    FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVAFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L +        
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358


>gi|317181339|dbj|BAJ59123.1| adenine specific DNA methyltransferase [Helicobacter pylori F57]
          Length = 359

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 161/357 (45%), Positives = 223/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI    KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEVAKRLNNTR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358


>gi|315453389|ref|YP_004073659.1| adenine specific DNA methylase [Helicobacter felis ATCC 49179]
 gi|315132441|emb|CBY83069.1| adenine specific DNA methylase [Helicobacter felis ATCC 49179]
          Length = 351

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 167/349 (47%), Positives = 232/349 (66%), Gaps = 3/349 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            DKI++GN + +L  LP++SVDLI ADPPY +Q  G L R +  +   V  +WD+F S +
Sbjct: 2   LDKILQGNCLELLPTLPSESVDLIIADPPYFMQTQGDLLRDNGEVFMGVRAAWDQFESLQ 61

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD+F  AWL  CRRVLK +G++WV+GS+ NI+R+G ++QNL FWILNDI+W K NP+PN
Sbjct: 62  AYDSFCLAWLSECRRVLKAHGSIWVMGSFQNIYRLGYLMQNLGFWILNDIIWAKPNPVPN 121

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG RF NAHE+L+W +   K+  YTFNY  +KA N + Q RS W I IC G+ERL+  D
Sbjct: 122 FRGSRFCNAHESLLWCAK-DKSARYTFNYKTMKALNHNKQERSIWHISICMGAERLKGAD 180

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            +KLHPTQKP+ALL +I++SS+KPGD+ILDPFFG+GT+GA+AKK +R F+GIE    ++ 
Sbjct: 181 RKKLHPTQKPQALLEKIILSSSKPGDLILDPFFGTGTTGAIAKKFKRHFLGIEQDPLFVQ 240

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            ATKRIA++ PL N  +   + +   P+V+   L + G +Q  Q   + + N    +  D
Sbjct: 241 EATKRIANITPLSNPFIE-ASLEIKPPKVSLKQLCKAGFLQEKQKFYDKEQNYICYLLED 299

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
             L    E  SIH++ AK    +  NGW ++Y    GE  S++ LR   
Sbjct: 300 -RLHDHQEHLSIHQMAAKHLHKKNHNGWTYFYVFWQGEFVSVDLLRYAY 347


>gi|315586043|gb|ADU40424.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 35A]
          Length = 359

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 160/357 (44%), Positives = 223/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q   +L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTERELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +   +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLDLEAKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358


>gi|315453204|ref|YP_004073474.1| Adenine specific DNA methyltransferase [Helicobacter felis ATCC
           49179]
 gi|315132256|emb|CBY82884.1| Adenine specific DNA methyltransferase [Helicobacter felis ATCC
           49179]
          Length = 356

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 162/354 (45%), Positives = 234/354 (66%), Gaps = 3/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I++G+  ++L+ L + SVD IFADPPY +Q +G+L R   +    V + WDKF  F  
Sbjct: 3   NTILQGDCAALLKTLSSSSVDFIFADPPYFMQTSGELLRVGGTKFAGVAEEWDKFKDFAH 62

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD+F  AWL  C+RVLK NG++ VIGS+ NI+R+G ++Q+L FW++NDI+W KSNP+PNF
Sbjct: 63  YDSFCEAWLTECKRVLKTNGSICVIGSFQNIYRLGALMQDLGFWVINDIIWAKSNPVPNF 122

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G R  NAHETL+W +   KA  +TFNY  LKA N D Q +S W IP+C G+ERL++K G
Sbjct: 123 NGSRLCNAHETLLWCAKDKKA-SFTFNYKTLKALNGDKQEKSIWEIPLCVGAERLKDKQG 181

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE LL ++L+ +T+PGD++LDPFFG+GT+GAVAK+L R+F+GIE   +YI  
Sbjct: 182 HKLHPTQKPEKLLEKLLLMATRPGDLVLDPFFGTGTTGAVAKRLGRNFLGIEQDSNYIQA 241

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +  P+     + L  ++  P+V    LV+ G +Q GQ+L +  G     V   G
Sbjct: 242 ALARIKNT-PIKMNAFSRLECEKKPPKVPMKTLVDLGYLQVGQVLCSPSGVEQCQVLQSG 300

Query: 321 TLIS-GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
            +      + SIH++ AK+      NGW+++Y +  G+L ++N LR L  K+ +
Sbjct: 301 QVQDSSGAVLSIHKMSAKILKKINHNGWDYFYTKHEGQLTALNDLRYLYDKDNH 354


>gi|330813680|ref|YP_004357919.1| modification methylase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486775|gb|AEA81180.1| modification methylase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 350

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 178/299 (59%), Positives = 233/299 (77%), Gaps = 2/299 (0%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           +NS   +K+KI++GNSI +L+K+P ++ DL+FADPPYNLQL+  L RPD+S VDAV D W
Sbjct: 2   KNSKNPYKNKILQGNSIEILKKIPDETFDLVFADPPYNLQLDKSLERPDNSKVDAVDDQW 61

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D+FSSF+AYD FT  WL  CRRVLK NGT+WVIGSYHNIFR+G  +Q+LNFWILND+VW 
Sbjct: 62  DQFSSFKAYDLFTNQWLRECRRVLKKNGTIWVIGSYHNIFRVGKEIQDLNFWILNDVVWN 121

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K NPMPNF+G RF NAHETLIWA+   K+  YTFNY++LK  N+D Q+RSDW + ICSG+
Sbjct: 122 KRNPMPNFKGTRFTNAHETLIWAAKEQKS-KYTFNYNSLKCFNDDKQLRSDWELAICSGN 180

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ER + K+G K H TQKPEALL R+++S+T   D+ILDPFFG+GT+GAVAKKL R+F+GIE
Sbjct: 181 ERCK-KNGTKAHSTQKPEALLYRVILSTTNKDDLILDPFFGTGTTGAVAKKLGRNFLGIE 239

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
            ++ YI++A KRI  ++P+ +  L  +  KR E R+ F +LVE G+I+PG  L + + N
Sbjct: 240 KEKKYIEVAKKRIDKIRPIEDEYLKTIQKKRNEKRIPFGMLVESGIIEPGISLYDNKKN 298


>gi|183508442|ref|ZP_02689152.2| DNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|182675852|gb|EDT87757.1| DNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
          Length = 363

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 148/359 (41%), Positives = 212/359 (59%), Gaps = 5/359 (1%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN--GQLYRPDHSLVDAVTDSWDK 74
             +K+KI+ G +  ++++LP K+ D  F DPPY LQ N   +LYR + +  +   D WDK
Sbjct: 1   MNYKNKILVGETTLIMKELPEKTFDFCFTDPPYFLQTNENKKLYRVEGTKYEGTNDEWDK 60

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           F S E+Y  FT+ WL    R+LK +GT+ VI     I+ IG +L+ L FWI+NDI+W+KS
Sbjct: 61  FDSIESYKKFTKCWLSEVMRLLKDDGTICVISGMQTIYEIGNILKELGFWIINDIIWQKS 120

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NP PNF G R  N+HETLIWA  S  +  YTFNY   K  N   QM S W   +CSG+ER
Sbjct: 121 NPTPNFMGSRLNNSHETLIWAKKSKNS-KYTFNYKTGKYLNNGKQMGSVWNFSVCSGNER 179

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L++++G KLH TQKPE+LL RI+   TK GD++LDPF G+ T+ AVAKK  R+F  IE  
Sbjct: 180 LKDENGLKLHNTQKPESLLYRIITLFTKKGDLVLDPFGGTMTTAAVAKKTGRNFTMIEKD 239

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
           + Y+     RI ++     +       ++   RV+   ++  G  + G+   N+ G  + 
Sbjct: 240 EKYVKYGLARINNISAKIGVVENSFFDQK-PIRVSMFEMISDGYFKLGEYFINSNGEKAK 298

Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSE-TCNGWNFWYFEKLGELHSINTLRILVRKEL 372
              A+G L    E+ S+H V AK+ G E   N +N+ + E+ GE+ SIN +R   R+ L
Sbjct: 299 LAKANGWLEYQGEINSMHEVAAKMIGRERRVNAFNYLFVERDGEIISINKIRENYRQHL 357


>gi|38906136|gb|AAR27819.1| adenine DNA methyltransferase [Staphylococcus sp. L1]
          Length = 350

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 157/350 (44%), Positives = 223/350 (63%), Gaps = 5/350 (1%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS-WDKF 75
             + + I++G+ I  L+ + + S+DLIFADPPYN+Q+ G+L R + S  + V++  WDKF
Sbjct: 3   NNYINSILQGDCIEKLKLIESNSIDLIFADPPYNMQIQGELTRVNGSSFNGVSNESWDKF 62

Query: 76  SSFEAYDAFTRAWLLACRRVLK-PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            S +AY  F R WL+ C+R+LK  N ++W+IGSY NI  IG +LQ L FW++NDI+W+KS
Sbjct: 63  DSIKAYKDFCRKWLIECQRILKSKNSSIWIIGSYQNIHIIGDLLQELGFWLINDIIWKKS 122

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NP PNFRG +F NA ETL+WA+PS K   YTFNY  +K  N   QM S W IP+ SGSER
Sbjct: 123 NPTPNFRGTKFTNAQETLLWATPSKKT-KYTFNYKTMKNINNGKQMTSIWKIPVASGSER 181

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L++ +G KLH TQKPE LL  I++SSTK GD ILDPF G+GT+  ++KKL R++IGIE  
Sbjct: 182 LKDVEGNKLHQTQKPEKLLYNIIISSTKKGDTILDPFLGTGTTATISKKLGRNYIGIEQD 241

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
           + YI  A +RI +   + +  +  +  K+   RV F  LVE G I   + +        A
Sbjct: 242 KKYIHYAEQRIKNQVVIDDDYVNAVFDKK-LIRVPFKKLVEEGFIDKNEYIYFNNTEEYA 300

Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
            +  D  L+   +  SIH +   + G E  NGWN+WY ++  +++   +L
Sbjct: 301 VISDDKELLYNGK-HSIHSLAGILKGLERANGWNYWYVKRNNKIYFYRSL 349


>gi|294155798|ref|YP_003560182.1| adenine-specific DNA modification methyltransferase [Mycoplasma
           crocodyli MP145]
 gi|291599976|gb|ADE19472.1| adenine-specific DNA modification methyltransferase [Mycoplasma
           crocodyli MP145]
          Length = 375

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 149/371 (40%), Positives = 213/371 (57%), Gaps = 16/371 (4%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E K+ +I  +SI  ++ L   S+DLIFADPPY ++  G L R + +  D   D WDKF+
Sbjct: 1   MELKNILINDDSIEYMKSLDENSIDLIFADPPYWMRTTGTLKRVEGTNFDGCNDEWDKFN 60

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S + Y  FT+ WL+ C+R+LK +G+++VIG    I+ IG ++Q L+FW++NDI+W KSNP
Sbjct: 61  SLKDYKEFTKKWLIECKRILKKDGSIFVIGGMQCIYTIGAIMQELDFWLINDIIWHKSNP 120

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------------EDVQMRSDW 184
            PNF+G R  N+HET+IWA+ S K+   TFNY   K  N            E  QM S W
Sbjct: 121 TPNFKGTRLNNSHETIIWAAKSIKS-KVTFNYKTAKELNNENIEISKFTKGERKQMGSVW 179

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
             PICSG ERL++++  KLH TQKPEALL RI+  S+K GD ILDPF G+ T+GA+AKK+
Sbjct: 180 KFPICSGLERLKDEEYNKLHSTQKPEALLYRIIAISSKIGDTILDPFAGTMTTGAMAKKM 239

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQI 304
            R+ I IE    Y     KR+   + L       +   +    V F  L+ +  ++ G  
Sbjct: 240 GRNCIMIEKDLKYFTHGKKRVDFTKMLIGDIEKSIFDNKPTK-VHFKDLISKNYLKVGDK 298

Query: 305 LTNAQGNISATVCADGTLISGTELGSIHRVGAKV--SGSETCNGWNFWYFEKLGELHSIN 362
            TN   +  AT+  DG L    E+  IH   AK     ++  NG+++WY  +   L  +N
Sbjct: 299 FTNLSNDDYATLRDDGKLYYNNEVLDIHTCAAKFANKNADRINGFDYWYVVRNNHLVFLN 358

Query: 363 TLRILVRKELY 373
            +R   RK++ 
Sbjct: 359 DIREKARKDIE 369


>gi|313678807|ref|YP_004056547.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           bovis PG45]
 gi|312950107|gb|ADR24702.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           bovis PG45]
          Length = 374

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 146/366 (39%), Positives = 211/366 (57%), Gaps = 17/366 (4%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II  + I  L++LP  S+DLIFADPPY ++ +  L R + +  + V D WDKF S E 
Sbjct: 7   NIIINADCIDALKQLPDNSIDLIFADPPYWMRTSNTLLRVEGTKFNGVEDEWDKFESNED 66

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  FT+ WL  C RVLK NG+ WVIG    I+ IG ++Q L FWI+ND++W K+NP PNF
Sbjct: 67  YAKFTKNWLSECYRVLKKNGSFWVIGGMQCIYTIGGIMQELGFWIINDVIWHKTNPTPNF 126

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN---------EDVQMRSDWLIPICSG 191
           +G R QN+HETLIWA+ +  +  YTFNY   K  N            Q+ S W I + +G
Sbjct: 127 KGTRLQNSHETLIWATKNQ-SSKYTFNYKTAKELNINVADYNKGNRKQLGSVWSISVVNG 185

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +ERL++ +G KLH TQKPE LL +I+  S+K  DI+LDPF G+ T+G VAK+  R +I I
Sbjct: 186 NERLKDNEGIKLHSTQKPEELLYKIINISSKINDIVLDPFAGTMTTGKVAKQTGRKYIMI 245

Query: 252 EMKQDYIDIATKRI-ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ- 309
           E  + Y    T RI  + + +G+IEL     K    +V    ++E   +  G+       
Sbjct: 246 EQDEKYCHYGTNRIEKTKEKIGDIELATFDIK--PLKVGLKDMIENSFLHIGEQFYLKNI 303

Query: 310 GNISATVCADGTLISGT-ELGSIHRVGAKVSGSET--CNGWNFWYFEKLGELHSINTLRI 366
            + +  + +DG L     +   IH   A++S  +    NG+++WY  +  +L SIN +R 
Sbjct: 304 NHKNVYLNSDGKLTDDNGQTLDIHSGAAQLSNKKAHRVNGFDYWYVIRENKLVSINEIRE 363

Query: 367 LVRKEL 372
           L R+ L
Sbjct: 364 LYREHL 369


>gi|257456468|ref|ZP_05621664.1| DNA methylase [Treponema vincentii ATCC 35580]
 gi|257446128|gb|EEV21175.1| DNA methylase [Treponema vincentii ATCC 35580]
          Length = 372

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 143/366 (39%), Positives = 206/366 (56%), Gaps = 19/366 (5%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
            II GN I  L+K+ A S++LIFADPPY ++++G L R + +  D   D WD +F S + 
Sbjct: 5   TIINGNCIEELKKIEANSINLIFADPPYWMRVSGVLKRVEGTDYDGCADEWDNQFESLDD 64

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  FTR WL  C RVL PNG++WVIG    I+ IG  +Q + +W++NDI+W K+NP PNF
Sbjct: 65  YIEFTRNWLKECYRVLSPNGSMWVIGGMQCIYSIGNAMQEIGYWLINDIIWYKTNPTPNF 124

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------VQMRSDWLIPI 188
            G R  N+HETLIWA+ S KA  YTF+Y   K  N D             QM S W  P+
Sbjct: 125 MGTRLNNSHETLIWATKSQKA-KYTFHYKTAKELNTDTVLVSDYEKGIRKQMGSIWRFPV 183

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           CSG+ER+++  G+KLH TQKP ALL RI+   +  GD +LDPF G+ T+GA A +  R+F
Sbjct: 184 CSGNERIKDDAGKKLHSTQKPFALLYRIVAICSNIGDTVLDPFGGTFTTGAAAIQCGRNF 243

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
           IGI+  + Y     KR++  + +    +   T      +V F  L++   + P +     
Sbjct: 244 IGIDASELYCKYGEKRLSETKEMIGN-IEKATFDIKPIKVDFIDLIKNNFLLPDEKFFLK 302

Query: 309 QGNISATVCADGTLI--SGTELGSIHRVGAKVSGSET--CNGWNFWYFEKLGELHSINTL 364
             +  A + +DG +   S   +  IH+  A +   +    NG++FWY E+  +  SI  +
Sbjct: 303 NSDSFAILKSDGKIELPSKNIVTDIHKGAAILGNKKAARVNGFDFWYVERNNKRKSIKDI 362

Query: 365 RILVRK 370
           R   RK
Sbjct: 363 REDYRK 368


>gi|291320655|ref|YP_003515920.1| modification methylase [Mycoplasma agalactiae]
 gi|290752991|emb|CBH40967.1| Modification methylase [Mycoplasma agalactiae]
          Length = 374

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 142/366 (38%), Positives = 210/366 (57%), Gaps = 17/366 (4%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II  + I  L+K+P  S+DLIFADPPY ++ +  L+R + +  + V D WDKF S + 
Sbjct: 7   NVIINADCIEALKKIPDNSIDLIFADPPYWMRTSKTLFRVEGTKFNGVEDEWDKFDSNDD 66

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  FT+ WL  C RVLKPNG+ WVIG    I+ IG ++Q+L FWI+ND++W K+NP PNF
Sbjct: 67  YVQFTKKWLSECHRVLKPNGSFWVIGGMQCIYTIGGLMQDLGFWIINDVIWHKTNPTPNF 126

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN---------EDVQMRSDWLIPICSG 191
           +G R QN+HETLIWA+ + K+  YTFNY   K  N            Q+ S W I + +G
Sbjct: 127 KGTRLQNSHETLIWATKNQKS-KYTFNYKTAKELNINVADYNKGNRKQLGSVWSISVVNG 185

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           SERL++ +G KLH TQKPE LL +I+  ++K  DI+LDPF G+ T+G +AK+  R +I I
Sbjct: 186 SERLKDNEGLKLHSTQKPEELLYKIININSKINDIVLDPFAGTMTTGKIAKQTGRKYIMI 245

Query: 252 EMKQDYIDIATKRI-ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ- 309
           E  + Y      RI  + + +G+IEL     K    +V    ++    +  G+       
Sbjct: 246 EQDEKYCHYGANRIEKTKEKIGDIELATFDIK--PLKVDLKDMINDNFLHLGEQFYLKNI 303

Query: 310 GNISATVCADGTLISGTEL-GSIHRVGAKVSGSET--CNGWNFWYFEKLGELHSINTLRI 366
            + +  + +DG L    E    IH   A +   +    NG+N+W+  +   + SI+ +R 
Sbjct: 304 NHKNVYLNSDGKLTDDNEEVHDIHSKAALLLNKKASRVNGFNYWHVMRDNRIVSIDEIRN 363

Query: 367 LVRKEL 372
           L R+ L
Sbjct: 364 LYREYL 369


>gi|148377930|ref|YP_001256806.1| modification methylase [Mycoplasma agalactiae PG2]
 gi|148291976|emb|CAL59368.1| Modification methylase [Mycoplasma agalactiae PG2]
          Length = 376

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 144/366 (39%), Positives = 212/366 (57%), Gaps = 17/366 (4%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II  + I  L+ LP  S+DLIFADPPY ++ +  L+R + +  + V D WDKF S + 
Sbjct: 7   NVIINADCIEALKVLPDNSIDLIFADPPYWMRTSKTLFRVEGTKFNGVEDEWDKFDSNDD 66

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  FT+ WL  C RVLKPNG+ WVIG    I+ IG ++Q+L FWI+ND++W K+NP PNF
Sbjct: 67  YVQFTKKWLSECHRVLKPNGSFWVIGGMQCIYTIGGLMQDLGFWIINDVIWHKTNPTPNF 126

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV---------QMRSDWLIPICSG 191
           +G R QN+HETLIWA+ + K+  YTFNY   K  N +V         Q+ S W I + +G
Sbjct: 127 KGTRLQNSHETLIWATKNQKS-KYTFNYKTAKELNINVADYNKGSRNQLGSVWSISVVNG 185

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           SERL++ +G KLH TQKPE LL +I+  S+K  DI+LDPF G+ T+G +AK+  R +I I
Sbjct: 186 SERLKDNEGLKLHSTQKPEELLYKIINISSKINDIVLDPFAGTMTTGKIAKQTGRKYIMI 245

Query: 252 EMKQDYIDIATKRI-ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ- 309
           E  + Y      RI  + + +G+IEL V   K    +V    ++    +  G+       
Sbjct: 246 EQDEKYCHYGANRIEKTKEKIGDIELAVFDIK--PLKVGLKDMINDNFLHLGEQFYLKNI 303

Query: 310 GNISATVCADGTLISGT-ELGSIHRVGAKVSGSET--CNGWNFWYFEKLGELHSINTLRI 366
            + +  + +DG L     E+  IH   A +   +    NG+++W   +   + SI+ +R 
Sbjct: 304 NHKNVYLNSDGKLTDDNGEVHDIHSKAALLLNKKASRVNGFDYWNVMRDNRIVSIDEIRN 363

Query: 367 LVRKEL 372
           L R+ L
Sbjct: 364 LYREYL 369


>gi|83682424|emb|CAJ31338.1| hypothetical protein [Helicobacter pylori]
          Length = 315

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 146/316 (46%), Positives = 197/316 (62%), Gaps = 3/316 (0%)

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           L R + +    V D WDKF SFE YD F   WL  C+R+LK NG++ VIGS+ NIFRIG 
Sbjct: 1   LKRFEGTKFQGVEDHWDKFGSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGF 60

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
            LQNL FWILNDIVW KSNP+PNF G+R  NAHETLIW +    +   TFNY  +K  N 
Sbjct: 61  HLQNLGFWILNDIVWHKSNPVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNN 119

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           D Q +S W IPIC G+ERL++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT
Sbjct: 120 DKQEKSVWQIPICMGNERLKDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGT 179

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           +GAVAK + R FIGIE    YI  A KR+ S +   +  +T L  +   P++  +LL+ +
Sbjct: 180 TGAVAKSMNRYFIGIEKDSFYIKEAAKRLNSAR-DKSDFITNLDLETKPPKIPMSLLISK 238

Query: 297 GLIQPGQILTNAQGNISATVCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKL 355
            L++ G  L ++       V  +G +        SIH++ AK       NGW F+Y    
Sbjct: 239 QLLKIGDFLYSSNKERICQVLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQ 298

Query: 356 GELHSINTLRILVRKE 371
            +   ++ LR + +++
Sbjct: 299 NQFLLLDELRYICQRD 314


>gi|218661107|ref|ZP_03517037.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli IE4771]
          Length = 252

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 171/226 (75%), Positives = 206/226 (91%)

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
             PD SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  
Sbjct: 27  TVPDQSLVDAVDDEWDQFASFEAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGAT 86

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           LQ+LNFWILNDI+WRK+NPMPNF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+D
Sbjct: 87  LQDLNFWILNDIIWRKTNPMPNFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDD 146

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           VQMRSDWL PIC+G+ERL+ +DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+
Sbjct: 147 VQMRSDWLFPICNGNERLKGEDGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTT 206

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           GAVAK+L   F+G+E +QDYID A+  IA+V+PLG  ELTV+TGK+
Sbjct: 207 GAVAKRLGCKFVGMEREQDYIDAASASIAAVEPLGKAELTVMTGKK 252


>gi|13542231|ref|NP_111919.1| adenine-specific DNA methylase [Thermoplasma volcanium GSS1]
          Length = 278

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 111/270 (41%), Positives = 163/270 (60%), Gaps = 2/270 (0%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LY 58
           M  + S  IN  + +  E KD ++ G+S+ ++ ++     DLIF DPPY LQ+  +    
Sbjct: 1   MPIEKSSRINGGKMNREEVKDSVLLGDSLEIMRRIDDCIYDLIFLDPPYYLQMTPKRLKR 60

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
             + S+   V + WD F SFEAYD+F  + L   +R++    T+W IG+YHNIFRIG ++
Sbjct: 61  WNNRSVPQTVREYWDAFPSFEAYDSFISSVLKEAKRLMSDTSTIWAIGTYHNIFRIGKIM 120

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           Q++ FWILND+VW K+NPMPN+ G RF N+ ETLIWA+   + K YT+N +  K      
Sbjct: 121 QDMGFWILNDVVWIKTNPMPNWLGVRFTNSTETLIWATKGKEQKNYTYNRNLAKEFGLGK 180

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
              + W++    G+ER+R+++ + +HP QKP  L+ RI++SSTK GD+ILDPF G GT+G
Sbjct: 181 TANNVWVMKTSRGNERVRDENRKSVHPAQKPLELMKRIILSSTKEGDLILDPFAGVGTTG 240

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
             A  L R+F  IE    Y      R +  
Sbjct: 241 VAASMLGRNFTLIEKDPVYYRAMLSRFSRF 270


>gi|14325665|dbj|BAB60568.1| DNA adenine modification methylase [Thermoplasma volcanium GSS1]
          Length = 265

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 107/257 (41%), Positives = 157/257 (61%), Gaps = 2/257 (0%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDS 71
            +  E KD ++ G+S+ ++ ++     DLIF DPPY LQ+  +      + S+   V + 
Sbjct: 1   MNREEVKDSVLLGDSLEIMRRIDDCIYDLIFLDPPYYLQMTPKRLKRWNNRSVPQTVREY 60

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WD F SFEAYD+F  + L   +R++    T+W IG+YHNIFRIG ++Q++ FWILND+VW
Sbjct: 61  WDAFPSFEAYDSFISSVLKEAKRLMSDTSTIWAIGTYHNIFRIGKIMQDMGFWILNDVVW 120

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K+NPMPN+ G RF N+ ETLIWA+   + K YT+N +  K         + W++    G
Sbjct: 121 IKTNPMPNWLGVRFTNSTETLIWATKGKEQKNYTYNRNLAKEFGLGKTANNVWVMKTSRG 180

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +ER+R+++ + +HP QKP  L+ RI++SSTK GD+ILDPF G GT+G  A  L R+F  I
Sbjct: 181 NERVRDENRKSVHPAQKPLELMKRIILSSTKEGDLILDPFAGVGTTGVAASMLGRNFTLI 240

Query: 252 EMKQDYIDIATKRIASV 268
           E    Y      R +  
Sbjct: 241 EKDPVYYRAMLSRFSRF 257


>gi|160940911|ref|ZP_02088251.1| hypothetical protein CLOBOL_05803 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436155|gb|EDP13922.1| hypothetical protein CLOBOL_05803 [Clostridium bolteae ATCC
           BAA-613]
          Length = 265

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 106/248 (42%), Positives = 152/248 (61%), Gaps = 6/248 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+  G+ + +L K+  +SVD+IFADPPY L  NG +      +V     SWD+   F+  
Sbjct: 19  KLYLGDCLELLRKMKPESVDMIFADPPYFLSNNG-ITCQGGRMVSVNKASWDEGGDFKEN 77

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            AF R W+  CRRVLKP GT+W+ G+ HNI+ IG  LQ   + I+N+I W+K+NP PN  
Sbjct: 78  HAFNRRWIRMCRRVLKPGGTIWISGTLHNIYSIGMALQQERYKIINNITWKKTNPPPNLA 137

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET++WA    K   + FNY+ +K  N   QM+         G+    ++   
Sbjct: 138 CRCFTHSTETILWARKDEKKARHLFNYEQMKQMNGGKQMKDV-----WEGNLTRPSEKWA 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKPE LL RI+++STK GD++LDPF GSGT+G V+ K  R FIGI+  ++Y+DIA
Sbjct: 193 GRHPTQKPEYLLERIILASTKKGDVVLDPFCGSGTTGVVSGKYGRQFIGIDNNEEYLDIA 252

Query: 262 TKRIASVQ 269
            +R+  +Q
Sbjct: 253 KRRLDQIQ 260


>gi|298346767|ref|YP_003719454.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236828|gb|ADI67960.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           curtisii ATCC 43063]
          Length = 274

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 99/244 (40%), Positives = 141/244 (57%), Gaps = 6/244 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I  +    L+ +  +SVD+IFADPPY L  +G +       V      WDK       
Sbjct: 17  KLILADVFDALKNIEEQSVDMIFADPPYFLSNDG-ISCSGGKQVSVNKGDWDKGLPLSEK 75

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R W+  C+RVLK +G++W+ G++HNI+ IG  L+   F ILN+I W+K NP PN  
Sbjct: 76  HEFNRHWIRECKRVLKLDGSIWISGTFHNIYSIGFALEQERFKILNNITWQKLNPPPNLG 135

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET+IWA        + FNY  +K  N+  QM+         G+   +N+   
Sbjct: 136 CRCFTHSTETVIWARKDENKAKHKFNYGLMKELNDGKQMKDV-----WQGTLTPKNEKAF 190

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKPE LL RI+++ST  GD++LDPF GSGT+  VA +L RS IGI+   +Y++IA
Sbjct: 191 GKHPTQKPEYLLERIILASTNEGDLVLDPFVGSGTTVVVANRLGRSGIGIDNNTEYLEIA 250

Query: 262 TKRI 265
            KR+
Sbjct: 251 KKRL 254


>gi|315655312|ref|ZP_07908212.1| modification methylase BabI [Mobiluncus curtisii ATCC 51333]
 gi|315490252|gb|EFU79877.1| modification methylase BabI [Mobiluncus curtisii ATCC 51333]
          Length = 266

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 143/244 (58%), Gaps = 6/244 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I  +    LE L  +S+D+IFADPPY L  +G +       V      WDK       
Sbjct: 17  KLILADVFDALENLEEQSIDMIFADPPYFLSNDG-ISCSGGKQVSVNKGDWDKGLPLSEK 75

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R W+  C+RVLK +G++W+ G++HNI+ IG+ L+   F ILN+I W+K NP PN  
Sbjct: 76  HEFNRHWIRECKRVLKRDGSIWISGTFHNIYSIGSALEQERFKILNNITWQKLNPPPNLG 135

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET+IWA    K   + FNY  +K  N+  QM+         G+   +N+   
Sbjct: 136 CRCFTHSTETVIWARKDEKKAKHKFNYGLMKELNDGKQMKDV-----WQGTLTPKNEKAF 190

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKPE LL RI+++ST  GD++LDPF GSGT+  VA +L RS IGI+   +Y++IA
Sbjct: 191 GKHPTQKPEYLLERIILASTNEGDLVLDPFVGSGTTVVVANRLGRSGIGIDNNPEYLEIA 250

Query: 262 TKRI 265
            KR+
Sbjct: 251 KKRL 254


>gi|329119746|ref|ZP_08248425.1| modification methylase DpnIIB [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464141|gb|EGF10447.1| modification methylase DpnIIB [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 269

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 97/250 (38%), Positives = 146/250 (58%), Gaps = 11/250 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   ++++V+ K+    P    D+IFADPPY L  NG     +  +V      WDK    
Sbjct: 27  LYHEDALTVMRKILDKHPEGCFDMIFADPPYFLSNNG-FTCQNGQMVSVNKGGWDKSQGM 85

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G+ HNI+ +G ++Q++ + ILN+I W K NP P
Sbjct: 86  AADMEFYEEWLRLCYALLKPNGTIWVCGTQHNIYLVGYLMQSVGYHILNNITWEKPNPPP 145

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ETL+WA  + K   +TF+Y  +KA N   QM+S W +   + +E+   K
Sbjct: 146 NLSCRFFTHSTETLLWAKKN-KTAKHTFHYKVMKAQNGGKQMKSVWQLTPPNKTEKTHGK 204

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP ALL R +++++  GD++ DPF GSGT+GA A K  R F G E ++++ 
Sbjct: 205 -----HPTQKPLALLERCILAASNIGDLVFDPFAGSGTTGAAALKHGRRFCGCEKEEEFF 259

Query: 259 DIATKRIASV 268
           ++A KR+ + 
Sbjct: 260 ELAKKRLKND 269


>gi|269976527|ref|ZP_06183512.1| DNA methylase [Mobiluncus mulieris 28-1]
 gi|269935328|gb|EEZ91877.1| DNA methylase [Mobiluncus mulieris 28-1]
          Length = 277

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 101/249 (40%), Positives = 149/249 (59%), Gaps = 6/249 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I  G++  +L ++   SVD+IFADPPY L   G +       V     +WD+    E  
Sbjct: 23  RIFLGDAFEILARIAQSSVDMIFADPPYFLSNGG-ISCSGGRQVSVNKGAWDRGMGTEEK 81

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R W+  C+RVLK +G++WV G++HNI+ +G  L+   F ILN+I W+K NP PN  
Sbjct: 82  HGFNRRWVRQCKRVLKRDGSIWVSGTFHNIYSLGFALEQEGFKILNNITWQKLNPPPNLA 141

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET+IWA  + +   + F+Y  +K  N   QM+  W   +   SE++  K   
Sbjct: 142 CRCFTHSTETVIWARKNERKARHFFDYPLMKTLNGGKQMKDVWAGTLTPKSEKICGK--- 198

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKPE LL RI+++ST+ GD++LDPF GSGT+  VAK+L R  IGI+  ++Y++IA
Sbjct: 199 --HPTQKPEYLLERIILASTREGDLVLDPFVGSGTTAVVAKRLGRYSIGIDSVEEYLEIA 256

Query: 262 TKRIASVQP 270
            KR+A    
Sbjct: 257 GKRLAQTAK 265


>gi|291551270|emb|CBL27532.1| DNA modification methylase [Ruminococcus torques L2-14]
          Length = 574

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 149/382 (39%), Gaps = 45/382 (11%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS---- 71
           W +KI  G+++ V+  L  +    +DLI+ DPP++ + + +      +   A++D+    
Sbjct: 50  WINKIFWGDNLQVMSHLLKEYRGKIDLIYIDPPFDSKADYKKKIKMKNTGTALSDTSTFE 109

Query: 72  ---WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWIL 126
              +    + + Y  F     +  R +L   G+L+V   +H +  +  +L  +       
Sbjct: 110 EKQYGDIWTNDEYLQFMYERFILIRELLSERGSLYVHCDWHKVHHLRMVLDEVFGPSNFR 169

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA------------ 174
           N+++W            ++ + H+ +++ S S        +                   
Sbjct: 170 NEVIWWYLWGGRG--KTQWNSKHDNILFYSKSDNWTFNYMDVLDEHTLMTEGSKNRLNYA 227

Query: 175 ---------NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                    N ++             +        ++ +PTQKPE LLS+I+++S+ PGD
Sbjct: 228 GAMVTTKSENSEIPQDKVLPSDTWYIATINAMAKEKENYPTQKPEELLSKIILASSNPGD 287

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT- 284
           I+ D F GSGT+ AVA KL R FIG ++    I   TKR+ +V    N  L         
Sbjct: 288 IVFDCFMGSGTTQAVAMKLGRRFIGADINLGSIQTTTKRLINVANELNESLQDDEKYIGF 347

Query: 285 EPRVAFNLLVERGLIQPGQILTNA------QGNISATVCADGTLISGTELGSIHRVGAKV 338
           E     N    R  ++   ++  A        +       DG ++   ++  ++R+  K 
Sbjct: 348 EVYNVNNYDFFRNPVEARDLIIQALEIQPFPQSDVWDGELDGRMV---KIMPVNRIATKA 404

Query: 339 SGSETCNGWNFWYFEKLGELHS 360
              E      +  +EK    + 
Sbjct: 405 DLEELKANLPYKTYEKRKAENP 426


>gi|290580993|ref|YP_003485385.1| putative adenine-specific DNA methylase [Streptococcus mutans
           NN2025]
 gi|254997892|dbj|BAH88493.1| putative adenine-specific DNA methylase [Streptococcus mutans
           NN2025]
          Length = 257

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 105/251 (41%), Positives = 155/251 (61%), Gaps = 8/251 (3%)

Query: 19  WKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           +K+K  ++  ++   LEK+ ++S+D+IFADPPY L   G        ++      WDK +
Sbjct: 7   YKNKTILVHADTFQFLEKMKSESIDMIFADPPYFLSNGG-FSNSGGQVISVDKGDWDKAA 65

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E    F R W+   ++VLK NGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP
Sbjct: 66  SLEEKHEFNRRWIRLAKKVLKSNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNP 125

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+        +GS   +
Sbjct: 126 VPNLSCRYFTHSTETILWARKNDKKSKHYYNYDLMKKINDGKQMKDV-----WTGSLTKK 180

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAKKL R FIGI+ +++
Sbjct: 181 SEKWAGKHPTQKPEYLLERIILASTKKGDYILDPFVGSGTTGVVAKKLGRRFIGIDSERE 240

Query: 257 YIDIATKRIAS 267
           Y+ IA  R+  
Sbjct: 241 YLRIARTRLER 251


>gi|148998713|ref|ZP_01826151.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
           SP11-BS70]
 gi|149006496|ref|ZP_01830195.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
           SP18-BS74]
 gi|168491835|ref|ZP_02715978.1| DNA methylase [Streptococcus pneumoniae CDC0288-04]
 gi|168574962|ref|ZP_02720925.1| DNA methylase [Streptococcus pneumoniae MLV-016]
 gi|169832858|ref|YP_001695216.1| DNA methylase [Streptococcus pneumoniae Hungary19A-6]
 gi|194398425|ref|YP_002038438.1| DNA adenine methyltransferase DpnII [Streptococcus pneumoniae G54]
 gi|225857437|ref|YP_002738948.1| DNA methylase [Streptococcus pneumoniae P1031]
 gi|225859611|ref|YP_002741121.1| DNA methylase [Streptococcus pneumoniae 70585]
 gi|307068464|ref|YP_003877430.1| DNA modification methylase [Streptococcus pneumoniae AP200]
 gi|307128045|ref|YP_003880076.1| DNA methylase [Streptococcus pneumoniae 670-6B]
 gi|147755407|gb|EDK62456.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
           SP11-BS70]
 gi|147761794|gb|EDK68757.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
           SP18-BS74]
 gi|168995360|gb|ACA35972.1| DNA methylase [Streptococcus pneumoniae Hungary19A-6]
 gi|183573905|gb|EDT94433.1| DNA methylase [Streptococcus pneumoniae CDC0288-04]
 gi|183578786|gb|EDT99314.1| DNA methylase [Streptococcus pneumoniae MLV-016]
 gi|194358092|gb|ACF56540.1| DNA adenine methyltransferase DpnII [Streptococcus pneumoniae G54]
 gi|225720270|gb|ACO16124.1| DNA methylase [Streptococcus pneumoniae 70585]
 gi|225724476|gb|ACO20328.1| DNA methylase [Streptococcus pneumoniae P1031]
 gi|301794813|emb|CBW37269.1| DNA methylase [Streptococcus pneumoniae INV104]
 gi|306410001|gb|ADM85428.1| DNA modification methylase [Streptococcus pneumoniae AP200]
 gi|306485107|gb|ADM91976.1| DNA methylase [Streptococcus pneumoniae 670-6B]
 gi|332073000|gb|EGI83481.1| DNA methylase family protein [Streptococcus pneumoniae GA17545]
 gi|332201259|gb|EGJ15330.1| DNA methylase family protein [Streptococcus pneumoniae GA47901]
          Length = 256

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 109/252 (43%), Positives = 154/252 (61%), Gaps = 8/252 (3%)

Query: 20  KDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           K+K+I    ++   L K+  +S+D+IFADPPY L   G +      +V      WDK SS
Sbjct: 8   KNKMILVHSDTFKFLSKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKISS 66

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FE    F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 67  FEEKHEFNRKWIRLAKEVLKPNGTVWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPA 126

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+        +GS   + 
Sbjct: 127 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDV-----WTGSLTKKV 181

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 182 EKWAGKHPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 241

Query: 258 IDIATKRIASVQ 269
           + IA KR+ +  
Sbjct: 242 LKIARKRLEAEN 253


>gi|241888632|ref|ZP_04775939.1| DNA methylase [Gemella haemolysans ATCC 10379]
 gi|241864655|gb|EER69030.1| DNA methylase [Gemella haemolysans ATCC 10379]
          Length = 258

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 110/248 (44%), Positives = 157/248 (63%), Gaps = 6/248 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G++  V+EK+ ++S+D+IFADPPY L  +G        +V      WDK SSFE  
Sbjct: 11  TLALGDTFEVIEKIKSESIDMIFADPPYFLSNDG-FSNSGGKVVSVNKGDWDKISSFEEK 69

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R W+   +RVLKPNGT+W+ G+ HNI+ +G  L+   F ILN+I W+K+NP PN  
Sbjct: 70  HNFNREWIRKAKRVLKPNGTIWISGTLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLS 129

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET++WA  + K   + +NYD +K  N   QM+  W  P+   SE+   K   
Sbjct: 130 CRYFTHSTETILWARKADKYARHYYNYDLMKEINNGKQMKDVWTGPLTKISEKWAGK--- 186

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKPE LL RI+++ST+ GD +LDPF GSGT+G VAK+L R F GI+ K++Y+DIA
Sbjct: 187 --HPTQKPEYLLERIILASTEEGDYVLDPFVGSGTTGVVAKRLGRKFAGIDFKEEYLDIA 244

Query: 262 TKRIASVQ 269
            +R+ +V 
Sbjct: 245 KRRLEAVN 252


>gi|24378989|ref|NP_720944.1| putative adenine-specific DNA methylase [Streptococcus mutans
           UA159]
 gi|24376880|gb|AAN58250.1|AE014896_6 putative adenine-specific DNA methylase [Streptococcus mutans
           UA159]
          Length = 269

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 106/251 (42%), Positives = 155/251 (61%), Gaps = 8/251 (3%)

Query: 19  WKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           +K+K  ++  ++   LEK+ ++S+D+IFADPPY L   G        +V      WDK +
Sbjct: 19  YKNKTILVHADTFQFLEKMKSESIDMIFADPPYFLSNGG-FSNSGGQVVSVDKGDWDKAA 77

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E    F R W+   ++VLK NGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP
Sbjct: 78  SLEEKHEFNRRWIRLAKKVLKSNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNP 137

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+        +GS   +
Sbjct: 138 VPNLSCRYFTHSTETILWARKNDKKSKHYYNYDLMKKINDGKQMKDV-----WTGSLTKK 192

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAKKL R FIGI+ +++
Sbjct: 193 SEKWAGKHPTQKPEYLLERIILASTKKGDYILDPFVGSGTTGVVAKKLGRRFIGIDSERE 252

Query: 257 YIDIATKRIAS 267
           Y+ IA  R+  
Sbjct: 253 YLRIARTRLER 263


>gi|332199870|gb|EGJ13945.1| DNA methylase family protein [Streptococcus pneumoniae GA41317]
          Length = 256

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 109/252 (43%), Positives = 155/252 (61%), Gaps = 8/252 (3%)

Query: 20  KDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           K+K+I    ++   L K+  +S+D+IFADPPY L   G +      +V      WDK SS
Sbjct: 8   KNKMILVHSDTFKFLSKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKISS 66

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FE    F R W+   + VLKPNGT+W+ GS HNI+ +G +L+   F ILN+I W+K+NP 
Sbjct: 67  FEEKHEFNRKWIRLAKEVLKPNGTVWISGSLHNIYSVGMVLEQEGFKILNNITWQKTNPA 126

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+        +GS   + 
Sbjct: 127 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDV-----WTGSLTKKV 181

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 182 EKWAGKHPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 241

Query: 258 IDIATKRIASVQ 269
           + IA KR+ +  
Sbjct: 242 LKIARKRLEAEN 253


>gi|127389|sp|P09358|MTD22_STRPN RecName: Full=Modification methylase DpnIIB; Short=M.DpnIIB;
           AltName: Full=Adenine-specific methyltransferase DpnIIB;
           AltName: Full=M.DpnII 2
 gi|6978344|gb|AAA88581.2| DNA adenine methyltransferase [Streptococcus pneumoniae]
          Length = 268

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/252 (43%), Positives = 154/252 (61%), Gaps = 8/252 (3%)

Query: 20  KDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           K+K+I    ++   L K+  +S+D+IFADPPY L   G +      +V      WDK SS
Sbjct: 20  KNKMILVHSDTFKFLSKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKISS 78

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FE    F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 79  FEEKHEFNRKWIRLAKEVLKPNGTVWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPA 138

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+        +GS   + 
Sbjct: 139 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDV-----WTGSLTKKV 193

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 194 EKWAGKHPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 253

Query: 258 IDIATKRIASVQ 269
           + IA KR+ +  
Sbjct: 254 LKIARKRLEAEN 265


>gi|322375761|ref|ZP_08050273.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C300]
 gi|321279469|gb|EFX56510.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C300]
          Length = 270

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 105/246 (42%), Positives = 151/246 (61%), Gaps = 6/246 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++  +L K+  +S+D+IFADPPY L   G +      +V      WDK SSFE   
Sbjct: 25  LVHADTFKLLSKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKISSFEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP PN   
Sbjct: 84  EFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA  + K   + +NYD +K  N+  QM+        +G+   + +    
Sbjct: 144 RYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDV-----WTGALTKKAEKWAG 198

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y+ IA 
Sbjct: 199 KHPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEYLKIAK 258

Query: 263 KRIASV 268
           +RI   
Sbjct: 259 QRIERE 264


>gi|325204847|gb|ADZ00301.1| Modification methylase LlaDCHIB [Neisseria meningitidis M01-240355]
          Length = 269

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 100/249 (40%), Positives = 147/249 (59%), Gaps = 11/249 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IFADPPY L  +G     +  +V     +WDK    
Sbjct: 28  LYNENSLNVMRKILEKYPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ET++WA  + KA  +TF+Y+ +KA N+  QM+  W  P  + +E+   K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKA-KHTFHYEMMKAQNDGKQMKCVWTFPPPNKAEKTFGK 205

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP  LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ 
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260

Query: 259 DIATKRIAS 267
           ++A KR+  
Sbjct: 261 ELAKKRLEK 269


>gi|307705510|ref|ZP_07642364.1| modification methylase DpnIIB [Streptococcus mitis SK597]
 gi|307620968|gb|EFO00051.1| modification methylase DpnIIB [Streptococcus mitis SK597]
          Length = 253

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 105/244 (43%), Positives = 151/244 (61%), Gaps = 6/244 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++  +L K+  +S+D+IFADPPY L   G +      +V      WDK SSFE   
Sbjct: 13  LVHADTFKLLSKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKISSFEEKH 71

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP PN   
Sbjct: 72  EFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 131

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA  + K   + +NYD +K  N+  QM+        +G+   + +    
Sbjct: 132 RYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDV-----WTGALTKKAEKWAG 186

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y+ IA 
Sbjct: 187 KHPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEYLKIAR 246

Query: 263 KRIA 266
           KR+ 
Sbjct: 247 KRLE 250


>gi|238022785|ref|ZP_04603211.1| hypothetical protein GCWU000324_02696 [Kingella oralis ATCC 51147]
 gi|237865988|gb|EEP67124.1| hypothetical protein GCWU000324_02696 [Kingella oralis ATCC 51147]
          Length = 262

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 102/251 (40%), Positives = 141/251 (56%), Gaps = 11/251 (4%)

Query: 21  DKIIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
             I   N++ V+ ++    P    D+IFADPPY L   G     +  +V      WDK  
Sbjct: 19  HIIYHENALLVMRRILDKYPNGCFDMIFADPPYFLSNGG-FTCQNGQMVSVNKGDWDKSQ 77

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              A  AF   WL  C  +LKPNG++WV G++HNI+ IG ++Q L + ILN+I W K NP
Sbjct: 78  GMAADMAFYEEWLGLCYALLKPNGSIWVCGTHHNIYLIGYLMQTLGYHILNNITWEKPNP 137

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            PN   R F ++ ETL+WA    K   +TF YD +KA N   QM+S W I   + SE+  
Sbjct: 138 PPNLSCRFFTHSTETLLWAKKG-KRAKHTFQYDVMKAQNGGKQMKSVWQIAPPAASEKTL 196

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K     HPTQKP ALL R + +++ P D I DPF GSGT+G  A K  R+F G E+  +
Sbjct: 197 GK-----HPTQKPLALLERCIQAASNPNDWIFDPFMGSGTTGVAALKHGRNFCGCEINDE 251

Query: 257 YIDIATKRIAS 267
           + ++A KR+ +
Sbjct: 252 FFELAKKRLQT 262


>gi|163753955|ref|ZP_02161078.1| DNA methylase N-4/N-6 domain protein [Kordia algicida OT-1]
 gi|161326169|gb|EDP97495.1| DNA methylase N-4/N-6 domain protein [Kordia algicida OT-1]
          Length = 596

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 84/400 (21%), Positives = 162/400 (40%), Gaps = 60/400 (15%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYN--------LQLNGQLYRPDH 62
             +  W +KI  G+++ V+  L  +    VDLI+ DPP++        ++L G+    + 
Sbjct: 55  EEVNGWMNKIFWGDNLQVMSHLLKEYRGKVDLIYIDPPFDSKADYKRKIELKGKKIENNR 114

Query: 63  SLVDA--VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           +  +    TD W    + ++Y  F    ++  + +L   GT++V   Y  I  +  ++  
Sbjct: 115 TSFEEKQYTDIW----TNDSYLQFIYERVILLKELLSDKGTIYVHADYRKIHYLQLIMDE 170

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD----------- 169
           +                 +  G  F   H+ ++  S +     +  +             
Sbjct: 171 IFGASNFRNEIIWCYTGASNVGSDFPKKHDNILRYSKTGNYVFFKDSIRIPYAEGSLDRA 230

Query: 170 --------ALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSS 220
                    +   + ++              +R     GEK  +PTQK + LL RIL +S
Sbjct: 231 NRNVIGTGGMNFESIELNANGKVPEDFWVDIQRAARYPGEKTGYPTQKSKKLLERILKAS 290

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ-----PLGNIE 275
           +KPGDI+ D F GSGT+ AVA +L R FIG ++    I+  TKR+   +      + +++
Sbjct: 291 SKPGDIVFDCFMGSGTTQAVAMELGRKFIGADINLGAIETTTKRLNISREKITSKVPDVD 350

Query: 276 LTVLTGKRTEPRVAF---------NLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
            T   G+  + +  +         N  V R  +Q  +IL   +  +      + T+  G 
Sbjct: 351 FTNEDGETEKIKDFYTGFSVYNVNNYDVFRNPVQAKEIL---KQALEIQPLPNNTIYDGE 407

Query: 327 ------ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
                 ++  ++R+  +   +E  +G+N+  F+K  E   
Sbjct: 408 KDGRMVKIMPVNRIATRADLNELISGFNYKSFQKKFEKQP 447


>gi|322372954|ref|ZP_08047490.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C150]
 gi|321277996|gb|EFX55065.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C150]
          Length = 270

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 105/253 (41%), Positives = 153/253 (60%), Gaps = 8/253 (3%)

Query: 19  WKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           +KDK  ++  ++   L+K+  +S+D+IFADPPY L   G        +V      WDK  
Sbjct: 7   YKDKAILVHADTFEFLKKIKPESMDMIFADPPYFLSNGG-FSNSGGKVVSVNKGDWDKID 65

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + E    F R W+   ++VLKPNGT+WV GS+HNI+ +G  L+   F ILN+I W+K+NP
Sbjct: 66  TLEEKHDFNRNWIRLAKKVLKPNGTIWVSGSFHNIYSVGMALEQEGFKILNNITWQKTNP 125

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            PN   R F ++ ET++WA  + K   + +NY+ +K  N   QM+        +G+   +
Sbjct: 126 APNLSCRYFTHSTETVLWARKNDKKAKHYYNYELMKELNGGKQMKDV-----WTGALTKK 180

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            +     HPTQKPE LL RI+++STKP D ILDPF GSGT+G VAK+L R FIGI+ ++D
Sbjct: 181 AEKWAGKHPTQKPEYLLERIILASTKPNDYILDPFVGSGTTGVVAKRLGRYFIGIDSEKD 240

Query: 257 YIDIATKRIASVQ 269
           Y+ IA  R+   +
Sbjct: 241 YLKIAQARLEREK 253


>gi|289167373|ref|YP_003445642.1| DNA adenine methyltransferase, (adenine-specific methyltransferase
           DpnIIB) [Streptococcus mitis B6]
 gi|322377535|ref|ZP_08052026.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. M334]
 gi|288906940|emb|CBJ21774.1| DNA adenine methyltransferase, (adenine-specific methyltransferase
           DpnIIB) [Streptococcus mitis B6]
 gi|321281735|gb|EFX58744.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. M334]
          Length = 263

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 105/244 (43%), Positives = 151/244 (61%), Gaps = 6/244 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++  +L K+  +S+D+IFADPPY L   G +      +V      WDK SSFE   
Sbjct: 25  LVHADTFKLLSKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKISSFEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP PN   
Sbjct: 84  EFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA  + K   + +NYD +K  N+  QM+        +G+   + +    
Sbjct: 144 RYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDV-----WTGALTKKAEKWAG 198

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y+ IA 
Sbjct: 199 KHPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEYLKIAK 258

Query: 263 KRIA 266
           KR+ 
Sbjct: 259 KRLE 262


>gi|225076901|ref|ZP_03720100.1| hypothetical protein NEIFLAOT_01952 [Neisseria flavescens
           NRL30031/H210]
 gi|224951787|gb|EEG32996.1| hypothetical protein NEIFLAOT_01952 [Neisseria flavescens
           NRL30031/H210]
          Length = 271

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 100/250 (40%), Positives = 147/250 (58%), Gaps = 11/250 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IFADPPY L  +G     +  +V     +WDK    
Sbjct: 28  LYNENSLNVMRKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ET++WA  + KA  +TF+Y+ +KA N+  QM+  W  P  + +E+   K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKA-KHTFHYEMMKAQNDGKQMKCVWTFPPPNKTEKTFGK 205

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP  LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ 
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHDRKFCGCELEEDFF 260

Query: 259 DIATKRIASV 268
           ++A KR+   
Sbjct: 261 ELAKKRLQQK 270


>gi|322392398|ref|ZP_08065859.1| modification methylase BabI [Streptococcus peroris ATCC 700780]
 gi|321144933|gb|EFX40333.1| modification methylase BabI [Streptococcus peroris ATCC 700780]
          Length = 265

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 105/244 (43%), Positives = 151/244 (61%), Gaps = 6/244 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++  +L K+  +S+D+IFADPPY L   G +      +V      WDK SSFE   
Sbjct: 25  LVHSDTFKLLSKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKISSFEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP PN   
Sbjct: 84  EFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA  + K   + +NYD +K  N+  QM+        +G+   + +    
Sbjct: 144 RYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDV-----WTGALTKKAEKWAG 198

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y+ IA 
Sbjct: 199 KHPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEYLKIAK 258

Query: 263 KRIA 266
           KR+ 
Sbjct: 259 KRLE 262


>gi|223932377|ref|ZP_03624380.1| DNA methylase N-4/N-6 domain protein [Streptococcus suis 89/1591]
 gi|330831883|ref|YP_004400708.1| DNA adenine methylase M.SsuMB [Streptococcus suis ST3]
 gi|223899058|gb|EEF65416.1| DNA methylase N-4/N-6 domain protein [Streptococcus suis 89/1591]
 gi|329306106|gb|AEB80522.1| DNA adenine methylase M.SsuMB [Streptococcus suis ST3]
          Length = 259

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 103/251 (41%), Positives = 149/251 (59%), Gaps = 8/251 (3%)

Query: 20  KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           K+K  ++  ++   L K+  +S+D+IFADPPY L   G +      +V      WDK  S
Sbjct: 8   KNKAILVHADTFEFLNKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKVDS 66

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E    F R W+   + VLKPNGT+W+ GS+HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 67  LEEKHEFNRKWIRLAKNVLKPNGTIWISGSFHNIYSVGMALEQEGFKILNNITWQKTNPA 126

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA    K   + +NY+ +K  N+  QM+         G    ++
Sbjct: 127 PNLSCRYFTHSTETILWARKDDKKARHYYNYELMKELNDGKQMKDV-----WVGGLTKKS 181

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +     HPTQKPE LL RI+++ST+ GD ILDPF GSGT+G VAK+L R FIGI+ ++DY
Sbjct: 182 EKWAGKHPTQKPEYLLERIILASTQEGDYILDPFVGSGTTGVVAKRLGRKFIGIDAERDY 241

Query: 258 IDIATKRIASV 268
           + IA  R+   
Sbjct: 242 LKIARTRLDKE 252


>gi|12082202|dbj|BAB20829.1| DNA adenine methylase M.SsuMB [Streptococcus suis]
 gi|15281320|dbj|BAB63414.1| DNA adenine methylase M.Ssu11318IB [Streptococcus suis]
 gi|15281326|dbj|BAB63419.1| DNA adenine methylase M.Ssu4961IB [Streptococcus suis]
 gi|15281332|dbj|BAB63424.1| DNA adenine methylase M.Ssu8074IB [Streptococcus suis]
 gi|15281338|dbj|BAB63429.1| DNA adenine methylase M.Ssu2479IB [Streptococcus suis]
          Length = 271

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 103/251 (41%), Positives = 149/251 (59%), Gaps = 8/251 (3%)

Query: 20  KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           K+K  ++  ++   L K+  +S+D+IFADPPY L   G +      +V      WDK  S
Sbjct: 20  KNKAILVHADTFEFLNKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKVDS 78

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E    F R W+   + VLKPNGT+W+ GS+HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 79  LEEKHEFNRKWIRLAKNVLKPNGTIWISGSFHNIYSVGMALEQEGFKILNNITWQKTNPA 138

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA    K   + +NY+ +K  N+  QM+         G    ++
Sbjct: 139 PNLSCRYFTHSTETILWARKDDKKARHYYNYELMKELNDGKQMKDV-----WVGGLTKKS 193

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +     HPTQKPE LL RI+++ST+ GD ILDPF GSGT+G VAK+L R FIGI+ ++DY
Sbjct: 194 EKWAGKHPTQKPEYLLERIILASTQEGDYILDPFVGSGTTGVVAKRLGRKFIGIDAERDY 253

Query: 258 IDIATKRIASV 268
           + IA  R+   
Sbjct: 254 LKIARTRLDKE 264


>gi|14327902|ref|NP_116732.1| LlaDCHIB [Lactococcus lactis]
 gi|1709051|sp|P50178|MTL22_LACLC RecName: Full=Modification methylase LlaDCHIB; Short=M.LlaDCHI B;
           Short=M.LlaDCHIB; AltName: Full=Adenine-specific
           methyltransferase LlaDCHIB; AltName: Full=M.LlaII B
 gi|794257|gb|AAB06312.1| LlaDCHIB [Lactococcus lactis]
          Length = 269

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 107/245 (43%), Positives = 152/245 (62%), Gaps = 6/245 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  +S  +LEK+  +S+D+IFADPPY L   G +      +V      WDK SSFE   
Sbjct: 25  LVHADSFKLLEKIKPESMDMIFADPPYFLSNGG-MSNSGGQIVSVDKGDWDKISSFEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W+   R VLKPNGT+WV GS HNI+ +G  L+   F ILN+I W+K+NP PN   
Sbjct: 84  DFNRRWIRLARLVLKPNGTIWVSGSLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA  + K   + +NY+ +K  N+  QM+        +GS   +++    
Sbjct: 144 RYFTHSTETILWARKNDKKSRHYYNYELMKEFNDGKQMKDV-----WTGSLTKKSEKWAG 198

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE +L RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ +++Y+ IA 
Sbjct: 199 KHPTQKPEYILERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDSEKEYLKIAK 258

Query: 263 KRIAS 267
           KR+  
Sbjct: 259 KRLNK 263


>gi|212639015|ref|YP_002315535.1| adenine specific DNA methylase Mod [Anoxybacillus flavithermus WK1]
 gi|212560495|gb|ACJ33550.1| Adenine specific DNA methylase Mod [Anoxybacillus flavithermus WK1]
          Length = 589

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 95/403 (23%), Positives = 158/403 (39%), Gaps = 76/403 (18%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYN--------LQLNGQLYRPDHSLVDA 67
           W +KI  G+++ V+  L  +    + LI+ DPP++        +Q+ G      +SL + 
Sbjct: 53  WMNKIFWGDNLQVMSHLLKEFRGKIKLIYIDPPFDSKADYKKRIQVRGNSTVSHNSLFEE 112

Query: 68  --VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ------ 119
              TD W    S + Y  F    L+  R +L  +G+++V   +H    I  +L       
Sbjct: 113 KQYTDIW----SNDEYLQFLYERLILMRELLAEDGSIFVHTDWHKSHHIRCLLDEVFGDS 168

Query: 120 ---NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--- 173
                      +I+W  S    N   ++F+  HE + W + S +      +     +   
Sbjct: 169 GDEMKKAGFKGEIIWYFSLIGGN--AKKFEKNHENIYWYTKSSEYIFNKDDVRQPYSKEF 226

Query: 174 ---ANEDVQMRSDWLIPICSGSERLRNKDGEKLHP------------------------- 205
                 D + R  +   +    E+L  K    +HP                         
Sbjct: 227 LEQCKRDEEGRLYYTRGMGRDGEKLNRKHISYIHPLGKAPSDVWTDIKNYSPTGKERLGY 286

Query: 206 -TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            TQKPEAL+ RI+ +++ PGDI+ D F GSGT+ AVA KL R FIG ++    +   TKR
Sbjct: 287 PTQKPEALIERIIKAASNPGDIVFDCFMGSGTTQAVAMKLGRRFIGSDINLGAVQTTTKR 346

Query: 265 IASVQPLGNIELTVLTGKR-------TEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           + ++        T               P  A  LL+E   IQP    +   G +     
Sbjct: 347 LLNILREDPDLKTGFEVYNVNNYEFFRNPVQAKELLIEALEIQPLPNNSLYDGEL----- 401

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
            DG ++   ++   +R+  K    E    +++  FEK  E   
Sbjct: 402 -DGRMV---KIMPTNRIATKADLGELIQNFDYRLFEKRREERP 440


>gi|325131534|gb|EGC54241.1| DNA methylase [Neisseria meningitidis M6190]
          Length = 269

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 99/249 (39%), Positives = 148/249 (59%), Gaps = 11/249 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IF+DPPY L  +G     +  +V     +WDK    
Sbjct: 28  LYNENSLNVMRKILEKYPNGCFDMIFSDPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ET++WA  + KA  +TF+Y+ +KA N+  QM+  W  P  + +E+   K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKA-KHTFHYEMMKAQNDGKQMKCVWTFPPPNKAEKTFGK 205

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP +LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ 
Sbjct: 206 -----HPTQKPLSLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260

Query: 259 DIATKRIAS 267
           ++A KR+  
Sbjct: 261 ELAKKRLEK 269


>gi|121634196|ref|YP_974441.1| putative modification methylase DpnIIB [Neisseria meningitidis
           FAM18]
 gi|120865902|emb|CAM09638.1| putative Modification methylase DpnIIB [Neisseria meningitidis
           FAM18]
 gi|325139212|gb|EGC61758.1| Modification methylase LlaDCHIB [Neisseria meningitidis ES14902]
 gi|325141587|gb|EGC64053.1| Modification methylase LlaDCHIB [Neisseria meningitidis 961-5945]
 gi|325197609|gb|ADY93065.1| Modification methylase LlaDCHIB [Neisseria meningitidis G2136]
          Length = 269

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 99/249 (39%), Positives = 147/249 (59%), Gaps = 11/249 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IF+DPPY L  +G     +  +V     +WDK    
Sbjct: 28  LYNENSLNVMRKILEKYPNGCFDMIFSDPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ET++WA  + KA  +TF+Y+ +KA N+  QM+  W  P  + +E+   K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKA-KHTFHYEMMKAQNDGKQMKCVWTFPPPNKAEKTFGK 205

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP  LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ 
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260

Query: 259 DIATKRIAS 267
           ++A KR+  
Sbjct: 261 ELAKKRLEK 269


>gi|146297740|ref|YP_001181511.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411316|gb|ABP68320.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 247

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 103/255 (40%), Positives = 139/255 (54%), Gaps = 15/255 (5%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + ++VL+K+   S+DLIFADPPYNL     L       V      WDK        
Sbjct: 6   LFNDDCLNVLKKIEDNSIDLIFADPPYNLSSENALTTRAGKPVKCYKGEWDKIDDI---F 62

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W+  C RVLK  GT+W+ G+ HN   IGT+L+ L  WI+NDI+W K N  P    
Sbjct: 63  EFNLRWIEQCVRVLKETGTIWISGTLHNHPIIGTILKQLGLWIINDIIWFKPNATPLLSR 122

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            RF  + E +  AS +     Y F+Y+  +  N   QMR+ W IP             + 
Sbjct: 123 NRFVPSTELIWVASKNK---RYYFDYEMARKLNGGKQMRNLWEIPAQR---------HKT 170

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT+KPEALL RI++  +K GD++LDPF GSGT+G VAK L+R+FIGIE+   Y +IA 
Sbjct: 171 PHPTEKPEALLERIILIGSKEGDVVLDPFMGSGTTGVVAKLLKRNFIGIEIDPVYFEIAK 230

Query: 263 KRIASVQPLGNIELT 277
           KRI   +P+    L 
Sbjct: 231 KRIEEEKPIQQTFLN 245


>gi|19347659|gb|AAL86021.1| BsmIMA [Geobacillus stearothermophilus]
          Length = 275

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 103/269 (38%), Positives = 148/269 (55%), Gaps = 10/269 (3%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + EW + I     I  ++KLP  S+DL+ ADPPYNL   G+    +   +  +  +W+K 
Sbjct: 2   LSEWINTIQNTECIQSMKKLPDNSIDLVIADPPYNLSKGGKWKWDNSKKLVGMGGNWNKV 61

Query: 76  S------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
                  +FE Y  FT +WLL  +R+LKP G+LW+ G+YHN+  I  + Q L   I+N+I
Sbjct: 62  MENWDDMTFEEYWEFTESWLLEVKRILKPTGSLWIFGTYHNMGIINVVCQKLGIEIINEI 121

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD--ALKAANEDVQMRSDWLIP 187
           +W K N  PN  GRRF  +HET++W     K + Y FNY+     +  ED+       + 
Sbjct: 122 IWYKRNAFPNLSGRRFTASHETILWCHVGQKKREYYFNYEYVKNASFPEDMLKSPGKQMR 181

Query: 188 ICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                   + KD  K   HPTQKP  LL RI+++++K GDI L PF G G+    AK+L 
Sbjct: 182 TVWDIPNNKQKDELKFGKHPTQKPLRLLHRIILATSKEGDICLAPFSGVGSECVAAKELG 241

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           R+FIG E+ ++Y DI+ KRI S Q     
Sbjct: 242 RNFIGFEINKEYYDISLKRIESTQKKIEQ 270


>gi|309801799|ref|ZP_07695917.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium
           JCVIHMP022]
 gi|308221553|gb|EFO77847.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium
           JCVIHMP022]
          Length = 261

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 101/246 (41%), Positives = 151/246 (61%), Gaps = 6/246 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ S+L K+  +SVD+IFADPPY L   G +      +V      WDK +SFEA  
Sbjct: 20  LFLGDTFSLLPKMQPESVDMIFADPPYFLSNGG-ISCHSGRMVSVDKGDWDKGASFEAKH 78

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W+  C+ VL PNGT+W+ G+ HNI+ +G  L+   F I+N+I W+K+NP PN   
Sbjct: 79  EFNRNWIRLCKTVLAPNGTIWISGTLHNIYSVGVALEQEGFKIINNITWQKTNPPPNLAC 138

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA  + +   + FNY  +K  N   QM+        +GS   + +  E 
Sbjct: 139 RCFTHSTETVLWAQRNDRCSKHFFNYALMKEMNGGKQMKDV-----WTGSLTPKREKIEG 193

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  LL RI++SST+PGD++LDPF GS T+G  A+KL R +IGI+ + +YI+++ 
Sbjct: 194 KHPTQKPLYLLERIILSSTEPGDLVLDPFCGSSTTGVAAQKLGRKYIGIDNEPEYIELSK 253

Query: 263 KRIASV 268
           +R+   
Sbjct: 254 RRLQKD 259


>gi|48290858|dbj|BAB63435.2| DNA adenine methylase M.Ssu4109IB [Streptococcus suis]
          Length = 271

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 8/256 (3%)

Query: 20  KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           K+K  ++  ++   L+K+  +S+D+IFADPPY L   G +      +V      WDK +S
Sbjct: 20  KNKAILVHADTFEFLDKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKVNS 78

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E    F R W+   + VLKPNGT+W+ GS+HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 79  LEEKHEFNRKWIRLAKNVLKPNGTIWISGSFHNIYSVGMALEQEGFKILNNITWQKTNPA 138

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA    K   + +NY+ +K  N+  QM+         G    ++
Sbjct: 139 PNLSCRYFTHSTETILWARKDDKKARHYYNYELMKELNDGKQMKDV-----WVGGLTKKS 193

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +     HPTQKPE LL RI+++ST+ GD ILDPF GSGT+G VAK+L R FIGI+ ++DY
Sbjct: 194 EKWAGKHPTQKPEYLLERIILASTREGDYILDPFVGSGTTGVVAKRLGRKFIGIDAERDY 253

Query: 258 IDIATKRIASVQPLGN 273
           + IA  R+       N
Sbjct: 254 LKIARTRLDKEDGKKN 269


>gi|295399896|ref|ZP_06809877.1| DNA methylase N-4/N-6 domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111585|ref|YP_003989901.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y4.1MC1]
 gi|294978299|gb|EFG53896.1| DNA methylase N-4/N-6 domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216686|gb|ADP75290.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 267

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 109/248 (43%), Positives = 149/248 (60%), Gaps = 7/248 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +I GN I  L +L   SVD+IFADPPY L   G +      +V      WDK S+    
Sbjct: 21  LLINGNCIDWLNRLEKNSVDMIFADPPYFLSSGG-ITCHSGKMVSVDKGEWDKPSTLNEI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            +F + WL AC+RVLK  GT+W+ G+ HNI+ IG  L  L + ILN+I W K N  PN  
Sbjct: 80  HSFNKEWLYACKRVLKDGGTIWISGTLHNIYSIGFALNELEYKILNNITWYKKNASPNLS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET++WA    K   Y FNY+ +K  N   QMR  W IP    SE+   +   
Sbjct: 140 CRYFTHSTETILWARKGKKTSHY-FNYNLMKEMNGGKQMRDVWEIPTTKKSEKAHGR--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  LL RI+++STK  DI+LDPF GSGT+G VAKKL R +IGI+++++Y+++ 
Sbjct: 196 --HPTQKPIELLERIILASTKINDIVLDPFNGSGTTGVVAKKLNRRYIGIDIEKEYLELT 253

Query: 262 TKRIASVQ 269
            KR+ + +
Sbjct: 254 IKRLEATE 261


>gi|296314163|ref|ZP_06864104.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
           43768]
 gi|296839202|gb|EFH23140.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
           43768]
          Length = 269

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 99/249 (39%), Positives = 145/249 (58%), Gaps = 11/249 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IFADPPY L  +G     +  +V     +WDK    
Sbjct: 28  LYNENSLNVMRKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPP 146

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ET++WA  + KA  +TF+Y+ +KA N   QM+  W  P  + +E+   K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKA-KHTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK 205

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP  LL R ++S++  G +I DPF GSGT+G  A K  R F G E+++D+ 
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGHLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260

Query: 259 DIATKRIAS 267
           ++A KR+  
Sbjct: 261 ELAKKRLEK 269


>gi|307701788|ref|ZP_07638802.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
 gi|307613046|gb|EFN92301.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 252

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 101/245 (41%), Positives = 147/245 (60%), Gaps = 6/245 (2%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G++  +L ++   SVD+IFADPPY L   G +       V     +WDK    E    F 
Sbjct: 2   GDAFEILARIAQSSVDMIFADPPYFLSNGG-ISCSGGRQVSVNKGAWDKGMGTEEKHGFN 60

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           R W+  C+RVLK +G++WV G++HNI+ +G  L+   F ILN+I W+K NP PN   R F
Sbjct: 61  RRWVRQCKRVLKRDGSIWVSGTFHNIYSLGFALEQEGFKILNNITWQKLNPPPNLACRCF 120

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
            ++ ET+IWA  + +   + F+Y  +K  N   QM+  W   +   SE++  K     HP
Sbjct: 121 THSTETVIWARKNERKARHFFDYPLMKTLNGGKQMKDVWAGTLTPKSEKICGK-----HP 175

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKPE LL RI+++ST+ GD++LDPF GSGT+  VAK+L R  IGI+  ++Y++IA KR+
Sbjct: 176 TQKPEYLLERIILASTREGDLVLDPFVGSGTTAVVAKRLGRYSIGIDSVEEYLEIAGKRL 235

Query: 266 ASVQP 270
           A    
Sbjct: 236 AHTAK 240


>gi|256421531|ref|YP_003122184.1| DNA methylase N-4/N-6 domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256036439|gb|ACU59983.1| DNA methylase N-4/N-6 domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 601

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/421 (20%), Positives = 158/421 (37%), Gaps = 71/421 (16%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY---RPDHSLVDA 67
             +  W +KI  G+++ V+  L       +D I+ DPPY+ + + +     R    + +A
Sbjct: 46  KEVKRWMNKIFWGDNLQVMSHLLKDYKGQIDFIYIDPPYDSKADYRKKIKLRGKEVINNA 105

Query: 68  VTDSWDKFS---SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNF 123
           ++    +++   S + Y  F    L+  R +L   G++ +   +H +  +  ++      
Sbjct: 106 ISFEEKQYTDIWSNDEYLQFMYERLMLIRELLSDKGSIILQCDWHKVHHLRCIMDEIFGP 165

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA---------------------- 161
               + +            + F   H+ L++                             
Sbjct: 166 DNCINEIIWHYKTFQGQTKKYFARKHDNLLFYKKGSDFIYNKLYDTSLENTIDAVRWADY 225

Query: 162 -----------------------KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
                                    +   Y     A++ +       +      + L  K
Sbjct: 226 IDENGRIYGKKMPLQDSRFIRYLNKWKRAYKREPEADDVIYEAKGQPLDSVWDMKGLDPK 285

Query: 199 DGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
             EKL +PTQKPE L+ RI++++T  G I+ D F GSGT  AVA K  R FIG ++    
Sbjct: 286 SEEKLGYPTQKPEDLMERIILATTNRGSIVFDCFMGSGTVQAVAMKTGRKFIGADINLGA 345

Query: 258 IDIATKRIASVQPLGN---IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA------ 308
           +   TKR+  V    N    ++T  TG +      F+  V R  ++  +IL  A      
Sbjct: 346 VQTTTKRLLHVAAELNKRKEKITRYTGFQVYNVNHFD--VFRNPLEAKEILIKALEIKPF 403

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSIN-TLRIL 367
             N       DG ++S   +  I+R+      +E    +++  FEKL   H     LR+L
Sbjct: 404 PNNNVYDGKKDGRMVS---IMPINRITTLADLNELIANFDYKAFEKLKSKHPRKPVLRLL 460

Query: 368 V 368
           +
Sbjct: 461 L 461


>gi|212639032|ref|YP_002315552.1| DNA modification methylase [Anoxybacillus flavithermus WK1]
 gi|212560512|gb|ACJ33567.1| DNA modification methylase [Anoxybacillus flavithermus WK1]
          Length = 263

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 104/244 (42%), Positives = 143/244 (58%), Gaps = 7/244 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+ + +  L+ +   S+ +IFADPPY L   G +      +V      WDK    E  D
Sbjct: 21  LIQDDCLRALQYIQPSSIHMIFADPPYFLSNGG-ISCKSGKIVRVDKGEWDKERDREKID 79

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W+ AC+RVLK +GT+W+ G++HNI  +G  L  L F ILN IVW+K++P PN   
Sbjct: 80  EFNYRWIQACKRVLKEDGTIWITGTFHNIHSVGQALHQLGFKILNSIVWQKTDPPPNMSK 139

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++HE +IWA  SPK++ Y FNY+A+   N   QM   W IP     E+        
Sbjct: 140 RMFTHSHEYIIWAKKSPKSRHY-FNYEAMVKENNGKQMTDVWTIPHVPPHEKTFGN---- 194

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  LL+RI+++STK  DIILDPF GSGT+G  A  L R FIG+E +  +I +  
Sbjct: 195 -HPTQKPLQLLNRIIIASTKQNDIILDPFCGSGTTGVSALCLNRKFIGMERELSFIQLTK 253

Query: 263 KRIA 266
           +RI 
Sbjct: 254 RRIQ 257


>gi|325294305|ref|YP_004280819.1| DNA methylase N-4/N-6 domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064753|gb|ADY72760.1| DNA methylase N-4/N-6 domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 291

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 102/278 (36%), Positives = 151/278 (54%), Gaps = 6/278 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   ++++VL+K+P +SVD++FADPPYNL  +G         V      WD+   FE  
Sbjct: 12  RLYLDDALNVLDKIPDESVDMVFADPPYNLSNDG-FTCHAGKRVSVNKGEWDRSQGFEKD 70

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F   W+  C+R+LKPNGT+W+ G+YH+I+  G  LQ   + I+N+I W K N  PN  
Sbjct: 71  FNFHYQWIEKCKRILKPNGTIWISGTYHSIYLCGFSLQKQGWHIINEICWYKPNASPNLS 130

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYD---ALKAANEDVQMRSDWLIPICSGSERLRNK 198
            R F  +HETL+WA    K   +TFNYD         + ++  +  +  + +     + +
Sbjct: 131 CRMFTASHETLLWAKKK-KEAKHTFNYDLAKNGSWEEDLLKKPNKQMRSVWAIPTPKKWE 189

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKPE LL RI++ +TKPGDI+LDPF GSGT+G VA +  R F+GI+  ++Y+
Sbjct: 190 KRYGKHPTQKPELLLKRIILLTTKPGDIVLDPFCGSGTTGVVAIRYGRRFVGIDFNEEYL 249

Query: 259 -DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            D+A  RI        I       +  E     N   E
Sbjct: 250 KDLAIPRIEDELKAKQINRERFLKEEKEIEYDANNYFE 287


>gi|239616524|ref|YP_002939846.1| DNA methylase N-4/N-6 domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505355|gb|ACR78842.1| DNA methylase N-4/N-6 domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 250

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 103/252 (40%), Positives = 136/252 (53%), Gaps = 15/252 (5%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I G+ I  L+KL A+SVDLIFADPPYNL     L       V      WDK  +    
Sbjct: 5   KLILGDCIEELKKLEAESVDLIFADPPYNLSGENHLTVHAGKPVKLDKGEWDKIDNIHE- 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F   W+  C RVLKP+GT+W+ G+ HN   IG  L+ L  WI+ND+VW K N  P   
Sbjct: 64  --FNLNWIKECIRVLKPHGTIWISGTLHNHPSIGMALKQLGLWIINDVVWYKPNATPLLS 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
             RF  + E +  A     +K Y FNY+  K  N+  QMR+ W          ++ K   
Sbjct: 122 KNRFVPSTEIIWVAGK---SKKYYFNYELAKEMNKGKQMRNLWT---------IKAKRHI 169

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HP +KPE LL RI++  +   D ILDPF GSGT+G VAK+  R+FIGIE+ Q+Y + A
Sbjct: 170 TPHPAEKPEELLERIILIGSNEADTILDPFMGSGTTGVVAKRYNRNFIGIEINQEYFEWA 229

Query: 262 TKRIASVQPLGN 273
            +RI       +
Sbjct: 230 KERIEKTIVKPS 241


>gi|325696288|gb|EGD38179.1| modification methylase BabI [Streptococcus sanguinis SK160]
          Length = 265

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 104/247 (42%), Positives = 145/247 (58%), Gaps = 6/247 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L K+  +S+D+IFADPPY L   G       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSKMKPESMDMIFADPPYFLSNGG-FSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+         G    + +    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDV-----WIGPLTKKAEKWAG 198

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 199 KHPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRIASVQ 269
           +R+   +
Sbjct: 259 RRLEEER 265


>gi|125718516|ref|YP_001035649.1| modification methylase DpnIIB [Streptococcus sanguinis SK36]
 gi|125498433|gb|ABN45099.1| Modification methylase DpnIIB, putative [Streptococcus sanguinis
           SK36]
          Length = 267

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 103/246 (41%), Positives = 144/246 (58%), Gaps = 6/246 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L ++  +S+D+IFADPPY L   G       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSQMKPESMDMIFADPPYFLSNGG-FSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+         G    + +    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDV-----WIGPLTKKAEKWAG 198

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 199 KHPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRIASV 268
           +R+   
Sbjct: 259 RRLEEE 264


>gi|325127469|gb|EGC50398.1| adenine-specific methyltransferase LlaDCHIB [Neisseria meningitidis
           N1568]
          Length = 266

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 97/243 (39%), Positives = 143/243 (58%), Gaps = 11/243 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IFADPPY L  +G     +  +V     +WDK    
Sbjct: 28  LYNENSLNVMRKILEKYPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ET++WA  + KA  +TF+Y+ +KA  +  QM+  W  P  + +E+   K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKA-KHTFHYEMMKAQTDGKQMKCVWTFPPPNKAEKTFGK 205

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP  LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ 
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260

Query: 259 DIA 261
           ++A
Sbjct: 261 ELA 263


>gi|327470495|gb|EGF15951.1| modification methylase BabI [Streptococcus sanguinis SK330]
          Length = 265

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 103/247 (41%), Positives = 145/247 (58%), Gaps = 6/247 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L ++  +S+D+IFADPPY L   G       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSQMKPESMDMIFADPPYFLSNGG-FSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+         G    + +    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDV-----WIGPLTKKAEKWAG 198

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 199 KHPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRIASVQ 269
           +R+   +
Sbjct: 259 RRLEEER 265


>gi|218961616|ref|YP_001741391.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
           DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730273|emb|CAO81185.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
           DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 263

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 98/253 (38%), Positives = 140/253 (55%), Gaps = 13/253 (5%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  GN + +L++L   S+D+IFADPPY L  +G +      +V      WD    F    
Sbjct: 16  LYWGNCMEILKELEPNSIDMIFADPPYFLS-DGTITCKSGKMVSVKKGDWDLLDEFNNKS 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W+  CR++LKP+GT+W+ G+YH+I++ G  LQ   F I+NDI W K N  PN   
Sbjct: 75  EFHHKWISVCRQILKPSGTIWISGTYHSIYQCGYELQKQGFRIINDICWFKPNAAPNLTR 134

Query: 143 RRFQNAHETLIWASP-------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           + F  +HET++WA                  ++       +  QMRS W IP     E++
Sbjct: 135 KCFTASHETILWAIKDPLQKQKYHYELMKNTDWMGDIINKKGKQMRSVWCIPTTPAREKI 194

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             K     HPTQKP ALL RI++SST  GD++LDPF GSGT+G VAKK  R++IGI++  
Sbjct: 195 HGK-----HPTQKPIALLERIILSSTDEGDLVLDPFNGSGTTGVVAKKYHRNYIGIDINI 249

Query: 256 DYIDIATKRIASV 268
           DY+ +  +RI   
Sbjct: 250 DYLKLTIERIKDT 262


>gi|324991367|gb|EGC23300.1| modification methylase BabI [Streptococcus sanguinis SK353]
 gi|325687054|gb|EGD29077.1| modification methylase BabI [Streptococcus sanguinis SK72]
          Length = 267

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 103/246 (41%), Positives = 144/246 (58%), Gaps = 6/246 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L ++  +S+D+IFADPPY L   G       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSQMKPESMDMIFADPPYFLSNGG-FSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+         G    + +    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDV-----WIGPLTKKAEKWAG 198

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 199 KHPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRIASV 268
           +R+   
Sbjct: 259 RRLEEE 264


>gi|332362311|gb|EGJ40111.1| modification methylase BabI [Streptococcus sanguinis SK1056]
          Length = 265

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 103/247 (41%), Positives = 145/247 (58%), Gaps = 6/247 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L ++  +S+D+IFADPPY L   G       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSQMKPESMDMIFADPPYFLSNGG-FSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRQWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+         G    + +    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDV-----WIGPLTKKAEKWAG 198

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 199 KHPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRIASVQ 269
           +R+   +
Sbjct: 259 RRLEEER 265


>gi|166032271|ref|ZP_02235100.1| hypothetical protein DORFOR_01974 [Dorea formicigenerans ATCC
           27755]
 gi|166027994|gb|EDR46751.1| hypothetical protein DORFOR_01974 [Dorea formicigenerans ATCC
           27755]
          Length = 270

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 102/258 (39%), Positives = 154/258 (59%), Gaps = 10/258 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK----FSS 77
           ++I G+S  +L K+  +SVD+IFADPPY L  +G +      +V     SWDK     +S
Sbjct: 19  QLIVGDSFKILTKMEPESVDMIFADPPYFLSNDG-ITCQGGKMVSVNKGSWDKLSESGTS 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E    F R W+  C++VLKPNGT+W+ G+ HNI+ IG  L+   F I+N+I W+K+NP 
Sbjct: 78  VEEKHKFNRKWIKLCKKVLKPNGTIWISGTLHNIYSIGMALEQEGFKIINNITWQKTNPP 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + F+Y  +K  N   QM+  W   +   SE+   
Sbjct: 138 PNLACRCFTHSTETILWAKKNDKKSRHFFDYQKMKEMNGGKQMKDVWTGALTKPSEKTEG 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKP+ LL +I+++ST+ G +ILDPF GSGT+G  A +  R FIGI++ ++Y
Sbjct: 198 K-----HPTQKPKYLLEKIVLASTEEGQVILDPFCGSGTTGVEAVRFGRKFIGIDVSEEY 252

Query: 258 IDIATKRIASVQPLGNIE 275
           ++I+ +R+  V       
Sbjct: 253 LEISKRRLEKVYGDAKEY 270


>gi|149917692|ref|ZP_01906188.1| DNA methylase N-4/N-6 [Plesiocystis pacifica SIR-1]
 gi|149821474|gb|EDM80874.1| DNA methylase N-4/N-6 [Plesiocystis pacifica SIR-1]
          Length = 348

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 143/244 (58%), Gaps = 7/244 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I+G+S+ +LE+LP  SVD+IFADPPY L   G         V      WD     +  
Sbjct: 88  RLIQGDSLDILEQLPEGSVDVIFADPPYFLSNGGT-TCQGGKRVSVNKGKWDASLGAQDN 146

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            AF + WL AC+RVL  NGT+WV G+ H IF +G  +Q L F +LNDIVW K NP PN  
Sbjct: 147 HAFNKRWLSACQRVLADNGTIWVSGTAHVIFSVGYAMQELGFKMLNDIVWEKPNPPPNLS 206

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ E ++WA+ + K+K Y ++Y  +K  N   QM++ W       SE+   K   
Sbjct: 207 CRYFTHSTELVLWAAKTRKSKHY-YDYQEMKLRNGGKQMKNVWRFTAPGKSEKTHGK--- 262

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L++S  P   +LDPF GSGT+G  A KL   + G+E + +Y+ ++
Sbjct: 263 --HPTQKPLALLDRLLMASCHPDARVLDPFNGSGTTGVAAAKLGLQYTGLEREPEYLALS 320

Query: 262 TKRI 265
             R+
Sbjct: 321 KARL 324


>gi|115375188|ref|ZP_01462455.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|310823140|ref|YP_003955498.1| adenine-specific DNA methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367839|gb|EAU66807.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|309396212|gb|ADO73671.1| adenine-specific DNA methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 289

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 102/263 (38%), Positives = 137/263 (52%), Gaps = 16/263 (6%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ +G+S+ +L + P +  DL+FADPPY L   G               +WD     E  
Sbjct: 27  KLYQGDSVELLNQFPEQQFDLVFADPPYFLSNGG-FTCKSGKRASVAKGAWDVSRGVEED 85

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             FT  WL AC+RVLKP GTLWV G+ H IF +G  +Q L F +LN + W K N  PN  
Sbjct: 86  HRFTTEWLKACQRVLKPTGTLWVSGTQHVIFNVGFAMQKLGFKLLNTVTWYKPNASPNLS 145

Query: 142 GRRFQNAHETLIWAS-PSPKAKGYTFNYDALKAANEDVQMRSDWLIP------------- 187
            R F ++ E LIWAS    K   +TFNY  +K  N   QMR  W +P             
Sbjct: 146 CRYFTHSTELLIWASPKPAKTLQHTFNYARMKTENGGKQMRDVWNLPRTGEEELSADGAG 205

Query: 188 -ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            + +     R +     HPTQKP ALL RI+ +ST     +LDPF GSGT+G  A KL R
Sbjct: 206 RMWTQIAPRREEKAFGSHPTQKPVALLERIIEASTPEDATVLDPFNGSGTTGVAALKLGR 265

Query: 247 SFIGIEMKQDYIDIATKRIASVQ 269
            + GI++   Y+ +  KR+ +V+
Sbjct: 266 RYTGIDLDPTYLSLTKKRLDAVK 288


>gi|315639073|ref|ZP_07894241.1| modification methylase BabI [Campylobacter upsaliensis JV21]
 gi|315480849|gb|EFU71485.1| modification methylase BabI [Campylobacter upsaliensis JV21]
          Length = 221

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 86/215 (40%), Positives = 128/215 (59%), Gaps = 1/215 (0%)

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
            A  S K   +TFNY  +K  N + Q +S W I IC G+ERL++K+G+K H TQKPEALL
Sbjct: 1   MAFWSIKNAKFTFNYKTMKFLNHNKQEKSIWNIGICIGNERLKDKNGKKAHSTQKPEALL 60

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            ++++SSTK G ++LDPFFG+GT+GAVAK+L R FIGIE  ++Y+ IA  RI  V  + +
Sbjct: 61  EKVILSSTKNGALVLDPFFGTGTTGAVAKRLGRHFIGIEQDENYVKIAKARIEQVC-VED 119

Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHR 333
            ELT    +   P+V+   L+  G ++  +   +   N    +  +  +    E+ SIH+
Sbjct: 120 NELTRNELEIKPPKVSLEKLLNAGFLKENERFYDKNQNFICYLVHNNKVSDNKEILSIHK 179

Query: 334 VGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           + AK       NGW+++Y  K  +L SI+ LR   
Sbjct: 180 MAAKYLNKANHNGWSYFYILKDEKLISIDALRYAY 214


>gi|291523889|emb|CBK89476.1| DNA modification methylase [Eubacterium rectale DSM 17629]
          Length = 270

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 155/258 (60%), Gaps = 10/258 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK----FSS 77
           +++ G+S  +L K+  +SVD+IFADPPY L  +G +      +V     SWDK     +S
Sbjct: 19  QLVLGDSFKILTKMKPESVDMIFADPPYFLSNDG-ITCQGGKMVSVNKGSWDKLSESGTS 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E    F R W+  C++VLKPNGT+W+ G+ HNI+ IG  L+   F I+N+I W+K+NP 
Sbjct: 78  VEEKHKFNRKWIRLCKKVLKPNGTIWISGTLHNIYSIGMALEQEGFKIINNITWQKTNPP 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + F+Y  +K  N   QM+  W   +   SE+   
Sbjct: 138 PNLACRCFTHSTETILWAKKNDKKSRHFFDYQKMKKMNGGKQMKDVWTGALTKPSEKTEG 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL +I+++ST+ G +ILDPF GSGT+G  A +  R F+GI++ ++Y
Sbjct: 198 K-----HPTQKPEYLLEKIVLASTEKGQVILDPFCGSGTTGVEAVRFGRKFVGIDVSEEY 252

Query: 258 IDIATKRIASVQPLGNIE 275
           ++I+ +R+  V+      
Sbjct: 253 LEISKRRLEKVKIDAKEH 270


>gi|57242503|ref|ZP_00370441.1| adenine specific DNA methyltransferase (HINFIM) [Campylobacter
           upsaliensis RM3195]
 gi|57016788|gb|EAL53571.1| adenine specific DNA methyltransferase (HINFIM) [Campylobacter
           upsaliensis RM3195]
          Length = 221

 Score =  192 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 85/215 (39%), Positives = 127/215 (59%), Gaps = 1/215 (0%)

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
            A  S K   +TFNY  +K  N + Q +S W I IC G+ERL++K+G+K H TQKPEALL
Sbjct: 1   MAFWSIKNTKFTFNYKTMKFLNHNKQEKSIWNIGICIGNERLKDKNGKKAHSTQKPEALL 60

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            ++++SSTK   ++LDPFFG+GT+GAVAK+L R FIGIE  ++Y+ IA  RI  V  + +
Sbjct: 61  EKVILSSTKKDALVLDPFFGTGTTGAVAKRLGRHFIGIEQDENYVKIAKARIKQVC-VED 119

Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHR 333
            ELT    +   P+V+   L+  G ++  +   +   N    +  +  +    E+ SIH+
Sbjct: 120 NELTRNELEIKPPKVSLEKLLNAGFLKENERFYDKNQNFICYLVHNNKVSDNKEILSIHK 179

Query: 334 VGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           + AK       NGW+++Y  K  +L SI+ LR   
Sbjct: 180 MAAKYLNKANYNGWSYFYILKDEKLISIDALRYAY 214


>gi|189485748|ref|YP_001956689.1| DNA modification methylase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287707|dbj|BAG14228.1| DNA modification methylase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 310

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 102/255 (40%), Positives = 140/255 (54%), Gaps = 13/255 (5%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G+ I +L+ LP  SV++IFADPPY L  NG         V      WD     E  
Sbjct: 14  TLYNGDCIEILKLLPIDSVNMIFADPPYFLS-NGSFTCHAGKRVSVKKGDWDLGGGTEKN 72

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F  AWL AC+RVLKPNGT+WV G+YH+I++ G  L+   +  LNDI+W K N  PN  
Sbjct: 73  LEFHIAWLKACKRVLKPNGTIWVSGTYHSIYQCGVALEINGYHFLNDIIWFKPNAAPNLS 132

Query: 142 GRRFQNAHETLIWASPSPKAKG-------YTFNYDALKAANEDVQMRSDWLIPICSGSER 194
            R F  +HET+IW+    K++            +       +  QMRS W I     SE+
Sbjct: 133 CRFFTASHETIIWSKKEKKSRHIFNYDLMKKGQWKEDLLKKDGSQMRSVWSIGTPKPSEK 192

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +  K     HPTQKP  LL RI+++ST+ GDIILDPF GS T+G  A    R FIGI+ +
Sbjct: 193 IFGK-----HPTQKPLDLLKRIVLASTEAGDIILDPFTGSSTTGIAAVTNGRMFIGIDKE 247

Query: 255 QDYIDIATKRIASVQ 269
           + Y++++ KR  ++ 
Sbjct: 248 KRYLELSVKRFENLN 262


>gi|238917688|ref|YP_002931205.1| site-specific DNA-methyltransferase (adenine-specific) [Eubacterium
           eligens ATCC 27750]
 gi|238873048|gb|ACR72758.1| site-specific DNA-methyltransferase (adenine-specific) [Eubacterium
           eligens ATCC 27750]
          Length = 267

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 102/252 (40%), Positives = 153/252 (60%), Gaps = 10/252 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK----FSS 77
           +++ G+S  +L K+  +SVD+IFADPPY L  +G +      +V     SWDK     + 
Sbjct: 19  QLVLGDSFKILTKMKPESVDMIFADPPYFLSNDG-ITCQGGKMVSVNKGSWDKLSESGTG 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E    F R W+  CR+VLKPNGT+W+ G+ HNI+ IG  L+   F I+N+I W+K+NP 
Sbjct: 78  VEEKHKFNRKWIKLCRKVLKPNGTIWISGTLHNIYSIGMALEQEGFKIINNITWQKTNPP 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + F+Y  +K  N   QM+  W   +   SE+   
Sbjct: 138 PNLACRCFTHSTETILWAQKNDKKSRHFFDYQKMKEMNGGKQMKDVWTGALTKPSEKTEG 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL +I+++ST+ G +ILDPF GSGT+G  A +  R FIGI++ ++Y
Sbjct: 198 K-----HPTQKPEYLLEKIVLASTEEGQVILDPFCGSGTTGVEAVRFGRKFIGIDVSEEY 252

Query: 258 IDIATKRIASVQ 269
           ++I+ +R+  V 
Sbjct: 253 LEISKRRLEKVA 264


>gi|254492921|ref|ZP_05106092.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae 1291]
 gi|268598172|ref|ZP_06132339.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae MS11]
 gi|268600516|ref|ZP_06134683.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID18]
 gi|268602749|ref|ZP_06136916.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID1]
 gi|268681298|ref|ZP_06148160.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID332]
 gi|291044684|ref|ZP_06570393.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae DGI2]
 gi|226511961|gb|EEH61306.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae 1291]
 gi|268582303|gb|EEZ46979.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae MS11]
 gi|268584647|gb|EEZ49323.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID18]
 gi|268586880|gb|EEZ51556.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID1]
 gi|268621582|gb|EEZ53982.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID332]
 gi|291011578|gb|EFE03574.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae DGI2]
          Length = 252

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/241 (40%), Positives = 143/241 (59%), Gaps = 11/241 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IFADPPY L  +G     +  +V     +WDK    
Sbjct: 19  LYNENSLNVMRKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 77

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 78  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPP 137

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ET++WA  + KA  +TF+Y+ +KA N   QM+  W  P  + +E+   K
Sbjct: 138 NLSCRFFTHSTETILWAKKNKKA-KHTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK 196

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP +LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D++
Sbjct: 197 -----HPTQKPLSLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFL 251

Query: 259 D 259
           +
Sbjct: 252 N 252


>gi|296126987|ref|YP_003634239.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
 gi|296018803|gb|ADG72040.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
          Length = 259

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 109/254 (42%), Positives = 156/254 (61%), Gaps = 14/254 (5%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           IIKG+ + VL+ +   S+D+IFADPPYNL  NG +      +V      WD+   FE   
Sbjct: 5   IIKGDCLEVLDTIEENSIDMIFADPPYNLSNNG-ITCHAGKMVSVNKGEWDRSLGFEEDT 63

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF  AW+  CRRVLK  GT+W+ G+ H+I++ G +L+ L F+ILNDIVW K N  PN   
Sbjct: 64  AFHEAWISKCRRVLKDEGTIWISGTNHSIYKCGYILEKLGFYILNDIVWYKPNAAPNLSC 123

Query: 143 RRFQNAHETLIWASPSPKAKGYT-------FNYDALKAANEDVQMRSDWLIPICSGSERL 195
           + F ++HET++WA  +  AK Y         +++  K  ++  QMRS W I   S SE++
Sbjct: 124 KVFTHSHETILWAKKNKNAKHYYNYDLMKNMDFEDDKLKSKGKQMRSVWSISAPSKSEKI 183

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMK 254
             K     HPTQKP  LL+RI+++STK  D ILDPF GSGT+ A  K +  R++IGIE+ 
Sbjct: 184 HGK-----HPTQKPLKLLTRIILASTKENDTILDPFNGSGTTAAACKIIGNRNYIGIEID 238

Query: 255 QDYIDIATKRIASV 268
           ++YI++  KR+  +
Sbjct: 239 ENYIELTNKRLNDI 252


>gi|306818165|ref|ZP_07451896.1| modification methylase BabI [Mobiluncus mulieris ATCC 35239]
 gi|304649129|gb|EFM46423.1| modification methylase BabI [Mobiluncus mulieris ATCC 35239]
          Length = 323

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/235 (40%), Positives = 138/235 (58%), Gaps = 6/235 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I  G++  +L ++   SVD+IFADPPY L   G +       V     +WD+    E  
Sbjct: 23  RIFLGDAFEILARIAQSSVDMIFADPPYFLSNGG-ISCSGGRQVSVNKGAWDRGMGTEEK 81

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R W+  C+RVLK +G++WV G++HNI+ +G  L+   F ILN+I W+K NP PN  
Sbjct: 82  HGFNRRWVRQCKRVLKRDGSIWVSGTFHNIYSLGFALEQEGFKILNNITWQKLNPPPNLA 141

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET+IWA  + +   + F+Y  +K  N   QM+  W   +   SE++  K   
Sbjct: 142 CRCFTHSTETVIWARKNERKARHFFDYPLMKTLNGGKQMKDVWAGTLTPKSEKICGK--- 198

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
             HPTQKPE LL RI+++ST+ GD++LDPF GSGT+  VAK+L R  IGIE    
Sbjct: 199 --HPTQKPEYLLERIILASTREGDLVLDPFVGSGTTAVVAKRLGRYSIGIETNFY 251


>gi|257456835|ref|ZP_05622019.1| DNA methylase [Treponema vincentii ATCC 35580]
 gi|257445841|gb|EEV20900.1| DNA methylase [Treponema vincentii ATCC 35580]
          Length = 304

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 100/262 (38%), Positives = 146/262 (55%), Gaps = 6/262 (2%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +  + I   + + VLE+LP +S+D+IFADPPY L  +G     +  +V      WDK  
Sbjct: 39  EDSVNTIFNIDCLEVLERLPDESIDMIFADPPYMLSNDG-FTCQNGRMVSVNKGKWDKSC 97

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E    F  AW+ ACRRVLKP GT+W+ G+YH+I++ G +LQ  NF ILNDI W K N 
Sbjct: 98  GLETDMQFHNAWIAACRRVLKPEGTIWISGTYHSIYQCGYLLQKNNFHILNDIAWFKPNA 157

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL---KAANEDVQMRSDWLIPICSGSE 193
            PN   R F  +HETLIWA    K+  +TFNYDA+       + ++     +  + S   
Sbjct: 158 APNLSCRFFTASHETLIWARKDKKS-KHTFNYDAMKNGFFPEDKLKKAHSQMRSVWSIPT 216

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIE 252
               +     HPTQKP +LL RI+++ST    IILDPF G GT+G  +  +  R +IGIE
Sbjct: 217 PPAGEKELGKHPTQKPLSLLKRIILASTNDNAIILDPFNGGGTTGIASTIIGKRYYIGIE 276

Query: 253 MKQDYIDIATKRIASVQPLGNI 274
           + ++Y ++  +++  +      
Sbjct: 277 IDKEYCELTKRKLMQISDDEEE 298


>gi|210620631|ref|ZP_03292155.1| hypothetical protein CLOHIR_00098 [Clostridium hiranonis DSM 13275]
 gi|210155240|gb|EEA86246.1| hypothetical protein CLOHIR_00098 [Clostridium hiranonis DSM 13275]
          Length = 267

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 107/255 (41%), Positives = 155/255 (60%), Gaps = 9/255 (3%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-- 74
            + K K+I G++ S+L K+  +S+D+IFADPPY L  NG +      +V     SWD   
Sbjct: 15  EDEKSKLILGDTFSILSKIKKESIDMIFADPPYFLSNNG-ITCSGGKMVSVNKGSWDTLN 73

Query: 75  -FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
             +S      F R W+  C+RVLKPNGT+W+ G+ HNI+ IG  L+   F I+N+I W+K
Sbjct: 74  LGNSVSEKHKFNRKWIKMCKRVLKPNGTIWISGTMHNIYSIGMALEQEGFKIINNITWQK 133

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NP PN   R F ++ ET++WA  + K   + FNY+ +K  N   QM+        +GS 
Sbjct: 134 TNPPPNLACRCFTHSTETVLWAKKNDKKSKHLFNYNDMKEMNGGKQMKDV-----WTGSL 188

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
             +++  E  HPTQKPE LL RI++SST+   IILDPF GSGT+G +AK+  R FIGI+ 
Sbjct: 189 TKKSEKSEGKHPTQKPEYLLERIVISSTEENQIILDPFCGSGTTGVIAKRYGRKFIGIDN 248

Query: 254 KQDYIDIATKRIASV 268
           + +Y++I  KR+   
Sbjct: 249 EIEYLNITKKRLEKE 263


>gi|296274511|ref|YP_003657142.1| DNA methylase N-4/N-6 domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098685|gb|ADG94635.1| DNA methylase N-4/N-6 domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 263

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 108/254 (42%), Positives = 147/254 (57%), Gaps = 14/254 (5%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  GN I +L+K+   S+D+IFADPPY L  NG +   +  +V      WDK    E   
Sbjct: 16  LYYGNCIEILKKIKKDSIDMIFADPPYGLSNNG-ITCKNGKMVSVNKGEWDKSKGIEEDF 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W+ AC+RVLKPNGT+W+ G+YH+I+  G  LQ   F +LN+I W K N  PN   
Sbjct: 75  KFHNQWIKACQRVLKPNGTIWISGTYHSIYACGYALQKNKFKVLNEISWFKPNAAPNLSC 134

Query: 143 RRFQNAHETLIWASP--------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + F  +HET+IWA          + K   +   +      NED QMRS W I   S  E+
Sbjct: 135 KYFTASHETIIWAIKESTQKHTYNYKTMKHGDWHKKDIIKNEDKQMRSVWSIATPSKKEK 194

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  K     HPTQKP  LL RI++SST   DIILDPF GS T+G VA +  R FIGI+M+
Sbjct: 195 LFGK-----HPTQKPIKLLERIILSSTNENDIILDPFTGSSTTGVVALQNNRQFIGIDME 249

Query: 255 QDYIDIATKRIASV 268
           ++Y++++ KRI ++
Sbjct: 250 KEYLNLSIKRIHNI 263


>gi|146297739|ref|YP_001181510.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411315|gb|ABP68319.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 270

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 91/262 (34%), Positives = 151/262 (57%), Gaps = 17/262 (6%)

Query: 21  DKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSL--VDAVTDSWDKFSS 77
           + I+ G+ +++++  +P++S+DLI+ADPPYNL     + + + +      + + WD +  
Sbjct: 4   NTILHGDCVTIMKEHIPSESIDLIYADPPYNLSGRDLILKNNKTGGPFYKMNEEWDSW-D 62

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           ++ Y  FT  WLLA   VLK NG+L++  +YHNI  +  + + + F + N + W K+N M
Sbjct: 63  YDKYCEFTYNWLLASYSVLKSNGSLYISCTYHNIGEVIFLAKKIGFKLNNILTWVKTNAM 122

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV----------QMRSDWLIP 187
           PN   R F++  E + W        G+ F+Y+ +K  N                  + +P
Sbjct: 123 PNITKRTFKHTTEFVCWFVK---GPGWKFHYNEIKMLNPRKTKDGSIKQMDDFFDFFEMP 179

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +  G ER+++ +G   HP QKPE LL  I+ +S+  GDI+LDPFFG+GT+G VA+++ R 
Sbjct: 180 LVQGKERIKSDNGRAAHPNQKPEKLLEIIITASSDEGDIVLDPFFGTGTTGVVAERMNRK 239

Query: 248 FIGIEMKQDYIDIATKRIASVQ 269
           +IGIE+ + YI IA KRI   +
Sbjct: 240 WIGIEINETYIKIAKKRIEEER 261


>gi|254457477|ref|ZP_05070905.1| DNA methylase [Campylobacterales bacterium GD 1]
 gi|207086269|gb|EDZ63553.1| DNA methylase [Campylobacterales bacterium GD 1]
          Length = 258

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 108/262 (41%), Positives = 150/262 (57%), Gaps = 21/262 (8%)

Query: 20  KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA----VTDSW 72
            D++   + I  L   +K+  +SV LIFADPPYNL   G   +   S        V + W
Sbjct: 3   LDQVYNADCIKTLNDTKKIAKESVQLIFADPPYNLS--GNALKSTGSKTGGDFTMVNEDW 60

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK    + +  FT  W+ +C+ +LKPNG++++  SYHN+      L+   F I N I W 
Sbjct: 61  DKMEE-QEFITFTNEWVKSCKDILKPNGSIFIACSYHNMGESIMSLKLNGFDIKNIITWN 119

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-------DVQMRSDWL 185
           KSN MPN   R   +  E +IWA      KG+ FNYD LK  N        D QMR  W 
Sbjct: 120 KSNAMPNLTRRVLTHTTEFVIWAVK---GKGWIFNYDILKELNPEKRQDGTDKQMRDIWT 176

Query: 186 IPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +P+C G ERLR+ DG+K LHPTQKPE LL RI++  +  GD++LDPF GSGT+  +AKK 
Sbjct: 177 LPLCQGKERLRDADGKKALHPTQKPEELLKRIILGFSNEGDLVLDPFGGSGTTPFIAKKY 236

Query: 245 RRSFIGIEMKQDYIDIATKRIA 266
           +R++I IE ++ Y D   +R++
Sbjct: 237 KRNYIAIEREKKYADAIRQRVS 258


>gi|225163822|ref|ZP_03726119.1| Site-specific DNA-methyltransferase (adenine-specific) [Opitutaceae
           bacterium TAV2]
 gi|224801580|gb|EEG19879.1| Site-specific DNA-methyltransferase (adenine-specific) [Opitutaceae
           bacterium TAV2]
          Length = 641

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 86/410 (20%), Positives = 155/410 (37%), Gaps = 68/410 (16%)

Query: 6   SLAINENQNS-IFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP- 60
           +L + E ++S + ++++++I G++  VL  L       VDLI+ DPP+++  +  +  P 
Sbjct: 62  ALDLFEKKSSRLDDFRNRLIWGDNKLVLASLLAEFKGKVDLIYIDPPFDVGADFTMSLPV 121

Query: 61  ---------DHSLVDA--VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
                    + S ++A    D W K +   +Y       L   + +L   G+++V   + 
Sbjct: 122 GDGKETLEKEQSTIEAVAYRDMWGKGTD--SYLHMMYERLSLMKELLSERGSIYVHCDHR 179

Query: 110 NIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP-------- 159
               +  ++  +       N ++W   N        +F + H+ L + + +         
Sbjct: 180 VDSLVRRVMDEIFSPERFRNQMIWWYRNSGMKAASDKFHHKHDVLYFYAKNSVFTFNGYR 239

Query: 160 ---------KAKGYTFNYDALKAA----NEDV---QMRSDWLIPICSGSERLRNKDGEKL 203
                    K + Y F+    K       E         D L         L+  D    
Sbjct: 240 EPLKDGDSGKRRAYKFDSKLKKPLPVYDKEGKPVYYQVGDILAGSVWDVPILQGGDENIG 299

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKPEALL RI+ +S+  GD++ D F GSGT+GAVA++L R +I  ++ +  I    K
Sbjct: 300 YPTQKPEALLERIIKASSNEGDLVADFFCGSGTTGAVAERLGRRWILADLGRFAIHTTRK 359

Query: 264 RIASVQPLGNIELTVLTGK----------------------RTEPRVAFNLLVERGLIQ- 300
           R+  +Q   +                                   RV         L Q 
Sbjct: 360 RLIQLQSELHSGEKPYRAFDVYNLGRYERQWWQKKQLLGADEEHRRVVLQFHGASALEQP 419

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSE-TCNGWNF 349
           P  +L  ++G     V    ++ +  EL  + +        E  C  W F
Sbjct: 420 PSPLLHGSKGGAVCHVDGIDSIFTRDELREVAKATVGTGAKELHCLAWEF 469


>gi|291460930|ref|ZP_06025961.2| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379913|gb|EFE87431.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 302

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 90/263 (34%), Positives = 144/263 (54%), Gaps = 10/263 (3%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS---- 76
           + II G  IS ++KLP   +DLI ADPPYNL    +    + + +  +  +W+K      
Sbjct: 19  NTIINGECISEMKKLPDSCIDLIIADPPYNLSKGNKWKWDNSTKLKGMGGNWNKVIQEWD 78

Query: 77  --SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             + ++Y  FT+ WL   +R+LKP G++W+ G+YHNI  I  + Q L   I+N+++W K 
Sbjct: 79  NFTLQSYILFTKEWLSESKRILKPTGSIWIFGTYHNIGIINVVCQLLEIEIINEVIWYKR 138

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD----ALKAANEDVQMRSDWLIPICS 190
           N  PN  GRR   +HET++W + + K + Y FNY+    A  + +    +          
Sbjct: 139 NAFPNLSGRRLTASHETILWCNKNGKKREYFFNYEFSKNADFSYDSLKSIGKQMRTVWDI 198

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            + + +++     HPTQKP  +L RI+  ++K  DIIL PF G+G+    AK   R +IG
Sbjct: 199 SNNKEKSELLYGKHPTQKPIRILKRIIELTSKENDIILAPFSGAGSECVAAKITGRKYIG 258

Query: 251 IEMKQDYIDIATKRIASVQPLGN 273
           IE+   Y DIA  R+A+++   +
Sbjct: 259 IEINDFYCDIANNRLANIKKNNS 281


>gi|218960496|ref|YP_001740271.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
           DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729153|emb|CAO80064.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
           DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 269

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 103/248 (41%), Positives = 144/248 (58%), Gaps = 15/248 (6%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+  G+++ ++++L +KS+DLIFADPPYNL     L      +      SWD        
Sbjct: 5   KLFNGDALEIIKQLQSKSIDLIFADPPYNLSGENHLTCKSGKIAKCDKGSWDHIDDI--- 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F + W+  C RVLK NGT+W+ G+ HN   IG +L+ LN WI+NDI+W K N  P  +
Sbjct: 62  DEFNKKWIEECIRVLKDNGTIWISGTLHNHPSIGVILKQLNLWIINDIIWFKPNAAPLIQ 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
             RF  + E +  A+    +K Y FNY+         QMR+ W          L  +  +
Sbjct: 122 KNRFVPSTELIWLAAK---SKQYYFNYEMAVRLANGKQMRNLW---------ELSAEKHK 169

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            +HPT+KPE LL RI++  +K  DIILDPF GSGT+GAVAK+L R+F+GIE+ Q Y +IA
Sbjct: 170 TMHPTEKPEKLLERIVLIGSKQEDIILDPFMGSGTTGAVAKRLNRNFVGIEIDQTYYNIA 229

Query: 262 TKRIASVQ 269
            KRI +  
Sbjct: 230 QKRIENTN 237


>gi|68480349|gb|AAY97905.1| Mva1269I methyltransferase [Kocuria varians]
          Length = 626

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 89/257 (34%), Positives = 135/257 (52%), Gaps = 11/257 (4%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK----- 74
           K++I   + I  ++ L   S+D+I ADPPYNL   G     +   +      WDK     
Sbjct: 4   KNEIYNMDCIEGMKLLKENSIDIIIADPPYNLSKGGNWSWKNEDNLKGFGGKWDKVMQNW 63

Query: 75  -FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                  Y  FT  WL   +R+LKP G+LWV G+YHNI  I   +Q L   ++N+++W K
Sbjct: 64  DNMPISDYFTFTLKWLSEAKRILKPTGSLWVFGTYHNIGIINFAMQILEIEMINEVIWFK 123

Query: 134 SNPMPNFRGRRFQNAHETLIWA-SPSPKAKGYTFNYDALKAANED----VQMRSDWLIPI 188
            N  PN  GRR   +HET+IWA S + K + Y FNY+  K  + D     Q         
Sbjct: 124 RNSFPNLSGRRLTASHETIIWAHSGTAKDREYFFNYEMSKNHDYDSDLIKQPLKQMRTVW 183

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
              + + + +     HPTQK E ++ R++  S K GD++L PF G+GT   VAKKL   +
Sbjct: 184 DIPNNKKKEELLYGKHPTQKVEKVIDRMIRISAKEGDLLLSPFCGAGTECVVAKKLGLDY 243

Query: 249 IGIEMKQDYIDIATKRI 265
           I  E++++Y++++  R+
Sbjct: 244 IAFELEEEYVNLSKTRL 260


>gi|300870838|ref|YP_003785709.1| DNA methylase N-4/N-6 domain-containing protein [Brachyspira
           pilosicoli 95/1000]
 gi|300688537|gb|ADK31208.1| DNA methylase N-4/N-6 domain protein [Brachyspira pilosicoli
           95/1000]
          Length = 260

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 101/260 (38%), Positives = 145/260 (55%), Gaps = 4/260 (1%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D +I GN + +L+ L   S+D+IFADPPYNL  NG         V      WD    F+
Sbjct: 1   MDTLINGNCLEILDTLEENSIDMIFADPPYNLSNNGT-TCHSGKRVSVNKGEWDISLGFD 59

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
              AF   W+  CRRVLK NGT+W+ G+ H+I++ G +L+ L F+ILNDI W K N  PN
Sbjct: 60  QDVAFHETWISKCRRVLKDNGTIWISGTNHSIYKCGFILEKLGFYILNDIAWYKPNAAPN 119

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFN--YDALKAANEDVQMRSDWLIPICSGSERLRN 197
                F ++HETLIWA  + KAK +        L    + ++ +   +  + S S   +N
Sbjct: 120 LSCNVFAHSHETLIWAKKNKKAKHFYNYDLMKNLDFEKDKLKSKGKQMRSVWSISTPAKN 179

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRRSFIGIEMKQD 256
           +     HPTQKP  LL RI+++STK  D ILDPF GSGT+    A    R++IGI++  +
Sbjct: 180 EKIYGKHPTQKPIDLLIRIILASTKDNDTILDPFNGSGTTAVACAMIGNRNYIGIDIDNN 239

Query: 257 YIDIATKRIASVQPLGNIEL 276
           YI++  KRI  ++     ++
Sbjct: 240 YIELTKKRIKDIENNIFEDI 259


>gi|326560996|gb|EGE11361.1| DNA methylase N-4/N-6 domain protein [Moraxella catarrhalis 7169]
          Length = 273

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 102/257 (39%), Positives = 148/257 (57%), Gaps = 7/257 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I +GN I ++    + S+D+IFADPPY L  +G L   +  +       WD   +  +  
Sbjct: 16  IYQGNCIDIMSHFQSNSIDMIFADPPYFLSNDG-LTFKNGIIQSVNKGEWDTNDNENSIY 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F+  W+   +R+LK NGT+W+ G++HNIF +G +L+  NF ILN I W K NP PNF  
Sbjct: 75  NFSHEWIAQSKRLLKDNGTIWISGTHHNIFTVGQLLKENNFKILNIITWEKPNPPPNFSC 134

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F  + E +IWA    K   Y F+YD +K  N D Q +  W +P     E+ + K    
Sbjct: 135 RYFTYSSEWIIWARKHSKIPHY-FDYDLMKKLNGDKQAKDVWRLPAVGSWEKTQGK---- 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  LLSRI++SST+ GD+ILDPF GSGT+G  A  L R FIGI+ + ++++++ 
Sbjct: 190 -HPTQKPLGLLSRIILSSTQKGDLILDPFSGSGTTGIAATILGRQFIGIDKELEFLELSK 248

Query: 263 KRIASVQPLGNIELTVL 279
           +R  ++ P    E    
Sbjct: 249 RRYQAITPKSKYEFKQK 265


>gi|257455789|ref|ZP_05621015.1| DNA methylase [Enhydrobacter aerosaccus SK60]
 gi|257446803|gb|EEV21820.1| DNA methylase [Enhydrobacter aerosaccus SK60]
          Length = 269

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 101/253 (39%), Positives = 149/253 (58%), Gaps = 9/253 (3%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           Q+ + ++   +++G+ + +L  +  KS+++IFADPPY L  +G L   +  +       W
Sbjct: 5   QSELQDF--TLLQGDCLHILPTIDDKSINMIFADPPYFLSNDG-LTVKNGMVQSVNKGEW 61

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DKFS       FT  WL   +R+L  NGT+W+ G++HNIF +G +L  LNF ILN I W 
Sbjct: 62  DKFSDDNEVYIFTYDWLSQAKRMLADNGTIWMSGTHHNIFTLGRVLSQLNFKILNMITWE 121

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K NP PNF  R F  + E +IWA  +PK   Y F+Y+ +K+ N D QM+  W +P  S  
Sbjct: 122 KPNPPPNFSCRYFTYSTEWIIWARKNPKIPHY-FDYELMKSLNGDKQMKDVWRLPAVSSW 180

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+   K     HPTQKP  LLSRI+++STK  D++LDPF GS T+G  A    R FIG++
Sbjct: 181 EKQFGK-----HPTQKPLGLLSRIVLASTKANDLVLDPFTGSSTTGIAANLFGRKFIGVD 235

Query: 253 MKQDYIDIATKRI 265
              +++ ++  R 
Sbjct: 236 QDSNFLTLSKNRY 248


>gi|294673721|ref|YP_003574337.1| DNA (cytosine-5-)-methyltransferase [Prevotella ruminicola 23]
 gi|294472635|gb|ADE82024.1| DNA (cytosine-5-)-methyltransferase [Prevotella ruminicola 23]
          Length = 414

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 147/243 (60%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +++G+ +SVL        D+IFADPPY L   G +   +  +V     +WDK  S E  
Sbjct: 16  TLVEGDCVSVLNAF-DFKFDMIFADPPYFLSNGG-ISVSNGKVVCVDKGAWDKAPSSEYI 73

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   WL AC+  LK NGT+W+ G++HNIF +   L  L F ILN + W K++P  N  
Sbjct: 74  DEFNHKWLSACKDKLKDNGTIWISGTHHNIFSVAEQLSELGFKILNVVTWNKTDPPDNVS 133

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F+++ E +IWA  S KA+ + +NY+ ++  N+  QM   W +P  S  E+   K   
Sbjct: 134 HRVFKHSAEYIIWAKKSKKAQ-HRYNYELMRQLNDGKQMTDVWRMPAVSKWEKSCGK--- 189

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP +LL+RI+++STK GD +LDPF GSGT+G  A  L R ++GI++++ ++++A
Sbjct: 190 --HPTQKPLSLLARIIMASTKEGDWVLDPFNGSGTTGVAASLLGRKYLGIDIEKSFLELA 247

Query: 262 TKR 264
            KR
Sbjct: 248 AKR 250


>gi|239998143|ref|ZP_04718067.1| putative modification methylase [Neisseria gonorrhoeae 35/02]
 gi|240015769|ref|ZP_04722309.1| putative modification methylase [Neisseria gonorrhoeae FA6140]
 gi|240079906|ref|ZP_04724449.1| putative modification methylase [Neisseria gonorrhoeae FA19]
 gi|240112113|ref|ZP_04726603.1| putative modification methylase [Neisseria gonorrhoeae MS11]
 gi|240114859|ref|ZP_04728921.1| putative modification methylase [Neisseria gonorrhoeae PID18]
 gi|240117062|ref|ZP_04731124.1| putative modification methylase [Neisseria gonorrhoeae PID1]
 gi|240122700|ref|ZP_04735656.1| putative modification methylase [Neisseria gonorrhoeae PID332]
 gi|260441326|ref|ZP_05795142.1| putative modification methylase [Neisseria gonorrhoeae DGI2]
 gi|268593992|ref|ZP_06128159.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596046|ref|ZP_06130213.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268547381|gb|EEZ42799.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549834|gb|EEZ44853.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|317165585|gb|ADV09126.1| putative modification methylase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 225

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 96/231 (41%), Positives = 138/231 (59%), Gaps = 7/231 (3%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
             +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   W
Sbjct: 2   RKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEW 60

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           L  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++
Sbjct: 61  LRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHS 120

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            ET++WA  + KA  +TF+Y+ +KA N   QM+  W  P  + +E+   K     HPTQK
Sbjct: 121 TETILWAKKNKKA-KHTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK-----HPTQK 174

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           P +LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+++
Sbjct: 175 PLSLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFLN 225


>gi|293397789|ref|ZP_06641995.1| DNA methylase [Neisseria gonorrhoeae F62]
 gi|291611735|gb|EFF40804.1| DNA methylase [Neisseria gonorrhoeae F62]
          Length = 225

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 96/231 (41%), Positives = 137/231 (59%), Gaps = 7/231 (3%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
             +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   W
Sbjct: 2   RKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEW 60

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           L  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++
Sbjct: 61  LRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHS 120

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            ET++WA  + KA  +TF+Y+ +KA N   QM+  W  P  + +E+   K     HPTQK
Sbjct: 121 TETILWAKKNKKA-KHTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK-----HPTQK 174

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           P  LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+++
Sbjct: 175 PLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFLN 225


>gi|59800480|ref|YP_207192.1| putative modification methylase [Neisseria gonorrhoeae FA 1090]
 gi|59717375|gb|AAW88780.1| putative modification methylase [Neisseria gonorrhoeae FA 1090]
          Length = 225

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 95/231 (41%), Positives = 136/231 (58%), Gaps = 7/231 (3%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
             +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   W
Sbjct: 2   RKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEW 60

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           L  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++
Sbjct: 61  LRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHS 120

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            ET++WA  + KA  +TF+Y+ +KA N   QM+  W     + +E+   K     HPTQK
Sbjct: 121 TETILWAKKNKKA-KHTFHYEMMKAQNNGKQMKCVWTFAPPNKTEKTFGK-----HPTQK 174

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           P  LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+++
Sbjct: 175 PLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFLN 225


>gi|323140475|ref|ZP_08075403.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
 gi|322415043|gb|EFY05834.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
          Length = 269

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 106/252 (42%), Positives = 148/252 (58%), Gaps = 10/252 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++ G++  +L+KL  +SVD+IFADPPY L  NG   R    +V     +WD     E  
Sbjct: 19  QLLLGDTFELLQKLRPESVDVIFADPPYFLSNNGITCRS-GKMVSVNKAAWDMVDDKEHM 77

Query: 82  D----AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                 F R W+  C++VLKPNGT+W+ G++HNIF IG  L+   F I+N+I W+K+NP 
Sbjct: 78  LANKHQFNRRWINLCKKVLKPNGTIWISGTFHNIFSIGMALEEEGFRIINNITWQKTNPP 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET+IWA    K   Y FNY  +K  N   QM+  W   +   SE+   
Sbjct: 138 PNLACRCFTHSTETIIWACKDDKKAKYFFNYALMKEINGGKQMKDVWTGSLTKPSEKKFG 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL RIL +ST+ G I+LDPF GSGT+G  A +   +FIGI+  ++Y
Sbjct: 198 K-----HPTQKPEYLLERILRASTQAGYIVLDPFCGSGTTGVEALRNGCNFIGIDNVEEY 252

Query: 258 IDIATKRIASVQ 269
           + +  KR+   Q
Sbjct: 253 LKLTQKRLDKEQ 264


>gi|462633|sp|P34721|MT1B_MORBO RecName: Full=Modification methylase MboIB; Short=M.MboIB; AltName:
           Full=Adenine-specific methyltransferase MboIB; AltName:
           Full=M.MboI C
 gi|303630|dbj|BAA03073.1| MboI methyltransferase C [Moraxella bovis]
          Length = 273

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 103/260 (39%), Positives = 146/260 (56%), Gaps = 7/260 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I +GN I  +      S+D+IFADPPY L  +G L   +  +       WDK  +  +  
Sbjct: 16  IYQGNCIDFMSHFQDNSIDMIFADPPYFLSNDG-LTFKNSIIQSVNKGEWDKNDNEASIY 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W+   R++LK NGT+W+ G++HNIF +G +L+  NF ILN I W K NP PNF  
Sbjct: 75  NFNHEWIAQARQLLKDNGTIWISGTHHNIFTVGQVLKENNFKILNIITWEKPNPPPNFSC 134

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F  + E +IWA    K   Y FNYD +K  N D Q +  W +P     E+ + K    
Sbjct: 135 RYFTYSSEWIIWARKHSKIPHY-FNYDLMKKLNGDKQQKDIWRLPAVGSWEKTQGK---- 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  LLSRI++SST+  D+ILDPF GSGT+G     L R++IGIE + ++++++ 
Sbjct: 190 -HPTQKPLGLLSRIILSSTQKDDLILDPFSGSGTTGIAGVLLDRNYIGIEQELEFLELSK 248

Query: 263 KRIASVQPLGNIELTVLTGK 282
           +R   + P+   E      K
Sbjct: 249 RRYHEITPVLKNEFKQKIRK 268


>gi|108763695|ref|YP_633292.1| putative adenine-specific DNA methyltransferase [Myxococcus xanthus
           DK 1622]
 gi|108467575|gb|ABF92760.1| putative adenine-specific DNA methyltransferase [Myxococcus xanthus
           DK 1622]
          Length = 294

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/261 (38%), Positives = 137/261 (52%), Gaps = 17/261 (6%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++ G+S+ ++ +   ++ D+IFADPPY L   G   +     V      WD     E  
Sbjct: 30  TLLHGDSLELMSQFEPQTFDMIFADPPYFLSNGGTTCKG-GKRVSVAKGGWDVSRGVEED 88

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             FT  WL AC+R+LKP GTLWV G+ H IF  G  +Q L + +LN + W K N  PN  
Sbjct: 89  HKFTTEWLAACQRLLKPTGTLWVSGTQHVIFNAGFAMQKLGYKLLNTVTWFKPNASPNLA 148

Query: 142 GRRFQNAHETLIWAS-PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE------- 193
            R F ++ E LIWAS  S     +TFNY  +KA N   QMR  W +P    +E       
Sbjct: 149 CRYFTHSTELLIWASPKSGGKLQHTFNYARMKAENGGKQMRDAWALPPSGDAELTADGEG 208

Query: 194 --------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                   R   +     HPTQKP ALL RIL +S  P  ++LDPF GSGTSG  A KL 
Sbjct: 209 RMWTLTVPRGGEEKAFGSHPTQKPVALLERILEASCPPDALVLDPFNGSGTSGVAALKLG 268

Query: 246 RSFIGIEMKQDYIDIATKRIA 266
             ++GI+M + Y+ ++ KR+ 
Sbjct: 269 HRYVGIDMDEKYLALSEKRLN 289


>gi|330995399|ref|ZP_08319309.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
 gi|329575894|gb|EGG57418.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
          Length = 289

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 94/240 (39%), Positives = 126/240 (52%), Gaps = 8/240 (3%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
            G+   +L+       D+IFADPPY L   G +      +V      WDK  S E   AF
Sbjct: 17  HGDCFKLLKDF-DFKFDMIFADPPYFLSNGG-ISLQRGKVVCVDKGDWDKGKSQEDMLAF 74

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
              WL  CR  LK NGT+W+ G+YHNIF +   L  L + ILN + W+K+NP  N   R 
Sbjct: 75  NMEWLRLCRDKLKDNGTIWISGTYHNIFSVANCLTELGYKILNVVTWQKTNPPANISCRF 134

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           F  + E +IWA    K   + FNYD +K  N+  QM   W +P     E+   K     H
Sbjct: 135 FTYSTEFVIWARKMQK-IPHKFNYDLMKELNDGKQMTDVWRMPAIGRWEKTCGK-----H 188

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PTQKP  LL R++++ST  GD ILDPF GS T+G  A    R F G+E ++D+  ++  R
Sbjct: 189 PTQKPLRLLVRMILASTNQGDWILDPFSGSSTTGIAANLCGRRFAGLEQEEDFCKLSKAR 248


>gi|108805939|ref|YP_645876.1| DNA methylase N-4/N-6 [Rubrobacter xylanophilus DSM 9941]
 gi|108767182|gb|ABG06064.1| DNA methylase N-4/N-6 [Rubrobacter xylanophilus DSM 9941]
          Length = 266

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 94/244 (38%), Positives = 138/244 (56%), Gaps = 9/244 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + + ++  +P   VD IFADPPY L     +      L       WD+        
Sbjct: 16  VYLADCVELMRLMPPGGVDAIFADPPYRLSGG-GVTVRGGRLAPVDKGEWDRPLGHRGNH 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL   RRVL+P G++WV G++H IF +G  LQ+L F ++N +VW K +P PN   
Sbjct: 75  EFNLRWLREARRVLRPGGSIWVSGTHHIIFSLGFALQSLGFRLINSVVWEKPDPPPNALR 134

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
             F +AHETLIWAS     +G+TFN+D L   +   Q+ S W +P    +ERL       
Sbjct: 135 TAFTHAHETLIWASK---GRGHTFNHDLLNGPDPTSQLSSVWRMPPPPSAERLHGY---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  L+ R L++ST+ G+++ DPF GSGT+   AK+L R F+G E++++Y ++A 
Sbjct: 188 -HPTQKPLRLVRRALLASTREGELVFDPFTGSGTTAVAAKELGRFFVGAELEREYAELAG 246

Query: 263 KRIA 266
           +RI 
Sbjct: 247 RRIR 250


>gi|86159277|ref|YP_466062.1| DNA methylase N-4/N-6 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775788|gb|ABC82625.1| DNA methylase N-4/N-6 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 285

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 103/262 (39%), Positives = 137/262 (52%), Gaps = 12/262 (4%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ +  LE+LP  SVD+ FADPPY L   G               SWD    F A  
Sbjct: 25  LVQGDCVEALERLPPHSVDVAFADPPYMLSNGG-STCQGGRRTSVNKGSWDASGGFAADH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF   WL A R+VLKP+GTLWV G+ H IF IG  +Q + F +LN + W K N  PN   
Sbjct: 84  AFQARWLQAVRKVLKPSGTLWVSGTQHVIFSIGYAMQEMGFHLLNTVTWYKPNASPNLAC 143

Query: 143 RRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDW----------LIPICSG 191
           R F ++ E L+WASP       + FNY A+K AN   QMR  W             + S 
Sbjct: 144 RFFTHSTEILLWASPMKTRPLAHRFNYRAMKTANGGKQMRDLWEIADRPAPGGDQVVWSV 203

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                 +     HPTQKP ALL R+L +S  PGD++LDPF GSGT+G  A +    F+G+
Sbjct: 204 PTPGPREKVHGRHPTQKPLALLERVLAASAAPGDLVLDPFSGSGTTGVAALRAGCRFLGL 263

Query: 252 EMKQDYIDIATKRIASVQPLGN 273
           E    Y+D+A +R+ +      
Sbjct: 264 ERDPSYVDLAARRLRATAIDPE 285


>gi|315612933|ref|ZP_07887844.1| adenine specific DNA methylase [Streptococcus sanguinis ATCC 49296]
 gi|315315043|gb|EFU63084.1| adenine specific DNA methylase [Streptococcus sanguinis ATCC 49296]
          Length = 598

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/407 (18%), Positives = 153/407 (37%), Gaps = 73/407 (17%)

Query: 17  FEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQL---------YRPDHSL 64
             W +KI  G+++ V+  +  +    +DLI+ DPP++ + + +             D S 
Sbjct: 55  DNWINKIFWGDNLQVMSHMLKEYRGKIDLIYIDPPFDSKADYKKKIEIKGVGKTEADSSS 114

Query: 65  VDA--VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-L 121
            +     D W    + + Y  F    L+  R +L  +GT+++   +H    +  ++    
Sbjct: 115 FEEKQYGDIW----TNDEYLQFMYERLILLRELLSDSGTIFLHCDWHKSHHLRMLMDEVF 170

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
           +     D +      + +   + F+  H+T++  S +              + +   + +
Sbjct: 171 SPNNFIDEIVWGYEDIGSRAVKYFKRKHDTILMYSKTASEDRTFNILRKRLSESTIKRYQ 230

Query: 182 SDWLIPICSGSERLRNKD------------------------------------------ 199
           S +        ++L++ +                                          
Sbjct: 231 SYFDDDGKISYQKLKDTNPGVFAKLKGIPEDLSETWLDINNGAPLSDWWVDISALKNGFA 290

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               +PTQKPEALL RI+++S+ PGD++ D F GSGT+ AVA +L R FIG ++    + 
Sbjct: 291 EATGYPTQKPEALLERIIMASSNPGDLVFDCFMGSGTTQAVAMRLGRRFIGSDINLGAVQ 350

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA------QGNIS 313
            ATKR+ ++                E     N    R  I+   ++  A      +    
Sbjct: 351 TATKRLINLAKEIQ---LDDIYDNLEVYNVNNYDFFRNPIEAKNLIVEALEIQPFKQGNI 407

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
                DG ++   ++  ++R+  K    E      +  +EK+ E + 
Sbjct: 408 WDGELDGRMV---KIMPVNRIATKADLEELKANLPYKTYEKIKEENP 451


>gi|153005643|ref|YP_001379968.1| DNA methylase N-4/N-6 domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029216|gb|ABS26984.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 282

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 108/259 (41%), Positives = 138/259 (53%), Gaps = 9/259 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ I  LE LP  SVD+ FADPPY L   G                WD         
Sbjct: 25  LVQGDCIEALEALPPHSVDVAFADPPYMLSNGGT-TCQSGRRTSVNKGQWDASRGVVEDH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF   WL A RRVLKP+GTLWV G+ H IF IG  +Q L + +LN I W K N  PN   
Sbjct: 84  AFQTRWLTAVRRVLKPSGTLWVSGTQHVIFSIGFAMQELGYHLLNTITWYKPNASPNLAC 143

Query: 143 RRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN---- 197
           R F ++ E L+WASP      G+ FNY A+KA N   QMR  W IP   G + + +    
Sbjct: 144 RFFTHSTEILLWASPMRTRPLGHRFNYKAMKAENGGKQMRDLWQIPAPEGDQVVWSVPTP 203

Query: 198 ---KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              +     HPTQKP ALL R+L SS   GD++LDPF GSGT+G  A K    F+G+E  
Sbjct: 204 GPREKVHGRHPTQKPLALLERVLASSAAAGDLVLDPFSGSGTTGVAAVKAGCRFLGLERD 263

Query: 255 QDYIDIATKRIASVQPLGN 273
             Y+D+A +R+ + Q    
Sbjct: 264 PAYVDLAARRMRAAQLDPE 282


>gi|152981599|ref|YP_001354977.1| DNA modification methylase [Janthinobacterium sp. Marseille]
 gi|151281676|gb|ABR90086.1| DNA modification methylase [Janthinobacterium sp. Marseille]
          Length = 273

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/280 (26%), Positives = 132/280 (47%), Gaps = 27/280 (9%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W+D+I   ++++ L ++P  ++DLI ADPPY L  +      D   +DA           
Sbjct: 4   WRDRIFCEDALAGLARIPDAAIDLIIADPPYGLGKDYG---NDSDKLDA----------- 49

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AY ++   W+ A    LKPNG+L++  ++     +  ML+     +LN+IVW +  P  
Sbjct: 50  DAYLSWMEQWIDAALPKLKPNGSLYIFLTWRYSPEVFVMLKKRMT-MLNEIVWDRRVPSM 108

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIP 187
               R+F + H+T+ + + +                 T    +         +   +   
Sbjct: 109 GGGTRKFSSVHDTIGFFAKAKDYYFDLDAVRIPYDAETKKARSRSIFVGAKWLEMGYNPK 168

Query: 188 ICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 RL  +  E+  HPTQKP  ++ R+L +S  PG ++LDPF GSGT+ A AK+  R
Sbjct: 169 DVWSVSRLHKEHRERADHPTQKPLEIVERMLKASCPPGGVVLDPFMGSGTTAAAAKRCGR 228

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
            F+G E+  +Y ++  KR+ +++ +    +    G+   P
Sbjct: 229 HFVGFELNAEYCEMIEKRLQALESIPASNIAPAPGQELNP 268


>gi|162447937|ref|YP_001621069.1| DNA methylase [Acholeplasma laidlawii PG-8A]
 gi|161986044|gb|ABX81693.1| DNA methylase [Acholeplasma laidlawii PG-8A]
          Length = 256

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 99/251 (39%), Positives = 152/251 (60%), Gaps = 10/251 (3%)

Query: 18  EWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + ++ K+  G+S  +L++L  KSVD+IFADPPY L  NG +      +V     +WDK  
Sbjct: 7   DNRNAKLYLGDSFEILDELDEKSVDMIFADPPYFLSNNG-ITCQGGKMVSVNKATWDKTE 65

Query: 77  -SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            + E    +   WL  C+R+LK  GT+W+ G+ HNI+ IG  L+   F I+N+I W K+N
Sbjct: 66  MTIEEKIKYNTTWLNKCKRILKDTGTIWISGTLHNIYIIGVCLELEGFQIINNITWEKTN 125

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P P+   + F ++ ET++WA    K     F+Y  +K+ N + QM+  W   +   SE+ 
Sbjct: 126 PPPHLARKAFTHSTETVLWARK--KGSKNYFDYSLMKSLNNNKQMKDVWRFSLTKPSEKR 183

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             K     HPTQKP ALL RI+++STK GD++LDPF GSGT+G  +  L R +IGI+ ++
Sbjct: 184 LGK-----HPTQKPLALLERIILASTKEGDVVLDPFSGSGTTGVASIMLNRKYIGIDFEK 238

Query: 256 DYIDIATKRIA 266
           DY++++ KR+ 
Sbjct: 239 DYLNLSIKRLE 249


>gi|187251096|ref|YP_001875578.1| DNA methylase N-4/N-6 domain-containing protein [Elusimicrobium
           minutum Pei191]
 gi|186971256|gb|ACC98241.1| DNA methylase N-4/N-6 domain protein [Elusimicrobium minutum
           Pei191]
          Length = 266

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 100/255 (39%), Positives = 151/255 (59%), Gaps = 5/255 (1%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I GNSI V++  P +S D+IFADPPY L   G               SWDK + F++ 
Sbjct: 14  KLILGNSIDVIKSFPDESCDMIFADPPYMLSNGG-FTVQSGKRASVNKGSWDKSNGFDSD 72

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F   W+  C+R+LK NGT+W+ G+YH+I++ G  LQ  N+ ILNDI W K N  PN  
Sbjct: 73  FEFHNNWIKECKRILKKNGTIWISGTYHSIYQCGFALQKNNYHILNDIAWFKPNAAPNLS 132

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL---KAANEDVQMRSDWLIPICSGSERLRNK 198
            R F  +HETLIWA  + K   +TFNYD +     + + ++  +  +  + + +   +++
Sbjct: 133 CRFFTASHETLIWARKN-KIGKHTFNYDKVKNGIWSEDFLKKPNLQMRSVWAINTPKKSE 191

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP  L+ RI++SSTK  D+ILDPF GS T+G  A   +R+FIGI+++Q Y+
Sbjct: 192 KVFGKHPTQKPFDLMRRIILSSTKENDLILDPFTGSSTTGLAATYYKRNFIGIDIEQKYL 251

Query: 259 DIATKRIASVQPLGN 273
           +++ KR   ++ +  
Sbjct: 252 ELSKKRYEQLRSMKK 266


>gi|260577363|ref|ZP_05845334.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
 gi|259020436|gb|EEW23761.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
          Length = 310

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/255 (32%), Positives = 124/255 (48%), Gaps = 10/255 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF------ 75
           ++  GN I ++ +LP +SVD+I ADPPYN     +L     + +     SW K       
Sbjct: 54  RVYHGNFIEMVSQLPDQSVDIIIADPPYNASKGNELTMQYGT-LPGFGGSWRKIAQVWDD 112

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            S   Y AFT +WL   RRVLKP G++WV G+YH+       +Q L   I+N+IVW K N
Sbjct: 113 MSLHDYLAFTLSWLTEARRVLKPTGSMWVHGTYHSAGVTNVAMQMLEVEIINEIVWYKRN 172

Query: 136 PMPNFRGRRFQNAHETLIWAS---PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
             PN  GRR   +HET++WA           Y  +     + ++               +
Sbjct: 173 SFPNLAGRRLTASHETILWAHRGGKRAYRFNYEHSKFGDFSDDDLKSPGKQMRTVWDLPN 232

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
            + R++     HP QKP  L  R +  S  PGD+ L PF GSG+    A++    FIG +
Sbjct: 233 NKPRHEQAHGKHPAQKPVRLAKRFIELSAGPGDLCLVPFAGSGSECVAAQEAGLHFIGFD 292

Query: 253 MKQDYIDIATKRIAS 267
             + Y++IA  R++ 
Sbjct: 293 TDESYVEIARARLSR 307


>gi|315453579|ref|YP_004073849.1| DNA methylase N-4/N-6 domain-containing protein [Helicobacter felis
           ATCC 49179]
 gi|315132631|emb|CBY83259.1| DNA methylase N-4/N-6 domain [Helicobacter felis ATCC 49179]
          Length = 266

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 104/243 (42%), Positives = 144/243 (59%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+   +   VL  L    VDLIFADPPY L   G L      +V     +WDK    E  
Sbjct: 14  KLYHADCKEVLPHLQ-GQVDLIFADPPYFLSNGG-LSIQSGQIVSVDKGAWDKSQGLEHM 71

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            AF   WL   +  LKP G+L++  +YHN+F +G  LQ+L F ++N I W KSNP PNF 
Sbjct: 72  HAFNMEWLGLAKDALKPTGSLFISATYHNLFSLGLALQSLGFKLINLITWHKSNPPPNFS 131

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   +A E ++WA  SPK   + FNY+ +KA NE+ QMR  W +P  +  E+   K   
Sbjct: 132 CRTLVHASEQILWARKSPK-HAHIFNYEHMKALNENKQMRDVWTLPAIAPWEKKLGK--- 187

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP +LL+R++V +++   +I DPF GSG++G  A  L RSF+GIE +Q++I++A
Sbjct: 188 --HPTQKPLSLLTRLIVMASQQESLICDPFSGSGSTGIAANLLGRSFVGIEREQEFIELA 245

Query: 262 TKR 264
           TKR
Sbjct: 246 TKR 248


>gi|229175133|ref|ZP_04302649.1| DNA methylase N-4/N-6 domain protein [Bacillus cereus MM3]
 gi|228608269|gb|EEK65575.1| DNA methylase N-4/N-6 domain protein [Bacillus cereus MM3]
          Length = 607

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 152/412 (36%), Gaps = 74/412 (17%)

Query: 18  EWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDS 71
           +W +KI  G+++ V+  L  +    V L++ DPP++ +   +     +  +   D  +  
Sbjct: 52  DWINKIFWGDNLQVMSHLLKEYRGKVKLVYIDPPFDSKAFYKKQIKVKGKNINNDYNSFE 111

Query: 72  WDKFSS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
             ++S     + +  F    L+  R +L  +G++++   Y  + +I  ++  +       
Sbjct: 112 EKQYSDMWVNDEFLQFLYERLILIRELLSDDGSIYLHCDYRKVHQIRCIMDEVFGEDNFL 171

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
                S    +     ++ +H  +++            +   L+  +E       +    
Sbjct: 172 NSIVWSFSTRSSIKTSWKRSHHDILFYKKGKNPVYNWDDEMVLEPLSESTI--KKYKHED 229

Query: 189 CSGSERL-------------RNKDGE---------------------------------- 201
             G  RL             ++ D +                                  
Sbjct: 230 EIGKYRLNGRFIKDSPIKGAKDVDPKWEKTNPELVVRDYLREGKVASDYFFIDIENQSAS 289

Query: 202 --KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               +PTQKPE LL +++ +S+KPGDI++D F GSGT+ AVA K  R FIG ++    I 
Sbjct: 290 TRTDYPTQKPEELLYKLISASSKPGDIVMDCFMGSGTTLAVAMKTGRKFIGADINLGSIQ 349

Query: 260 IATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLVERGLIQPGQILTNA------ 308
             TKR+  V+   N    +   +       E     N  + R  ++  ++L  A      
Sbjct: 350 TTTKRLLKVRNEINSNNNIFEIESELFTGIEVYNVNNYDIFRNPVEAKELLIEALEIQPL 409

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
            GN       DG ++   ++  I+R+  K   ++     ++   E     + 
Sbjct: 410 DGNNVFDGEKDGYMV---KILPINRIATKADLNDIIANLDYKTLEIRQRENP 458


>gi|160888276|ref|ZP_02069279.1| hypothetical protein BACUNI_00686 [Bacteroides uniformis ATCC 8492]
 gi|317480155|ref|ZP_07939265.1| DNA methylase [Bacteroides sp. 4_1_36]
 gi|156862222|gb|EDO55653.1| hypothetical protein BACUNI_00686 [Bacteroides uniformis ATCC 8492]
 gi|316903702|gb|EFV25546.1| DNA methylase [Bacteroides sp. 4_1_36]
          Length = 290

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 100/261 (38%), Positives = 147/261 (56%), Gaps = 8/261 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++ G+ I +L++  +   D+IFADPPY L   G +      +V      WDK  + E  
Sbjct: 13  TLLHGDCIELLKQF-SFKFDMIFADPPYFLSNGG-ISVQSGKMVCVDKGEWDKGGTPEYI 70

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D+F RAW+  C+  LK NGT+W+ G+YHNIF I  +L  L F ILN + W K+NP PN  
Sbjct: 71  DSFNRAWISECQNKLKENGTIWISGTYHNIFSIANILTELGFKILNVVTWAKTNPPPNIS 130

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ E +IWA  S K   Y +NY  +K  N + QM   W +P  +  E+   K   
Sbjct: 131 CRYFTHSTEFIIWARKSAKITHY-YNYSIMKQINSNKQMTDVWQLPAIARWEKSCGK--- 186

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ++LSRI+++ST+ G  ILDPF GS T+G  A  L R F+GI+ +++Y+ ++
Sbjct: 187 --HPTQKPLSVLSRIILASTRGGAWILDPFTGSSTTGIAANLLGRRFLGIDREEEYLILS 244

Query: 262 TKRIASVQPLGNIELTVLTGK 282
             R   ++ +    L     K
Sbjct: 245 KNRKKEIEQIAKFSLYHKKIK 265


>gi|328948545|ref|YP_004365882.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
 gi|328448869|gb|AEB14585.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
          Length = 292

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 99/254 (38%), Positives = 147/254 (57%), Gaps = 11/254 (4%)

Query: 14  NSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           +S+++  ++   +++G+ + +L +      D+IFADPPY L   G +       V     
Sbjct: 3   HSLYKSLNRDFTLLQGDCVELLNQF-DFKFDMIFADPPYFLSNGG-ISVQSGKQVSVNKG 60

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            WDK   FE  + F R WL ACR  LK +GT+W+ G+YHNIF +  ML  L+F ILN + 
Sbjct: 61  GWDKSHGFEKDNEFNRKWLSACRSHLKDDGTIWISGTYHNIFSVALMLNELDFRILNCVT 120

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+NP PN   R F ++ E ++WA  S K   Y FNY+ +K  N   QMR  W++P  +
Sbjct: 121 WAKTNPPPNLSCRFFTHSTEFILWARKSKKVPHY-FNYELMKEINGGTQMRDLWILPAIA 179

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             E+   K     HPTQKP  LL+RI+++STK    ILDPF GS T+G  A  L R F+G
Sbjct: 180 KWEKSCGK-----HPTQKPLPLLARIILASTKENVWILDPFTGSSTTGIAASLLNRRFLG 234

Query: 251 IEMKQDYIDIATKR 264
           I+ + ++++++  R
Sbjct: 235 IDRETEFLELSKAR 248


>gi|134096223|ref|YP_001101298.1| putative DNA-methyltransferase [Herminiimonas arsenicoxydans]
 gi|133740126|emb|CAL63177.1| Putative DNA methylase [Herminiimonas arsenicoxydans]
          Length = 269

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 129/282 (45%), Gaps = 27/282 (9%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + +W++++   ++++ L ++P  +VDLI ADPPY L  +      D   + A        
Sbjct: 1   MSDWRNRVFCEDALAGLARIPDAAVDLIIADPPYGLGKDYG---NDSDKLAA-------- 49

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              EAY  +   W+ A    LKPNG+L++  ++     +  ML+     ++N+I+W +  
Sbjct: 50  ---EAYLQWMEQWIDAALPKLKPNGSLYIFLTWRYSPEVFVMLKKRMT-MINEIIWDRRV 105

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKG-----------YTFNYDALKAANEDVQMRSDW 184
           P      RRF + H+T+ + + +                 T    +         +   +
Sbjct: 106 PSMGGSTRRFSSVHDTVGFFAGAKDYYFDLDAIRVPYDAVTKKARSRSIFVGAKWLELGY 165

Query: 185 LIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                    RL  +  E+  HPTQKP  ++ R+L +S  P  ++LDPF GSGT+   AK+
Sbjct: 166 NPKDVWSVSRLHREHRERADHPTQKPLEIIERMLKASCPPDGVVLDPFMGSGTTAVAAKR 225

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
             R F+G E+  +Y  +  KR+A++ PL  ++         E
Sbjct: 226 CGRHFVGFELNAEYCALIEKRLAALVPLETVDAETAGSAIVE 267


>gi|300313354|ref|YP_003777446.1| DNA-methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300076139|gb|ADJ65538.1| DNA-methyltransferase (DNA-modification methylase) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/272 (26%), Positives = 126/272 (46%), Gaps = 30/272 (11%)

Query: 19  WKDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           W D++   +++S    L ++P  SVDL+ ADPPY L  +               +  DK 
Sbjct: 13  WLDRVFCEDALSAVGGLARIPDGSVDLMIADPPYGLGKDYG-------------NDSDKL 59

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            +  AY A+T  W+ A    LKPNG+L++  ++ N   I  ML+     ++N+I+W +  
Sbjct: 60  DT-AAYLAWTEQWVDAALPKLKPNGSLYIFLTWRNSPEIFVMLKQRMT-MINEIIWDRRV 117

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKG-----------YTFNYDALKAANEDVQMRSDW 184
           P      RR+ + H+T+ + + +                 T    +         +   +
Sbjct: 118 PSMGGSTRRYSSVHDTIGFFARAKDYFFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGY 177

Query: 185 LIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                    RL  +  E+  HPTQKP  ++ R++ +S  PG ++LDPF GSGT+   A++
Sbjct: 178 NPKDVWSVSRLHREHKERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARR 237

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
             R F G E+  DY ++  +R+ ++ P    +
Sbjct: 238 CGRHFTGFELNPDYCELIRQRLDALAPAHQDD 269


>gi|323173479|gb|EFZ59108.1| hypothetical protein ECLT68_1794 [Escherichia coli LT-68]
          Length = 315

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 33/279 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            FIGIE+  +YI +  +R+         EL  +  +R  
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKERRA 276


>gi|220918133|ref|YP_002493437.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955987|gb|ACL66371.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 286

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 103/262 (39%), Positives = 136/262 (51%), Gaps = 12/262 (4%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ +  LE+LP  SVD+ FADPPY L   G               SWD    F A  
Sbjct: 26  LVQGDCVEALERLPPHSVDVAFADPPYMLSNGG-STCQGGRRTSVNKGSWDASGGFAADH 84

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF   WL A R+VLKP+GTLWV G+ H IF IG  +Q L F +LN + W K N  PN   
Sbjct: 85  AFQARWLQAVRKVLKPSGTLWVSGTQHVIFSIGYAMQELGFHLLNTVTWYKPNASPNLAC 144

Query: 143 RRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDW----------LIPICSG 191
           R F ++ E L+WASP       + FNY A+K AN   QMR  W             + S 
Sbjct: 145 RFFTHSTEILLWASPMKARPLAHRFNYRAMKTANGGKQMRDLWEIADRPAPGGDQVVWSV 204

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                 +     HPTQKP ALL R+L +S  PGD++LDPF GS T+G  A +    F+G+
Sbjct: 205 PTPGPREKVHGRHPTQKPLALLERVLAASAAPGDLVLDPFSGSATTGVAALRAGCRFLGL 264

Query: 252 EMKQDYIDIATKRIASVQPLGN 273
           E    Y+D+A +R+ +      
Sbjct: 265 ERDPGYVDLAARRLRATTIDPE 286


>gi|197123344|ref|YP_002135295.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter sp. K]
 gi|196173193|gb|ACG74166.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter sp. K]
          Length = 286

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 103/262 (39%), Positives = 136/262 (51%), Gaps = 12/262 (4%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ +  LE+LP  SVD+ FADPPY L   G               SWD    F A  
Sbjct: 26  LVQGDCVEALERLPPHSVDVAFADPPYMLSNGG-STCQGGRRTSVNKGSWDASGGFAADH 84

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF   WL A R+VLKP+GTLWV G+ H IF IG  +Q L F +LN + W K N  PN   
Sbjct: 85  AFQARWLQAVRKVLKPSGTLWVSGTQHVIFSIGYAMQELGFHLLNTVTWYKPNASPNLAC 144

Query: 143 RRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDW----------LIPICSG 191
           R F ++ E L+WASP       + FNY A+K AN   QMR  W             + S 
Sbjct: 145 RFFTHSTEILLWASPMKARPLAHRFNYRAMKTANGGKQMRDLWEIADRPAPGGDQVVWSV 204

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                 +     HPTQKP ALL R+L +S  PGD++LDPF GS T+G  A +    F+G+
Sbjct: 205 PTPGPREKVHGRHPTQKPLALLERVLAASAAPGDLVLDPFSGSATTGVAALRAGCRFLGL 264

Query: 252 EMKQDYIDIATKRIASVQPLGN 273
           E    Y+D+A +R+ +      
Sbjct: 265 ERDPGYVDLAARRLRATTIDPE 286


>gi|331649063|ref|ZP_08350151.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
 gi|331042810|gb|EGI14952.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
          Length = 296

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 141/289 (48%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + + + +E ++      K   YTFN DA+             N        +      G
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 179

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 240 KFIGIELNSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288


>gi|330909313|gb|EGH37827.1| adenine-specific methyltransferase [Escherichia coli AA86]
          Length = 294

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 141/289 (48%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + + + +E ++      K   YTFN DA+             N        +      G
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 177

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIELNSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|117625553|ref|YP_858876.1| putative methyltransferase [Escherichia coli APEC O1]
 gi|161486097|ref|NP_755894.2| putative methyltransferase [Escherichia coli CFT073]
 gi|162138359|ref|YP_542679.2| putative methyltransferase [Escherichia coli UTI89]
 gi|218560331|ref|YP_002393244.1| methyltransferase [Escherichia coli S88]
 gi|218691553|ref|YP_002399765.1| putative methyltransferase [Escherichia coli ED1a]
 gi|227887988|ref|ZP_04005793.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 83972]
 gi|300991060|ref|ZP_07179481.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|301047882|ref|ZP_07194929.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|306816395|ref|ZP_07450527.1| putative methyltransferase [Escherichia coli NC101]
 gi|331659551|ref|ZP_08360493.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
 gi|115514677|gb|ABJ02752.1| putative adenine-specific methylase YhdJ [Escherichia coli APEC O1]
 gi|218367100|emb|CAR04873.1| methyltransferase [Escherichia coli S88]
 gi|218429117|emb|CAR09924.1| methyltransferase [Escherichia coli ED1a]
 gi|222034978|emb|CAP77721.1| Uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           LF82]
 gi|227835384|gb|EEJ45850.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 83972]
 gi|281180304|dbj|BAI56634.1| putative methyltransferase [Escherichia coli SE15]
 gi|294489786|gb|ADE88542.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           IHE3034]
 gi|300300225|gb|EFJ56610.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|300406981|gb|EFJ90519.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|305849960|gb|EFM50419.1| putative methyltransferase [Escherichia coli NC101]
 gi|307555356|gb|ADN48131.1| DNA methylase [Escherichia coli ABU 83972]
 gi|307625138|gb|ADN69442.1| putative methyltransferase [Escherichia coli UM146]
 gi|312947819|gb|ADR28646.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315294813|gb|EFU54156.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
 gi|323951218|gb|EGB47093.1| DNA methylase [Escherichia coli H252]
 gi|323957590|gb|EGB53304.1| DNA methylase [Escherichia coli H263]
 gi|324009091|gb|EGB78310.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
 gi|331054133|gb|EGI26162.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
          Length = 294

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 141/289 (48%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + + + +E ++      K   YTFN DA+             N        +      G
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 177

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|237705980|ref|ZP_04536461.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|26110282|gb|AAN82468.1|AE016767_228 Hypothetical adenine-specific methylase yhdJ [Escherichia coli
           CFT073]
 gi|91074267|gb|ABE09148.1| hypothetical adenine-specific methylase YhdJ [Escherichia coli
           UTI89]
 gi|226899020|gb|EEH85279.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 296

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 141/289 (48%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + + + +E ++      K   YTFN DA+             N        +      G
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 179

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288


>gi|167631056|ref|YP_001681555.1| DNA methylase [Heliobacterium modesticaldum Ice1]
 gi|167593796|gb|ABZ85544.1| DNA methylase [Heliobacterium modesticaldum Ice1]
          Length = 304

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 125/268 (46%), Gaps = 36/268 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I  G+++  + +LPA+SVDLIFADPPY   L         S         + + + E 
Sbjct: 45  DRIYCGDALVGMSRLPARSVDLIFADPPYF-GLKKDFGSGKRS---------NPWKTIEE 94

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +TRAW     R+LKP+G ++V   +    R+  ML +    +      R+       
Sbjct: 95  YMEWTRAWFAEAARLLKPHGAIYVCCDWEYSGRVQEMLSDSFDVLNRITWRREKGRG--- 151

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-----SDWLIPICSGSERL 195
             + ++N  E + +A     ++ Y FN + +K   E +                   ER 
Sbjct: 152 AAKNWKNNMEDIWFAV--VDSRQYIFNLEDVKFRKEIIAPYTTTDGKPKDWVETETGERF 209

Query: 196 R----------------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           R                +      HPTQKPE L+ R +++S+ PG ++LDPF GSGT+ A
Sbjct: 210 RMTCPPNIWTDLTVPFWSMPENTPHPTQKPEKLVERCILASSNPGALVLDPFMGSGTTAA 269

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           VA++L R FIG E  +DY+ +A KR+  
Sbjct: 270 VARRLGRHFIGFETNEDYVRLAMKRLDR 297


>gi|238913534|ref|ZP_04657371.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 287

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 33/286 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+     ++
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I   L+    + +   +    +      
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + F + +E ++    +PK+  YTFN DA+             +        +      G
Sbjct: 120 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA    R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
            FIGIE+  +Y+ +  +R++        EL  +  ++       + 
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKNTKTCPKSS 283


>gi|224585184|ref|YP_002638983.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469712|gb|ACN47542.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 294

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 33/280 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+     ++
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I   L+    + +   +    +      
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + F + +E ++    +PK+  YTFN DA+             +        +      G
Sbjct: 120 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA +  R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAESGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
            FIGIE+  +Y+ +  +R++        EL  +  ++T+ 
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQN 277


>gi|315289031|gb|EFU48429.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 110-3]
          Length = 294

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/289 (30%), Positives = 140/289 (48%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+ LPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKNLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + + + +E ++      K   YTFN DA+             N        +      G
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 177

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|288929718|ref|ZP_06423561.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288328819|gb|EFC67407.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 301

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 97/270 (35%), Positives = 141/270 (52%), Gaps = 8/270 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++GN I +L +      + IFADPPY L   G +      +V      WDK    +  +
Sbjct: 15  LLQGNCIELLGQF-DFKFNTIFADPPYFLSNGG-ISCQSGEVVSVNKGDWDKSHGADEDN 72

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL  CR  L  NGT+WV G+YHNIF +   L  L + ILN I W K+NP PN   
Sbjct: 73  LFNRRWLEVCRDKLADNGTIWVSGTYHNIFSVANCLAELGYKILNVITWAKTNPPPNISC 132

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ E +IWA  SPK   Y FNY  +K  N++ QM   W +P  +  E+   K    
Sbjct: 133 RYFTHSSEFVIWARKSPKVPHY-FNYQLMKEMNDNKQMTDVWHLPAIAPWEKTCTK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  LL+RI+++ST+P D +LDPF GS T+G  A    R + GIE +  +++I+ 
Sbjct: 188 -HPTQKPLGLLTRIILASTRPNDWVLDPFAGSSTTGIAANLFGRRYFGIEQEHHFLEISK 246

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
            R   ++      + +    +   ++    
Sbjct: 247 ARHMEIEQPDVATIYIDKILKQLRKLNNGY 276


>gi|62181894|ref|YP_218311.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129527|gb|AAX67230.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322716384|gb|EFZ07955.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 296

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 33/280 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+     ++
Sbjct: 18  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I   L+    + +   +    +      
Sbjct: 64  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + F + +E ++    +PK+  YTFN DA+             +        +      G
Sbjct: 122 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 179

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA +  R
Sbjct: 180 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAESGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
            FIGIE+  +Y+ +  +R++        EL  +  ++T+ 
Sbjct: 240 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQN 279


>gi|323178558|gb|EFZ64134.1| hypothetical protein ECOK1180_2289 [Escherichia coli 1180]
          Length = 283

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 33/279 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            FIGIE+  +YI +  +R+         EL  +  +R  
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKERPA 276


>gi|320194748|gb|EFW69378.1| Adenine-specific methyltransferase [Escherichia coli WV_060327]
          Length = 294

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/289 (30%), Positives = 138/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|218555826|ref|YP_002388739.1| putative methyltransferase [Escherichia coli IAI1]
 gi|218362594|emb|CAR00219.1| methyltransferase [Escherichia coli IAI1]
          Length = 294

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + + W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEDWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|110643506|ref|YP_671236.1| putative methyltransferase [Escherichia coli 536]
 gi|191173825|ref|ZP_03035346.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           F11]
 gi|300979712|ref|ZP_07174662.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|110345098|gb|ABG71335.1| hypothetical adenine-specific methylase YhdJ [Escherichia coli 536]
 gi|190905875|gb|EDV65493.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           F11]
 gi|300307930|gb|EFJ62450.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|315300926|gb|EFU60146.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 16-3]
 gi|324015871|gb|EGB85090.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 294

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 88/289 (30%), Positives = 138/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|198284865|ref|YP_002221186.1| DNA methylase N-4/N-6 domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665780|ref|YP_002427548.1| type III restriction-modification system, Mod subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249386|gb|ACH84979.1| DNA methylase N-4/N-6 domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517993|gb|ACK78579.1| type III restriction-modification system, Mod subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 751

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 152/407 (37%), Gaps = 75/407 (18%)

Query: 19  WKDKIIKGNSISVLEKLPAK----SV------DLIFADPPYNLQLNGQL----------Y 58
           W +K+I G++  +L  L +      +       LI+ DPP+++  +  +           
Sbjct: 92  WTNKLIWGDNKLILSSLKSGALRRQIEDAGGLKLIYIDPPFDVGADFSMDVEIGGETFHK 151

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
             +     A  D+W + +   ++ +     L+  R ++  +G+++V   +     +   L
Sbjct: 152 EANLLEQIAYRDTWGRGAD--SFISMIYERLILMRDLMAEDGSIYVHCDWRLASLVRIAL 209

Query: 119 QNLN--------FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK-------- 162
             +             N+I+W  S        + +   H T+++ S +            
Sbjct: 210 DEVFGKGGDNEAPGFRNEIIWYFSQGGKGV--KHWARKHNTILYYSKTDSPIFNQDAVRL 267

Query: 163 GYTFNYDALKAANEDVQMRSD-----WLIPICSGSERLRNK------------------- 198
            +T +    K  N   +M  D     ++    +G ++L                      
Sbjct: 268 PFTPHKQDEKGENYGGRMGVDEDGRRYVEKWGTGKKKLYRYYLDEGKLPEDVWTDIQSIQ 327

Query: 199 ---DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   +PTQKPEALL RI+ +S+K GD++ D F GSGT+ AVA+KL R +I  ++ +
Sbjct: 328 SAATERMDYPTQKPEALLERIIKASSKEGDLVADFFVGSGTTAAVAEKLGRKWIATDLGK 387

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
             I    KR+  VQ     +       R    +       +  +  G  L+  Q   + T
Sbjct: 388 FGIHTTRKRLIGVQ---REKKAAEQDFRAFEVLNLGRYERQAYLNVGGRLSGEQKAQALT 444

Query: 316 VCADGTLISGTELGSIHRVGAKVSGSETCNGWN-FWYFEKLGELHSI 361
              +        +   ++   +  G+E     + F++  + G L  I
Sbjct: 445 QKEN---EFRDLILRAYK-ATEFGGTEGTQAQDGFFHGARNGRLVVI 487


>gi|325299176|ref|YP_004259093.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324318729|gb|ADY36620.1| DNA methylase N-4/N-6 domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 293

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 97/265 (36%), Positives = 139/265 (52%), Gaps = 8/265 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+ I +L        D+IFADPPY+L   G +      +V      WD+   +E  
Sbjct: 14  TLLKGDCIELLHSF-DFKFDMIFADPPYHLSNGG-ISVQSGKMVSVNKGDWDRSKGYEED 71

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R+W+ ACR  LK NGT+W+ G+YHNIF +   L  L F ILN I W K+NP PN  
Sbjct: 72  YLFDRSWIEACRNKLKSNGTIWISGTYHNIFSVARCLTELGFKILNCITWEKTNPPPNLS 131

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            + F ++ E ++WA    K   Y FNY+ +K  N   QMR  W +P     E+   K   
Sbjct: 132 CKYFTHSAEYILWARKEQKVPHY-FNYELMKKINGGTQMRDVWRLPAIVRWEKSCGK--- 187

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  +LSRI+ +ST P   ILDPF GS T+G  A  L R F+GI+  ++++ ++
Sbjct: 188 --HPTQKPLCVLSRIIQASTLPSAWILDPFTGSSTTGIAANLLGRRFLGIDQNEEFLKMS 245

Query: 262 TKRIASVQPLGNIELTVLTGKRTEP 286
             R   +       L +   ++   
Sbjct: 246 KARREEINDTSKRTLYLEKLQKQAQ 270


>gi|325498841|gb|EGC96700.1| methyltransferase [Escherichia fergusonii ECD227]
          Length = 294

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 90/295 (30%), Positives = 139/295 (47%), Gaps = 34/295 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+++S L+KLP++SVDLIFADPPYN+  N           D + +SWD       +
Sbjct: 18  RIIHGDALSELKKLPSESVDLIFADPPYNIGKN----------FDGLVESWDD----ADF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            ++    +  C RVLK  G+++++ S  N+  I   L+    + +   +    +      
Sbjct: 64  RSWLFEIIAECHRVLKKQGSMYIMNSTENMPWID--LECRKLFTIKSRIIWAYDSSGVQA 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + F + +E ++      K   YTFN DA                  N      S  +  
Sbjct: 122 KKYFGSMYEPILMMVKDAK--NYTFNSDAILVEAKTGAKRALIDYRKNPPQPYNSQKVPG 179

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKP ALL RI+++S+ PGDI+LDPF GS T+G VA +  R
Sbjct: 180 NVWEFSRVRYLMDEYENHPTQKPVALLKRIILASSCPGDIVLDPFAGSFTTGKVAVETGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
            FIGIE+  +Y+ +  +R+         EL  +  KR     +      RG + P
Sbjct: 240 RFIGIEVNCEYVKMGLRRLNVDSHFSAEELAKVK-KRKTRNQSKKSQNSRGSLLP 293


>gi|16762145|ref|NP_457762.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16766681|ref|NP_462296.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29143634|ref|NP_806976.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|161616411|ref|YP_001590376.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167552904|ref|ZP_02346655.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167993974|ref|ZP_02575067.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168233973|ref|ZP_02659031.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168239415|ref|ZP_02664473.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168245210|ref|ZP_02670142.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168463376|ref|ZP_02697293.1| DNA methylase [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168822713|ref|ZP_02834713.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194442303|ref|YP_002042642.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449918|ref|YP_002047414.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194469895|ref|ZP_03075879.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194736425|ref|YP_002116334.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197251530|ref|YP_002148310.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197265136|ref|ZP_03165210.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|198244548|ref|YP_002217356.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200389115|ref|ZP_03215727.1| DNA methylase [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204931162|ref|ZP_03221956.1| DNA methylase [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|207858634|ref|YP_002245285.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213162245|ref|ZP_03347955.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213428297|ref|ZP_03361047.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213649888|ref|ZP_03379941.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213853025|ref|ZP_03382557.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289824094|ref|ZP_06543691.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25286118|pir||AG0913 probable adenine-specific DNA-modification methylase STY3566
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16421947|gb|AAL22255.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16504448|emb|CAD07901.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139269|gb|AAO70836.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|161365775|gb|ABX69543.1| hypothetical protein SPAB_04220 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194400966|gb|ACF61188.1| DNA methylase [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194408222|gb|ACF68441.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456259|gb|EDX45098.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194711927|gb|ACF91148.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195633408|gb|EDX51822.1| DNA methylase [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197215233|gb|ACH52630.1| DNA methylase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197243391|gb|EDY26011.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197287877|gb|EDY27265.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197939064|gb|ACH76397.1| DNA methylase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199606213|gb|EDZ04758.1| DNA methylase [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204319929|gb|EDZ05135.1| DNA methylase [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205322540|gb|EDZ10379.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205328111|gb|EDZ14875.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205332006|gb|EDZ18770.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205336037|gb|EDZ22801.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205340921|gb|EDZ27685.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206710437|emb|CAR34795.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261248549|emb|CBG26387.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267995595|gb|ACY90480.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159935|emb|CBW19454.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914414|dbj|BAJ38388.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320087834|emb|CBY97598.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225192|gb|EFX50251.1| Adenine-specific methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322614527|gb|EFY11457.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618251|gb|EFY15142.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625964|gb|EFY22778.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626734|gb|EFY23531.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631302|gb|EFY28062.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635431|gb|EFY32145.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643431|gb|EFY39995.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647265|gb|EFY43763.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649729|gb|EFY46156.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655597|gb|EFY51903.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658373|gb|EFY54638.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664403|gb|EFY60599.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667377|gb|EFY63539.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674625|gb|EFY70717.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675744|gb|EFY71817.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682380|gb|EFY78403.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684755|gb|EFY80756.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131748|gb|ADX19178.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323196167|gb|EFZ81327.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196733|gb|EFZ81878.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204370|gb|EFZ89379.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207718|gb|EFZ92665.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209992|gb|EFZ94897.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214293|gb|EFZ99046.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219030|gb|EGA03536.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225048|gb|EGA09301.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230400|gb|EGA14519.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233376|gb|EGA17470.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239413|gb|EGA23463.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242336|gb|EGA26362.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247310|gb|EGA31275.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250400|gb|EGA34284.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256848|gb|EGA40563.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263868|gb|EGA47387.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264111|gb|EGA47619.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271630|gb|EGA55049.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326625135|gb|EGE31480.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332990244|gb|AEF09227.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 294

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 143/280 (51%), Gaps = 33/280 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+     ++
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I   L+    + +   +    +      
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + F + +E ++    +PK+  YTFN DA+             +        +      G
Sbjct: 120 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA    R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
            FIGIE+  +Y+ +  +R++        EL  +  ++T+ 
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQN 277


>gi|331643962|ref|ZP_08345093.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
 gi|606203|gb|AAA58066.1| ORF_o296 [Escherichia coli str. K-12 substr. MG1655]
 gi|331037433|gb|EGI09657.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
          Length = 296

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288


>gi|89110022|ref|AP_003802.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111566|ref|NP_417728.4| DNA adenine methyltransferase, SAM-dependent [Escherichia coli str.
           K-12 substr. MG1655]
 gi|170082790|ref|YP_001732110.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|238902361|ref|YP_002928157.1| putative methyltransferase [Escherichia coli BW2952]
 gi|256024164|ref|ZP_05438029.1| putative methyltransferase [Escherichia sp. 4_1_40B]
 gi|300948348|ref|ZP_07162456.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
 gi|301028293|ref|ZP_07191553.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|301647038|ref|ZP_07246870.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|307139950|ref|ZP_07499306.1| putative methyltransferase [Escherichia coli H736]
 gi|3915983|sp|P28638|YHDJ_ECOLI RecName: Full=DNA adenine methyltransferase YhdJ
 gi|85676053|dbj|BAE77303.1| predicted methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082238|gb|AAC76294.2| DNA adenine methyltransferase, SAM-dependent [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169890625|gb|ACB04332.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238862670|gb|ACR64668.1| predicted methyltransferase [Escherichia coli BW2952]
 gi|260447711|gb|ACX38133.1| DNA methylase N-4/N-6 domain protein [Escherichia coli DH1]
 gi|299878636|gb|EFI86847.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|300452137|gb|EFK15757.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
 gi|301074788|gb|EFK89594.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|309703681|emb|CBJ03022.1| putative DNA methylase [Escherichia coli ETEC H10407]
 gi|315137845|dbj|BAJ45004.1| putative methyltransferase [Escherichia coli DH1]
 gi|315617071|gb|EFU97681.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           3431]
 gi|323936255|gb|EGB32547.1| DNA methylase [Escherichia coli E1520]
          Length = 294

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|157162743|ref|YP_001460061.1| putative methyltransferase [Escherichia coli HS]
 gi|157068423|gb|ABV07678.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli HS]
          Length = 294

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 134/281 (47%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|293449585|ref|ZP_06664006.1| adenine-specific DNA-methyltransferase [Escherichia coli B088]
 gi|291322675|gb|EFE62104.1| adenine-specific DNA-methyltransferase [Escherichia coli B088]
          Length = 296

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288


>gi|331679335|ref|ZP_08380007.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
 gi|332279906|ref|ZP_08392319.1| conserved hypothetical protein [Shigella sp. D9]
 gi|331073400|gb|EGI44723.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
 gi|332102258|gb|EGJ05604.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 296

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288


>gi|73857268|gb|AAZ89975.1| putative methyltransferase [Shigella sonnei Ss046]
          Length = 296

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    ++ C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 64  IDWLFEVIVECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288


>gi|191169151|ref|ZP_03030909.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           B7A]
 gi|209920734|ref|YP_002294818.1| putative methyltransferase [Escherichia coli SE11]
 gi|256018824|ref|ZP_05432689.1| putative methyltransferase [Shigella sp. D9]
 gi|260846067|ref|YP_003223845.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260857389|ref|YP_003231280.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|260870013|ref|YP_003236415.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|300824974|ref|ZP_07105073.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|307314981|ref|ZP_07594569.1| DNA methylase N-4/N-6 domain protein [Escherichia coli W]
 gi|309793841|ref|ZP_07688267.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|331670086|ref|ZP_08370931.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
 gi|190900793|gb|EDV60584.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           B7A]
 gi|209913993|dbj|BAG79067.1| putative methyltransferase [Escherichia coli SE11]
 gi|257756038|dbj|BAI27540.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|257761214|dbj|BAI32711.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|257766369|dbj|BAI37864.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|300522540|gb|EFK43609.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|306905564|gb|EFN36096.1| DNA methylase N-4/N-6 domain protein [Escherichia coli W]
 gi|308122798|gb|EFO60060.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|315062561|gb|ADT76888.1| predicted methyltransferase [Escherichia coli W]
 gi|320181533|gb|EFW56451.1| Adenine-specific methyltransferase [Shigella boydii ATCC 9905]
 gi|323154481|gb|EFZ40682.1| hypothetical protein ECEPECA14_3785 [Escherichia coli EPECa14]
 gi|323183021|gb|EFZ68420.1| hypothetical protein ECOK1357_3629 [Escherichia coli 1357]
 gi|323376852|gb|ADX49120.1| DNA methylase N-4/N-6 domain protein [Escherichia coli KO11]
 gi|324020744|gb|EGB89963.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
 gi|324119442|gb|EGC13325.1| DNA methylase [Escherichia coli E1167]
 gi|331062999|gb|EGI34913.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
          Length = 294

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|170018495|ref|YP_001723449.1| putative methyltransferase [Escherichia coli ATCC 8739]
 gi|188492784|ref|ZP_03000054.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           53638]
 gi|194440031|ref|ZP_03072088.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           101-1]
 gi|253771908|ref|YP_003034739.1| methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163197|ref|YP_003046305.1| putative methyltransferase [Escherichia coli B str. REL606]
 gi|300904456|ref|ZP_07122302.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300928703|ref|ZP_07144221.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
 gi|301304271|ref|ZP_07210385.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|312972469|ref|ZP_07786643.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           1827-70]
 gi|169753423|gb|ACA76122.1| DNA methylase N-4/N-6 domain protein [Escherichia coli ATCC 8739]
 gi|188487983|gb|EDU63086.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           53638]
 gi|194421035|gb|EDX37065.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           101-1]
 gi|242378796|emb|CAQ33588.1| DNA adenine methyltransferase [Escherichia coli BL21(DE3)]
 gi|253322952|gb|ACT27554.1| DNA methylase N-4/N-6 domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975098|gb|ACT40769.1| predicted methyltransferase [Escherichia coli B str. REL606]
 gi|253979254|gb|ACT44924.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|300403618|gb|EFJ87156.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300463292|gb|EFK26785.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
 gi|300840397|gb|EFK68157.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|310334846|gb|EFQ01051.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           1827-70]
 gi|315257188|gb|EFU37156.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
 gi|323941645|gb|EGB37824.1| DNA methylase [Escherichia coli E482]
 gi|323961090|gb|EGB56704.1| DNA methylase [Escherichia coli H489]
 gi|323970323|gb|EGB65593.1| DNA methylase [Escherichia coli TA007]
 gi|332345217|gb|AEE58551.1| adenine-specific methylase YhdJ [Escherichia coli UMNK88]
          Length = 294

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 134/281 (47%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|161986434|ref|YP_312210.2| putative methyltransferase [Shigella sonnei Ss046]
 gi|323165223|gb|EFZ51013.1| hypothetical protein SS53G_4688 [Shigella sonnei 53G]
          Length = 294

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    ++ C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIVECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|38704155|ref|NP_312161.2| methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|161367510|ref|NP_289830.2| putative methyltransferase [Escherichia coli O157:H7 EDL933]
 gi|168752562|ref|ZP_02777584.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|168764877|ref|ZP_02789884.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769125|ref|ZP_02794132.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777678|ref|ZP_02802685.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4196]
 gi|168783831|ref|ZP_02808838.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786155|ref|ZP_02811162.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC869]
 gi|168802604|ref|ZP_02827611.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC508]
 gi|195940006|ref|ZP_03085388.1| putative methyltransferase [Escherichia coli O157:H7 str. EC4024]
 gi|208807568|ref|ZP_03249905.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812864|ref|ZP_03254193.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819259|ref|ZP_03259579.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400072|ref|YP_002272724.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327970|ref|ZP_03444053.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|254795205|ref|YP_003080042.1| putative methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|261228267|ref|ZP_05942548.1| predicted methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255123|ref|ZP_05947656.1| predicted methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|291284629|ref|YP_003501447.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|187767137|gb|EDU30981.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4196]
 gi|188013624|gb|EDU51746.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|188998858|gb|EDU67844.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|189361843|gb|EDU80262.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365192|gb|EDU83608.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373855|gb|EDU92271.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC869]
 gi|189375426|gb|EDU93842.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC508]
 gi|208727369|gb|EDZ76970.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734141|gb|EDZ82828.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739382|gb|EDZ87064.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161472|gb|ACI38905.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|217320337|gb|EEC28762.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594605|gb|ACT73966.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|290764502|gb|ADD58463.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|320189609|gb|EFW64268.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320645624|gb|EFX14633.1| putative methyltransferase [Escherichia coli O157:H- str. 493-89]
 gi|320650934|gb|EFX19391.1| putative methyltransferase [Escherichia coli O157:H- str. H 2687]
 gi|320656315|gb|EFX24227.1| putative methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662005|gb|EFX29413.1| putative methyltransferase [Escherichia coli O55:H7 str. USDA 5905]
 gi|326337957|gb|EGD61791.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           1125]
 gi|326347526|gb|EGD71251.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           1044]
          Length = 294

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|12517892|gb|AAG58390.1|AE005554_1 putative methyltransferase [Escherichia coli O157:H7 str. EDL933]
 gi|13363607|dbj|BAB37557.1| putative methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|209757518|gb|ACI77071.1| putative methyltransferase [Escherichia coli]
 gi|209757520|gb|ACI77072.1| putative methyltransferase [Escherichia coli]
 gi|209757522|gb|ACI77073.1| putative methyltransferase [Escherichia coli]
 gi|209757526|gb|ACI77075.1| putative methyltransferase [Escherichia coli]
          Length = 296

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 64  IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288


>gi|323966440|gb|EGB61874.1| DNA methylase [Escherichia coli M863]
 gi|327251356|gb|EGE63045.1| hypothetical protein ECSTEC7V_3896 [Escherichia coli STEC_7v]
          Length = 294

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVTSHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|193071526|ref|ZP_03052436.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E110019]
 gi|192955163|gb|EDV85656.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E110019]
          Length = 294

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 134/281 (47%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|218702035|ref|YP_002409664.1| putative methyltransferase [Escherichia coli IAI39]
 gi|300937389|ref|ZP_07152224.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|218372021|emb|CAR19877.1| methyltransferase [Escherichia coli IAI39]
 gi|300457563|gb|EFK21056.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|323189126|gb|EFZ74410.1| hypothetical protein ECRN5871_2725 [Escherichia coli RN587/1]
 gi|323979019|gb|EGB74097.1| DNA methylase [Escherichia coli TW10509]
          Length = 294

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|331674779|ref|ZP_08375538.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
 gi|331068218|gb|EGI39614.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
          Length = 296

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAAASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288


>gi|218696961|ref|YP_002404628.1| putative methyltransferase [Escherichia coli 55989]
 gi|218353693|emb|CAU99950.1| methyltransferase [Escherichia coli 55989]
 gi|320202171|gb|EFW76746.1| Adenine-specific methyltransferase [Escherichia coli EC4100B]
          Length = 294

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|187732784|ref|YP_001881954.1| putative methyltransferase [Shigella boydii CDC 3083-94]
 gi|187429776|gb|ACD09050.1| DNA methylase, N4/N6-methyltransferase family [Shigella boydii CDC
           3083-94]
 gi|320177101|gb|EFW52117.1| Adenine-specific methyltransferase [Shigella dysenteriae CDC
           74-1112]
 gi|320184070|gb|EFW58890.1| Adenine-specific methyltransferase [Shigella flexneri CDC 796-83]
          Length = 294

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + ++ ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYDPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|331684902|ref|ZP_08385494.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
 gi|331078517|gb|EGI49723.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
          Length = 294

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|300925993|ref|ZP_07141816.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|301326296|ref|ZP_07219669.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|300417937|gb|EFK01248.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|300846997|gb|EFK74757.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
          Length = 294

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 134/281 (47%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|332098818|gb|EGJ03775.1| hypothetical protein SB359474_0136 [Shigella boydii 3594-74]
          Length = 283

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 33/279 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + ++ ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYDPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDIILDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIILDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            FIGIE+  +YI +  +R+         EL  +  +R  
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKERPA 276


>gi|293416687|ref|ZP_06659326.1| adenine-specific DNA-methyltransferase [Escherichia coli B185]
 gi|331654860|ref|ZP_08355860.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
 gi|291432043|gb|EFF05026.1| adenine-specific DNA-methyltransferase [Escherichia coli B185]
 gi|331048242|gb|EGI20319.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
          Length = 296

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 64  IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288


>gi|215488569|ref|YP_002331000.1| putative methyltransferase [Escherichia coli O127:H6 str. E2348/69]
 gi|312968407|ref|ZP_07782616.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           2362-75]
 gi|215266641|emb|CAS11080.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312286625|gb|EFR14536.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           2362-75]
          Length = 294

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|168262589|ref|ZP_02684562.1| DNA methylase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205348404|gb|EDZ35035.1| DNA methylase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 294

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 143/280 (51%), Gaps = 33/280 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+     ++
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----TSF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I   L+    + +   +    +      
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + F + +E ++    +PK+  YTFN DA+             +        +      G
Sbjct: 120 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA    R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
            FIGIE+  +Y+ +  +R++        EL  +  ++T+ 
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQN 277


>gi|300958256|ref|ZP_07170403.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
 gi|300315074|gb|EFJ64858.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
          Length = 294

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRMRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|324115134|gb|EGC09098.1| DNA methylase [Escherichia fergusonii B253]
          Length = 292

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 90/295 (30%), Positives = 139/295 (47%), Gaps = 34/295 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+++S L+KLP++SVDLIFADPPYN+  N           D + +SWD       +
Sbjct: 16  RIIHGDALSELKKLPSESVDLIFADPPYNIGKN----------FDGLVESWDD----ADF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            ++    +  C RVLK  G+++++ S  N+  I   L+    + +   +    +      
Sbjct: 62  RSWLFEIIAECHRVLKKQGSMYIMNSTENMPWID--LECRKLFTIKSRIIWAYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + F + +E ++      K   YTFN DA                  N      S  +  
Sbjct: 120 KKYFGSMYEPILMMVKDAK--NYTFNSDAILVEAKTGAKRALIDYRKNPPQPYNSQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKP ALL RI+++S+ PGDI+LDPF GS T+G VA +  R
Sbjct: 178 NVWEFSRVRYLMDEYENHPTQKPVALLKRIILASSCPGDIVLDPFAGSFTTGEVAVETGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
            FIGIE+  +Y+ +  +R+         EL  +  KR     +      RG + P
Sbjct: 238 RFIGIEVNCEYVKMGLRRLNVDSHFSAEELAKVK-KRKTRNQSKKSQNSRGSLLP 291


>gi|332087253|gb|EGI92386.1| hypothetical protein SB521682_3384 [Shigella boydii 5216-82]
          Length = 294

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE   +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIESNSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|313202777|ref|YP_004041434.1| DNA methylase N-4/N-6 domain protein [Paludibacter propionicigenes
           WB4]
 gi|312442093|gb|ADQ78449.1| DNA methylase N-4/N-6 domain protein [Paludibacter propionicigenes
           WB4]
          Length = 235

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 115/249 (46%), Gaps = 17/249 (6%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I   + +  L++LP + VDLIF DPPY       +    +         +D F S +
Sbjct: 3   LNIIYNQSCLDGLKQLPDECVDLIFTDPPYYQHRAQNVQGLKNHKDVVTEFDFDGFKSED 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP- 138
            Y  F    L+ C RV KP  + ++      +  I  M++   F     I W K+NP P 
Sbjct: 63  EYLQFLEDVLMECFRVCKPGASGYLWCGDDFVSFINRMVERTGFQFRKVIHWHKTNPFPA 122

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
            +  + + N+ E L+  S        T+N+  +        M +    PIC G ER +  
Sbjct: 123 MYTRKMYANSMELLVHFSK---GSPKTWNHKPVN------DMHNFIQAPICMGKERTK-- 171

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                H TQKP  +    +  S+  GD++LDPF GSG++   AKKL+R+FIG E+  +Y 
Sbjct: 172 -----HKTQKPLKVCMPFIEISSNEGDLVLDPFMGSGSTAVAAKKLKRNFIGYELSTEYC 226

Query: 259 DIATKRIAS 267
           +IA  R+  
Sbjct: 227 NIANSRLEK 235


>gi|56962596|ref|YP_174322.1| adenine-specific DNA methylase [Bacillus clausii KSM-K16]
 gi|56908834|dbj|BAD63361.1| adenine-specific DNA methylase [Bacillus clausii KSM-K16]
          Length = 403

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 111/287 (38%), Gaps = 30/287 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+ +  L+K+P +SVDLI+ DPP+  Q   +L   D+       DSW    S + Y 
Sbjct: 3   IFLGDCLEQLKKIPDESVDLIYLDPPFYTQKTQKLKTRDNQKEYYFEDSW---ESIQEYF 59

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F +  L  C RVLK  G++++         +   L  +            +    +   
Sbjct: 60  NFIKVRLEECHRVLKKTGSIFLHCDKSASHYLRVALDEVFGMDKFQSEIIWAYKRWSNSK 119

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------- 177
               N H+T+ + S + K K      D     N D                         
Sbjct: 120 VGLLNNHQTIYFYSKTKKFKFNKIYTDYSATTNIDQILQERVRDENAKSVYKVDENGKPI 179

Query: 178 --VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
              + +   L  + +             +PTQKP  L+ +IL   T  GD +LDPF GSG
Sbjct: 180 IGKEKKGVPLSDVWNIPFLNPKAKERTGYPTQKPILLIEQILKLVTDEGDKVLDPFCGSG 239

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           T+   A  + R +IGI++ +D I +  +R+ +     +  L     +
Sbjct: 240 TTLVTANIMNRKYIGIDISEDAIQLTKQRLENPIKTSSHLLNKGEKE 286


>gi|293412630|ref|ZP_06655353.1| adenine-specific methylase yhdJ [Escherichia coli B354]
 gi|291469401|gb|EFF11892.1| adenine-specific methylase yhdJ [Escherichia coli B354]
          Length = 296

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 136/281 (48%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 280


>gi|218706876|ref|YP_002414395.1| putative methyltransferase [Escherichia coli UMN026]
 gi|293406864|ref|ZP_06650790.1| methyltransferase [Escherichia coli FVEC1412]
 gi|298382605|ref|ZP_06992202.1| adenine-specific DNA-methyltransferase [Escherichia coli FVEC1302]
 gi|300898034|ref|ZP_07116405.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
 gi|218433973|emb|CAR14890.1| methyltransferase [Escherichia coli UMN026]
 gi|291426870|gb|EFE99902.1| methyltransferase [Escherichia coli FVEC1412]
 gi|298277745|gb|EFI19261.1| adenine-specific DNA-methyltransferase [Escherichia coli FVEC1302]
 gi|300358253|gb|EFJ74123.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
          Length = 294

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 88/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI++ S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILGSSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|331664871|ref|ZP_08365776.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
 gi|284923276|emb|CBG36370.1| putative DNA methylase [Escherichia coli 042]
 gi|331058119|gb|EGI30101.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
          Length = 285

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 136/281 (48%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVTSHYSAEELAKVKKRKTGNR 278


>gi|323162947|gb|EFZ48782.1| hypothetical protein ECE128010_0909 [Escherichia coli E128010]
          Length = 294

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPE LL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEVLLKRIILASSNPGDIVLDPFAGSFTTGAVAVSCGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|161984845|ref|YP_409580.2| methyltransferase [Shigella boydii Sb227]
          Length = 294

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + ++ ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYDPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDIILDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIILDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|81247044|gb|ABB67752.1| putative methyltransferase [Shigella boydii Sb227]
          Length = 296

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + ++ ++      K   YTFN DA                  N         +  
Sbjct: 122 KKHYGSMYDPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDIILDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIILDPFAGSFTTGAVAVSSGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288


>gi|218550546|ref|YP_002384337.1| methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218358087|emb|CAQ90733.1| methyltransferase [Escherichia fergusonii ATCC 35469]
          Length = 299

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 90/295 (30%), Positives = 139/295 (47%), Gaps = 34/295 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+++S L+KLP++SVDLIFADPPYN+  N           D + +SWD       +
Sbjct: 23  RIIHGDALSELKKLPSESVDLIFADPPYNIGKN----------FDGLVESWDD----ADF 68

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            ++    +  C RVLK  G+++++ S  N+  I   L+    + +   +    +      
Sbjct: 69  RSWLFEIIAECHRVLKKQGSMYIMNSTENMPWID--LECRKLFTIKSRIIWAYDSSGVQA 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + F + +E ++      K   YTFN DA                  N      S  +  
Sbjct: 127 KKYFGSMYEPILMMVKDAK--NYTFNSDAILVEAKTGAKRALIDYRKNPPQPYNSQKVPG 184

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKP ALL RI+++S+ PGDI+LDPF GS T+G VA +  R
Sbjct: 185 NVWEFSRVRYLMDEYENHPTQKPVALLKRIILASSCPGDIVLDPFAGSFTTGEVAVETGR 244

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
            FIGIE+  +Y+ +  +R+         EL  +  KR     +      RG + P
Sbjct: 245 RFIGIEVNCEYVKMGLRRLNVDSHFSAEELAKVK-KRKTRNQSKKSQNSRGSLLP 298


>gi|308177941|ref|YP_003917347.1| site-specific DNA-methyltransferase [Arthrobacter arilaitensis
           Re117]
 gi|307745404|emb|CBT76376.1| site-specific DNA-methyltransferase [Arthrobacter arilaitensis
           Re117]
          Length = 308

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 26/269 (9%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK------ 74
           + +  G+++S+L  LP +S  LI+ DPP+N        R   ++V A     D+      
Sbjct: 28  NTVYHGDNLSILGSLPDQSFTLIYVDPPFNTGRK--QTRAQRTMVRAAEGEGDRTGFKGR 85

Query: 75  ------------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                         +F+ Y +F    L    R+L  +GTL+V   Y  +  +  +L  + 
Sbjct: 86  EYNTELGIARSYHDTFDDYLSFIEPRLREAHRLLAEDGTLYVHLDYREVHYVKVLLDQIF 145

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANE 176
                      +         R+   H+T++     PK   +         Y A      
Sbjct: 146 GRDCFLNELIWAYDYGARAKSRWPAKHDTILVYVKDPKQYHFDSAEVDREPYMAPGLVTP 205

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           + +        +   +        +  +PTQKPE +L RI+ +S++PGD++LD F GSGT
Sbjct: 206 EKRALGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGVLRRIVAASSRPGDLVLDFFAGSGT 265

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +GAVA KL R F+ I+   + I++   R+
Sbjct: 266 TGAVAAKLGRQFVLIDQNPEAIEVMKARL 294


>gi|257461260|ref|ZP_05626357.1| DNA methylase [Campylobacter gracilis RM3268]
 gi|257441288|gb|EEV16434.1| DNA methylase [Campylobacter gracilis RM3268]
          Length = 271

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 136/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ KG+  ++L K   +  DLIFADPPY L  +G L   +  +V      WDK    +  
Sbjct: 9   KLFKGDCFNILPKFKGE-FDLIFADPPYFLSNDG-LSIQNGQIVSVNKGEWDKSYGIDEI 66

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   WL   +  L  NG++ + G+YHNIF IG  LQ L++ ILN I W K+NP PNF 
Sbjct: 67  DKFNLEWLALAKDALANNGSVMISGTYHNIFSIGRALQKLDYKILNVITWAKTNPPPNFS 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   +  E +IWA  S K   + FNY+ +K  N + QMR  W +P  +  E+   K   
Sbjct: 127 CRYLTHGSEQIIWARKSEK-FKHIFNYELMKKLNGNKQMRDVWSLPAIAPWEKACGK--- 182

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  LL R+++ ++    ++ DPF GS T+G  A  L R F+GIE + ++IDIA
Sbjct: 183 --HPTQKPLPLLVRLILMASTQNSVVCDPFAGSATTGVAANLLGRKFVGIEKEDEFIDIA 240

Query: 262 TKR 264
            KR
Sbjct: 241 VKR 243


>gi|194430238|ref|ZP_03062735.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           B171]
 gi|194411709|gb|EDX28034.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           B171]
          Length = 294

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPE LL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEVLLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|163845918|ref|YP_001633962.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222523640|ref|YP_002568110.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163667207|gb|ABY33573.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447519|gb|ACM51785.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 400

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 120/286 (41%), Gaps = 30/286 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++ G+   VL+ +   S+DL++ DPP+  Q    L   D +   +  D+W    S E Y
Sbjct: 2   TVLCGDCRIVLQSINDSSIDLVYMDPPFFTQKTHALVNRDGNASYSFEDTW---ESIETY 58

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            AF R  L+ C+RVLK  G+++V         +  +L  +            +    +  
Sbjct: 59  LAFMREVLIQCKRVLKDTGSIFVHCDRSASHHLRVLLDQIFGPEHFQSEIIWTYRRWSNS 118

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS-------------DWLIPI 188
            +    AH+T+ + S +   K      D     N D  +++             D    I
Sbjct: 119 KKGLLPAHQTIYFYSKTENFKFNVLFTDYSPTTNIDQILQARARNEKGKSVYRRDQHGNI 178

Query: 189 CSGSERL--------------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            +G E+                       +PTQKP  LL RI+  +T  GD +LDPF GS
Sbjct: 179 VAGKEKKGVPLSDVWYIPFLNPKAKERVGYPTQKPVLLLERIIKIATDSGDSVLDPFCGS 238

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           GT+   AK L R++IGI++ ++ + ++ +R+       +  L V  
Sbjct: 239 GTTLVAAKLLGRTYIGIDISREAVSLSEERLRQPIKSESQLLVVGE 284


>gi|193066458|ref|ZP_03047503.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E22]
 gi|192925887|gb|EDV80536.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E22]
          Length = 294

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSTPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|170680849|ref|YP_001745533.1| putative methyltransferase [Escherichia coli SMS-3-5]
 gi|170518567|gb|ACB16745.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           SMS-3-5]
          Length = 294

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKIPADSVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|329914377|ref|ZP_08276110.1| putative DNA-methyltransferase (DNA-modification methylase)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327545139|gb|EGF30424.1| putative DNA-methyltransferase (DNA-modification methylase)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 258

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 71/267 (26%), Positives = 130/267 (48%), Gaps = 33/267 (12%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + +W++++   ++++ L ++P   +DLI ADPPY L  +               +  DK 
Sbjct: 1   MADWQNQVFCEDALAGLARIPDGVIDLILADPPYGLGKDYG-------------NDSDKL 47

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           ++   Y A+   W+ A    LKPNG+L++  ++     I  +L+     ++N+IVW +  
Sbjct: 48  AT-AEYLAWMERWIDAALPKLKPNGSLYIFLTWRYSPEIFVLLKQRMT-MVNEIVWDRRV 105

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--------------VQMR 181
           P      R++ + H+T+ + +    +K Y F+ DA++   +                 + 
Sbjct: 106 PSMGGTVRKYSSVHDTIGFFA---NSKDYYFDLDAIRIPYDAVTKKARSRSIFVGAKWLE 162

Query: 182 SDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
             +         RL  +  E+  HPTQKP  ++ R++ +S  PG I+LDPF GSGT+   
Sbjct: 163 LGYNPKDVWSVSRLHREHRERADHPTQKPLEIIERMVKASCPPGGIVLDPFMGSGTTAVA 222

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
           AK+  R F+G E+  DY  +  +R+A 
Sbjct: 223 AKRAGRQFVGFELNADYCAMIAQRLAQ 249


>gi|160884890|ref|ZP_02065893.1| hypothetical protein BACOVA_02880 [Bacteroides ovatus ATCC 8483]
 gi|237716944|ref|ZP_04547425.1| type II restriction enzyme M protein [Bacteroides sp. D1]
 gi|262405713|ref|ZP_06082263.1| DNA methylase [Bacteroides sp. 2_1_22]
 gi|294643396|ref|ZP_06721215.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294810621|ref|ZP_06769271.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|156109925|gb|EDO11670.1| hypothetical protein BACOVA_02880 [Bacteroides ovatus ATCC 8483]
 gi|229442927|gb|EEO48718.1| type II restriction enzyme M protein [Bacteroides sp. D1]
 gi|262356588|gb|EEZ05678.1| DNA methylase [Bacteroides sp. 2_1_22]
 gi|292641274|gb|EFF59473.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294442163|gb|EFG10980.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|295085863|emb|CBK67386.1| DNA modification methylase [Bacteroides xylanisolvens XB1A]
          Length = 279

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 95/243 (39%), Positives = 136/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++ G+   +L +      D+IFADPPY L   G +      +V      WD+    E+ 
Sbjct: 15  TLLLGDCRQLLSQF-DFQFDMIFADPPYFLSNGG-ISVQSGKIVCVDKGDWDRSFGKESI 72

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+  CR  LK NGT+W+ G+YHNIF +   L  L F ILN I W K+NP PN  
Sbjct: 73  DNFNYKWIADCRDKLKDNGTIWISGTYHNIFSVANQLTELGFKILNCITWVKTNPPPNIS 132

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F  + E +IWA  +     Y +NYD +K +N + QM   W +    G E++  K   
Sbjct: 133 CRYFTYSAEYIIWARKNNNVSHY-YNYDFMKMSNANHQMTDVWNLSAIEGWEKIHGK--- 188

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  LL+R++ +ST+PG  ILDPF GS T+G  A  L+R F+GI+++Q Y++++
Sbjct: 189 --HPTQKPINLLARVIAASTRPGAWILDPFAGSSTTGVTANLLKRRFLGIDIEQKYLELS 246

Query: 262 TKR 264
             R
Sbjct: 247 ILR 249


>gi|149923216|ref|ZP_01911628.1| putative DNA methylase [Plesiocystis pacifica SIR-1]
 gi|149815932|gb|EDM75449.1| putative DNA methylase [Plesiocystis pacifica SIR-1]
          Length = 324

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 107/295 (36%), Gaps = 38/295 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--------PDHSLVDAVT----- 69
           I +GN++ +L   P  S DLI+ DPP+N        R         D             
Sbjct: 36  IFEGNNLELLAAQPDGSFDLIYIDPPFNTGRRQSRTRTRMVGDAEGDRRGFGGKRYRTIK 95

Query: 70  -DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
             +     SF+ +  F    L+   R+L P G+ ++   Y        +L ++       
Sbjct: 96  VGTRSFSDSFDDFLEFLEPRLVEAHRLLAPTGSFFLHIDYREAHYCKVLLDDIFGRASFM 155

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------------- 175
                +        +R+ + H+T+ W +  PK   YTF ++A+                 
Sbjct: 156 NELIWAYDYGARSKKRWSSKHDTIFWYARDPK--NYTFEFEAMDRIPYMAPGLVSAEKAA 213

Query: 176 EDVQMRSDWLIPICS--GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
                   W   I    G ER         +PTQKP  +L RI+   ++PGD +LD F G
Sbjct: 214 RGKTPTDVWWHTIVPTKGKER-------TGYPTQKPLGILERIVKVHSRPGDRVLDFFAG 266

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           SGT+G    KL R+   I+   + I +  +R+    P               P  
Sbjct: 267 SGTTGEACAKLGRNCTLIDANPEAIAVMRRRLEFANPRIVEAERPSEQAIAAPDD 321


>gi|205354287|ref|YP_002228088.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205274068|emb|CAR39074.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326629410|gb|EGE35753.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 294

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/280 (30%), Positives = 142/280 (50%), Gaps = 33/280 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+     ++
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I   L+    + +   +    +      
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + F + +E ++    +PK+  YTFN DA+             +        +      G
Sbjct: 120 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA     
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGC 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
            FIGIE+  +Y+ +  +R++        EL  +  ++T+ 
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQN 277


>gi|323946891|gb|EGB42907.1| DNA methylase [Escherichia coli H120]
          Length = 294

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ P DI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPSDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|254038426|ref|ZP_04872484.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|226840050|gb|EEH72071.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
          Length = 294

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ P DI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPADIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|266582|sp|P29538|MTH1_HAEPA RecName: Full=Modification methylase HpaI; Short=M.HpaI; AltName:
           Full=Adenine-specific methyltransferase HpaI
 gi|216715|dbj|BAA01519.1| HpaI methyltransferase [Haemophilus parainfluenzae]
          Length = 314

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 131/308 (42%), Gaps = 31/308 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  N+I  L+ L   S+DLI  DPPYNL  +                  D   +F  Y
Sbjct: 4   RLICSNAIKALKNLEENSIDLIITDPPYNLGKDYGTT--------------DDNLNFNKY 49

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F+  WL  C RVLKP+GT+++      I  I  +L+       N  +          +
Sbjct: 50  LEFSHEWLEECYRVLKPHGTIYIFMGMKYISYIYKILEQDLGMYFNSWITWYYTQGIG-K 108

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN---- 197
            R +   H+ ++  +  PK   +TFN D ++   +  +  ++      S      +    
Sbjct: 109 TRGYSPRHDDILMFTKHPK--KFTFNLDRIRVPQKYYRSVNNMRGANPSNVWEFSHVHYC 166

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               K HPTQKPEAL  R++++S+  GDI+LDPF GSGT   V K L RS IGI++ ++Y
Sbjct: 167 NKNRKPHPTQKPEALYERMILASSNEGDIVLDPFVGSGTLNFVCKHLNRSGIGIDINKEY 226

Query: 258 IDIATKR----------IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
           I++A +R          I         +L+    ++       N  ++       + L  
Sbjct: 227 IEMAKERLDSEFNGFDSIDERMKRCPNDLSDPVIRKQYIINHINWFLKNHENAREEFLNE 286

Query: 308 AQGNISAT 315
            +      
Sbjct: 287 VKTKYYKK 294


>gi|209757524|gb|ACI77074.1| putative methyltransferase [Escherichia coli]
          Length = 296

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/289 (30%), Positives = 136/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II GN+++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGNALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 64  IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288


>gi|213028799|ref|ZP_03343246.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 279

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/271 (30%), Positives = 138/271 (50%), Gaps = 33/271 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+     ++
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I   L+    + +   +    +      
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + F + +E ++    +PK+  YTFN DA+             +        +      G
Sbjct: 120 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA    R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
            FIGIE+  +Y+ +  +R++        EL 
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELD 268


>gi|282878857|ref|ZP_06287624.1| DNA (cytosine-5-)-methyltransferase [Prevotella buccalis ATCC
           35310]
 gi|281299065|gb|EFA91467.1| DNA (cytosine-5-)-methyltransferase [Prevotella buccalis ATCC
           35310]
          Length = 295

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 99/252 (39%), Positives = 140/252 (55%), Gaps = 10/252 (3%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           ++S  ++   +I+G+ +  L K      D++FADPPY L   G +      +V      W
Sbjct: 10  KSSSKDF--TLIQGDCVETLSKFKFG-FDMVFADPPYFLS-GGGISYQSGKVVCVDKGDW 65

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK  + E  DAF   WL A R  +K N T+W+ G++HNIF +   L  L F ILN I W 
Sbjct: 66  DKPVTSEELDAFNLRWLTAVREHMKDNATIWISGTHHNIFSVQQQLLKLGFKILNIITWA 125

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PN   R F  + E +IWA  SPK   Y FNY  +K  N D QM   W +P     
Sbjct: 126 KTNPPPNISCRYFTFSTEFIIWARKSPKVPHY-FNYALMKKLNGDKQMTDVWQLPSIGKW 184

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+   K     HPTQKP  +L+RI+ +S++P   ILDPF GSGT+G  A  L R+++G+E
Sbjct: 185 EKSCGK-----HPTQKPLGVLARIIQASSEPNSWILDPFSGSGTTGIAANLLGRNYLGLE 239

Query: 253 MKQDYIDIATKR 264
             +D++ ++ KR
Sbjct: 240 KDKDFLLMSKKR 251


>gi|300917417|ref|ZP_07134082.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|300415327|gb|EFJ98637.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
          Length = 294

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 133/281 (47%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HP QKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPKQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|213580282|ref|ZP_03362108.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 267

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 138/270 (51%), Gaps = 33/270 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+     ++
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I   L+    + +   +    +      
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + F + +E ++    +PK+  YTFN DA+             +        +      G
Sbjct: 120 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA    R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
            FIGIE+  +Y+ +  +R++        EL
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENEL 267


>gi|157157471|ref|YP_001464736.1| putative methyltransferase [Escherichia coli E24377A]
 gi|157079501|gb|ABV19209.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E24377A]
          Length = 294

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 134/281 (47%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPT+KPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTRKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|148654309|ref|YP_001274514.1| adenine-specific DNA-methyltransferase [Roseiflexus sp. RS-1]
 gi|148566419|gb|ABQ88564.1| Site-specific DNA-methyltransferase (adenine-specific) [Roseiflexus
           sp. RS-1]
          Length = 303

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 118/286 (41%), Gaps = 20/286 (6%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---NGQLYRPDHSLVDAVTDSWDKFSS- 77
           KI   ++I VL  LP++SVDLI+ DPP+N        QL        D V     ++ S 
Sbjct: 14  KIYLADNIDVLRTLPSESVDLIYIDPPFNTGKVQERTQLKTVRSESGDRVGFQGHRYESI 73

Query: 78  ----------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
                     F+ Y AF    L+   R+L P+G L+V   Y  +     +L  +      
Sbjct: 74  VVGKKRFADLFDDYLAFLEPRLVEAHRILAPHGCLYVHLDYREVHYCKVLLDAIFDRACF 133

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQMR 181
                 +         R+   H+T++  +  P    +         Y A      +   R
Sbjct: 134 LNEIIWAYDYGGRPRDRWPPKHDTILLYAKVPGQHVFNLDAIERIPYMAPGLVGPEKAAR 193

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                     +    N   +  +PTQKP  +L RI+ +S+ PG ++LD F GSGT+G  A
Sbjct: 194 GKLPTDTWWHTIVPTNGSEKTGYPTQKPLGILRRIIQASSHPGAVVLDFFAGSGTTGIAA 253

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            +L R FI ++  Q+ + +  +R   ++ +  +    +  ++ E +
Sbjct: 254 LELGRRFILVDNSQEALQVMARRFDGIRGITWVGFDPMPYQKGEKQ 299


>gi|157148841|ref|YP_001456160.1| putative methyltransferase [Citrobacter koseri ATCC BAA-895]
 gi|157086046|gb|ABV15724.1| hypothetical protein CKO_04674 [Citrobacter koseri ATCC BAA-895]
          Length = 294

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 139/289 (48%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G+++S L+KLP +S DLIFADPPYN+  N           D + +SWD+    E +
Sbjct: 16  KIIHGDALSELKKLPPESADLIFADPPYNIGKN----------FDGLVESWDE----ETF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  +   L+    + +   +    +      
Sbjct: 62  LAWLFECIDECHRVLKKHGTMYIMNSTENMPYLD--LKCRKLFDIKSRIIWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + F + +E ++      K   YTFN D                   N      +  +  
Sbjct: 120 KKYFGSMYEPILMMVKDAK--NYTFNRDDILVETKTGAKRALIDYRKNPPQPYNTQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKP ALLSRI+++S+ PGD +LDPF GS T+GAVA +  R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPRALLSRIILASSNPGDTVLDPFAGSFTTGAVAVETGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            F+GIE+  +Y+ +  +R+         EL  +  ++T      + + E
Sbjct: 238 KFVGIEINDEYVKMGIRRLNVTSHYAENELAKVKKRKTTNLSKKSRMTE 286


>gi|161506057|ref|YP_001573169.1| putative methyltransferase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867404|gb|ABX24027.1| hypothetical protein SARI_04244 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 294

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 142/281 (50%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+     ++
Sbjct: 16  KIILGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I   L+    + +   +    +      
Sbjct: 62  LAWLYECVDECYRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + F + +E ++       +K YTFN DA+             +        +      G
Sbjct: 120 KKYFGSMYEPILMMVK--DSKTYTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKP ALL RI+++S+  GD +LDPF GS T+GAVA    R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNLGDTVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +Y+ I  +R++        +L  +  ++T+ R
Sbjct: 238 KFIGIEINNEYVKIGLRRLSVTSHYSENDLAKVKKRKTKNR 278


>gi|213963061|ref|ZP_03391320.1| DNA methylase [Capnocytophaga sputigena Capno]
 gi|213954402|gb|EEB65725.1| DNA methylase [Capnocytophaga sputigena Capno]
          Length = 265

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 91/250 (36%), Positives = 140/250 (56%), Gaps = 8/250 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+++ +L +   +  D++FADPPY L   G L   +  +V      WDK       +
Sbjct: 15  LLHGDTMELLPQF-HRKFDMVFADPPYFLSNGG-LTVNNGEIVSVNKGDWDKSKGIAFVN 72

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R V+K   T+W+ G+ HNIF +G +L  L F ILN I W K+NP PNF  
Sbjct: 73  DFNRQWLTLVREVMKEEATIWISGTMHNIFSVGQILTELGFKILNIITWEKTNPPPNFSC 132

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ E ++WA    K   Y FNY+ +K  N + QM+  W  P  +  E+   K    
Sbjct: 133 RYFTHSTEHIVWARKEEKTPHY-FNYELMKELNGNKQMKDVWRFPAIAPWEKSCGK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP ++L+R++++ST+P   ILDPF GS T+G  A    R F+GI+ +Q++++++ 
Sbjct: 188 -HPTQKPLSVLTRLILASTQPNTWILDPFTGSSTTGIAANLQGRKFVGIDKEQEFLELSK 246

Query: 263 KRIASVQPLG 272
            R   +Q   
Sbjct: 247 NRKLEIQNPD 256


>gi|333014708|gb|EGK34054.1| hypothetical protein SFK227_3919 [Shigella flexneri K-227]
          Length = 283

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 132/279 (47%), Gaps = 33/279 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDL+FADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            FIGIE+  +YI +  +R+         EL  +  +R  
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKERPA 276


>gi|320666839|gb|EFX33818.1| putative methyltransferase [Escherichia coli O157:H7 str. LSU-61]
          Length = 294

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 135/289 (46%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  +  PTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENLPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|332998382|gb|EGK17981.1| hypothetical protein SFVA6_4185 [Shigella flexneri VA-6]
          Length = 294

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 136/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDL+FADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIYYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|317130947|ref|YP_004097229.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475895|gb|ADU32498.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           cellulosilyticus DSM 2522]
          Length = 254

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 122/251 (48%), Gaps = 10/251 (3%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++I + N    ++ +P +S+ L+ ADPPYN+   G            + + WD      
Sbjct: 10  LNRIYQRNCTEGMKMIPGESISLVIADPPYNIGKKGSFIEAKDKHHHTIREDWDNI-PLN 68

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            ++ F   W+  C RVLKP G+L   GS+HNI  I  +++   + +    +W KSNP P+
Sbjct: 69  EFEKFNNDWINECFRVLKPGGSLLAWGSHHNIHIIAQLMEQTGYDMKPFYIWEKSNPAPS 128

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           + GR    + E L+W +     K +T+N D  K+ N    +++ +   +    E+ + + 
Sbjct: 129 WSGRLPTTSTEYLLWGTK---GKNWTYNLDYAKSINNGKNIKNVFKTSLTPPKEKKKGR- 184

Query: 200 GEKLHPTQKP-EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                P QK  E L   ++   +  GDIIL PF GSGT   VAK   R FI  E K +YI
Sbjct: 185 ----FPCQKRIEGLTDHLVKLHSLKGDIILVPFCGSGTECVVAKMYGRDFISFETKPEYI 240

Query: 259 DIATKRIASVQ 269
            +A  R+  + 
Sbjct: 241 VLANNRLDDIC 251


>gi|206889902|ref|YP_002248225.1| modification methylase BamHI [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741840|gb|ACI20897.1| modification methylase BamHI [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 338

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/274 (27%), Positives = 124/274 (45%), Gaps = 30/274 (10%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           +N+N      +KII G+ + ++ K+P  SVD+ FADPP+NL+     Y  +H        
Sbjct: 2   QNKNFSKSLLNKIIFGDCLEIMRKIPDNSVDVTFADPPFNLKKKYNSYYDEH-------- 53

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
                   E Y ++ + WL    R+ KP G+++V    HNI +      +    I     
Sbjct: 54  ------DVEIYLSWCKEWLYEMVRITKPTGSIFV----HNIPKWLIYFGSYLNEIAIFRH 103

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY------------DALKAANEDV 178
           W   + M + RG+     H  +++   S K K Y                         +
Sbjct: 104 WIAWDAMGSPRGKTLLPNHYGILYYVKSDKFKFYDIRMLHKRCRKCKYILQDYGGKKAQM 163

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                 +  + +   R+R++     HP Q P  L+ R+L+ ++  GD+ILDPF G+GT+ 
Sbjct: 164 HQFGPLVSDVWTDIHRIRHRKRRDKHPCQLPVHLIERLLLMTSDEGDVILDPFVGTGTTA 223

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
             AK+L R FIGI++ + YI+IA K++   Q   
Sbjct: 224 IAAKRLGRRFIGIDIDEKYIEIAHKKLKETQVTM 257


>gi|332999339|gb|EGK18925.1| hypothetical protein SFK272_4070 [Shigella flexneri K-272]
          Length = 294

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 136/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDL+FADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|283788096|ref|YP_003367961.1| DNA methylase [Citrobacter rodentium ICC168]
 gi|282951550|emb|CBG91249.1| putative DNA methylase [Citrobacter rodentium ICC168]
          Length = 291

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 33/277 (11%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLPA+SVDLIFADPPYN+  +           D + +SWD+      + 
Sbjct: 17  IILGDALNELKKLPAESVDLIFADPPYNIGKD----------FDGMIESWDE----NVFL 62

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +  A +  C RVLK  GT++++ S  N+  I   L+    + +   +    +       
Sbjct: 63  TWLFACIDECHRVLKKQGTMYIMNSTENMPHID--LKCRGLFTIKSRIVWSYDSSGVQAK 120

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSGS 192
           + F + +E ++      K   YTFN +++             +        +      G+
Sbjct: 121 KFFGSMYEPILMMVKDAK--HYTFNRESILVETKTGAKRALIDYRKNPPQPYNTQKVPGN 178

Query: 193 ----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                R+R   D  + HPTQKP ALL RI+++S+ PGD +LDPF GS T+GAVA    R 
Sbjct: 179 VWEFPRVRYLMDEYENHPTQKPMALLQRIVLASSNPGDTVLDPFAGSFTTGAVAVAAGRK 238

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           FIGIE+  +Y+ +  +R+         EL  +  ++T
Sbjct: 239 FIGIEINTEYVKMGLRRMRVSSHFTTDELAKVKKRKT 275


>gi|283836189|ref|ZP_06355930.1| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291067540|gb|EFE05649.1| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 294

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 140/290 (48%), Gaps = 33/290 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++SVDLIFADPPYN+  +           D + + W++    E +
Sbjct: 16  KIILGDALTELKKLPSESVDLIFADPPYNIGKD----------FDGMVERWNE----ETF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C R+LKP+GT++++ S  N+  I   L+    + +   +    +      
Sbjct: 62  LAWLFECIDECHRILKPHGTMYIMNSTENMPYID--LKCRQIFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
              F + +E ++      K   YTFN D                   N         +  
Sbjct: 120 KNYFGSMYEPILMMVKDQK--NYTFNRDDVLVEAKTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKP+ALL RI+++S+ P D +LDPF GS T+GA A +L R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLERIILASSNPDDKVLDPFAGSFTTGATAVELGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
            F+GIE+  +Y+ +  +R++       +EL  +  ++T+     + L   
Sbjct: 238 QFVGIEINAEYVKMGLRRLSIGSHFSEVELAKVKKRKTKNLSKKSRLTAN 287


>gi|256820978|ref|YP_003142257.1| DNA methylase N-4/N-6 domain-containing protein [Capnocytophaga
           ochracea DSM 7271]
 gi|256582561|gb|ACU93696.1| DNA methylase N-4/N-6 domain protein [Capnocytophaga ochracea DSM
           7271]
          Length = 265

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 95/242 (39%), Positives = 138/242 (57%), Gaps = 8/242 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+++ +L +      D++FADPPY L   G L   +  +V      WDK       +
Sbjct: 15  LLHGDTMELLPQF-HHKFDMVFADPPYFLSNGG-LTVNNGEIVSVNKGDWDKSKGIVFVN 72

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R V+K + T+W+ G+ HNIF IG +L  L F ILN I W K+NP PNF  
Sbjct: 73  DFNRQWLTLVREVMKEDATIWISGTMHNIFSIGQILTELGFKILNIITWEKTNPPPNFSC 132

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ E +IWA    K   Y FNY  +K  N + QM+  W  P  +  E+   K    
Sbjct: 133 RYFTHSTEQIIWARKEEKTPHY-FNYKLMKELNGNKQMKDVWRFPAIAPWEKTCGK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP ++L+R++++STKP   ILDPF GS T+G  A  L R F+GI+ +QD+++++ 
Sbjct: 188 -HPTQKPLSVLTRLILASTKPNAWILDPFTGSSTTGIAANLLGRKFVGIDKEQDFLELSK 246

Query: 263 KR 264
            R
Sbjct: 247 LR 248


>gi|81427756|ref|YP_394755.1| putative adenine-specifique DNA methyltransferase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78609397|emb|CAI54443.1| Putative adenine-specifique DNA methyltransferase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 261

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 94/248 (37%), Positives = 140/248 (56%), Gaps = 9/248 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I  ++   +++ P+ SVD+I ADPPY L   G        +V      WDK +  +  
Sbjct: 15  KLICSDTFECMQRFPSNSVDVIIADPPYFLSNGG-FSNSGGKMVSVNKGEWDKINDVKP- 72

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           + F    + +  R+LK +GT+WV GS HNI+ +G +L    F ILN+I W+KSNP PN  
Sbjct: 73  EVFYTRLIRSADRILKKDGTIWVFGSMHNIYILGYLLPKYGFKILNNITWQKSNPAPNLS 132

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET+IWA    ++    FNYD +K  N   QM+  W  P  +  ER   +   
Sbjct: 133 KRMFTHSTETIIWAKK--ESGKQFFNYDLMKELNHSSQMKDVWTTPTINNYERRFGR--- 187

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP +++ R++ +ST  G I+LDPF GSGT+     +     IGI+  QDY++IA
Sbjct: 188 --HPTQKPLSVIDRMVKASTDSGMILLDPFVGSGTTAVAGARNGIRTIGIDNSQDYLNIA 245

Query: 262 TKRIASVQ 269
            KR+++ Q
Sbjct: 246 IKRVSNFQ 253


>gi|332752465|gb|EGJ82854.1| hypothetical protein SFK671_3912 [Shigella flexneri K-671]
          Length = 283

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 131/279 (46%), Gaps = 33/279 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++ + L+KLP +SVDL+FADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDAFAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            FIGIE+  +YI +  +R+         EL  +  +R  
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKERPA 276


>gi|315224178|ref|ZP_07866018.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga ochracea F0287]
 gi|314945911|gb|EFS97920.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga ochracea F0287]
          Length = 265

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 92/242 (38%), Positives = 137/242 (56%), Gaps = 8/242 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+++ +L +   +  D++FADPPY L   G L   +  +V      WDK       +
Sbjct: 15  LLHGDTMELLPQF-HRKFDMVFADPPYFLSNGG-LTVNNGEIVSVNKGDWDKSKGIAFVN 72

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R V+K   T+W+ G+ HNIF IG +L  L   ILN I W K+NP PNF  
Sbjct: 73  DFNRQWLTLVREVMKEEATIWISGTMHNIFSIGQILTELGLKILNIITWEKTNPPPNFSC 132

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ E +IWA    K   Y FNY+ +K  N + QM+  W  P  +  E+   K    
Sbjct: 133 RYFTHSTEQIIWARKEEKTPHY-FNYELMKELNGNKQMKDVWRFPAIAPWEKSCGK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP ++L+R++++STKP   ILDPF GS T+G  A    R F+GI+ ++D+++++ 
Sbjct: 188 -HPTQKPLSVLTRLILASTKPDAWILDPFTGSSTTGIAANLQGRKFVGIDREKDFLELSK 246

Query: 263 KR 264
            R
Sbjct: 247 LR 248


>gi|298346582|ref|YP_003719269.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236643|gb|ADI67775.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           curtisii ATCC 43063]
          Length = 432

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 110/261 (42%), Gaps = 16/261 (6%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG-----QLYRPDHSLVDAVTDS 71
           +++I  G ++ V+  L      SVD I+ DPP+N   +        +R D      V   
Sbjct: 47  ENRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGTDYVQRIQTHHRGDSKRTITVKQY 106

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            D++ +   Y       L   RR L P GT+++   +H+   +  ++  +          
Sbjct: 107 GDRWQT-ADYLQNLYERLTVLRRFLSPTGTIFLHCDWHSSATLRLIMDEVFGGRNLINEI 165

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWL 185
             +        R F + H+T+++ + + +   +  +        A+     ++      +
Sbjct: 166 VWAYASGGGSRRAFGHKHDTILFYARNRRRYYFDPDAVRVAYNAAIAPKRRELFNPQGMV 225

Query: 186 IPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            P      R  N     + +PTQKP  ++ R + ++  PG +++D F GSG++   A +L
Sbjct: 226 APDVWQISRPPNHSDTWVGYPTQKPLEVMQRAIAAACPPGGLVMDCFAGSGSTLVAAAQL 285

Query: 245 RRSFIGIEMKQDYIDIATKRI 265
            R F+GIE     + +A +R+
Sbjct: 286 GRRFLGIERNSLGVHLARRRL 306


>gi|154148672|ref|YP_001406783.1| DNA methylase [Campylobacter hominis ATCC BAA-381]
 gi|153804681|gb|ABS51688.1| DNA methylase [Campylobacter hominis ATCC BAA-381]
          Length = 271

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 98/272 (36%), Positives = 143/272 (52%), Gaps = 8/272 (2%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + K  +  G++  +L K  +   DLIFADPPY L  +G L      +V     +WDK  
Sbjct: 7   DDKKFTLYNGDTFEILPKFKS-KFDLIFADPPYFLSNDG-LSIQSGRIVSVNKGNWDKSY 64

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +  D F   WL   +  L  NG++ + G+YHNIF IG  LQ L+F ILN I W+K+NP
Sbjct: 65  GIDEIDKFNLEWLEMAKNALNDNGSVMISGTYHNIFSIGRALQKLDFKILNIITWQKTNP 124

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            PNF  R   ++ E +IWA  S K   + FNY+ +K  N++ QM+  W  P  +  E+  
Sbjct: 125 PPNFSCRYLTHSTEQIIWARKSEK-HKHIFNYELMKKINDNKQMKDVWAFPAIAPWEKSC 183

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K     HPTQKP  LL R+++ ++     I DPF GS T+G  A  L R+FIGIE +++
Sbjct: 184 GK-----HPTQKPLRLLVRLILMASYENSTICDPFSGSSTTGIAANLLGRNFIGIEKEKE 238

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           +IDI+  R   +    N     +   +    +
Sbjct: 239 FIDISLARKNELDQNRNKIFNKIDDFKIFKEL 270


>gi|269925476|ref|YP_003322099.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789136|gb|ACZ41277.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 289

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 107/273 (39%), Gaps = 24/273 (8%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN--------GQLYRPDHSLVDAV 68
               +KI  G+++ VLE LP+ SV+LI+ DPP+N             +  + D       
Sbjct: 1   MSSSNKIFFGDNLRVLESLPSNSVNLIYIDPPFNTGRRQVRISMSVDRDDQGDRKGFGGY 60

Query: 69  T------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          ++ Y AF    L    RVL  NG L+    Y  +     +L ++ 
Sbjct: 61  KYLTKVLGKLSFDDIYDDYLAFLEPRLREAHRVLTANGALYFHIDYREVHYCKILLDSIF 120

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------- 175
                      +        R++   H+ +++         Y FN D +           
Sbjct: 121 GRDNFLNEIIWAYDYGGRSKRKWPTKHDNILYYVK--DRNNYVFNADEIDRLPYMAPSLV 178

Query: 176 -EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
             D          +   +        +  +PTQKP A+L RI+ +S+ PGDI+LD F GS
Sbjct: 179 GGDKAKLGKLPTDVWWQTIVSPTGKEKTGYPTQKPLAILERIIRASSCPGDIVLDFFAGS 238

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GT+G  A KL RSFI ++  ++ I +   R   
Sbjct: 239 GTTGVAAHKLGRSFILVDNNEEAIRVMRSRFRD 271


>gi|30064593|ref|NP_838764.1| putative methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|56480302|ref|NP_709057.2| putative methyltransferase [Shigella flexneri 2a str. 301]
 gi|110807122|ref|YP_690642.1| putative methyltransferase [Shigella flexneri 5 str. 8401]
 gi|30042852|gb|AAP18575.1| putative methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|56383853|gb|AAN44764.2| putative methyltransferase [Shigella flexneri 2a str. 301]
 gi|110616670|gb|ABF05337.1| putative methyltransferase [Shigella flexneri 5 str. 8401]
 gi|281602639|gb|ADA75623.1| putative methyltransferase [Shigella flexneri 2002017]
 gi|313648496|gb|EFS12938.1| uncharacterized adenine-specific methylase yhdJ [Shigella flexneri
           2a str. 2457T]
 gi|332752424|gb|EGJ82814.1| hypothetical protein SF434370_3499 [Shigella flexneri 4343-70]
 gi|332754622|gb|EGJ84988.1| hypothetical protein SF274771_3895 [Shigella flexneri 2747-71]
 gi|332765261|gb|EGJ95488.1| methyltransferase DNA adenine methyltransferase [Shigella flexneri
           2930-71]
 gi|332999897|gb|EGK19480.1| hypothetical protein SFK218_4295 [Shigella flexneri K-218]
 gi|333014545|gb|EGK33892.1| hypothetical protein SFK304_4117 [Shigella flexneri K-304]
          Length = 294

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 135/289 (46%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++ + L+KLP +SVDL+FADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDAFAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|300817483|ref|ZP_07097699.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300529781|gb|EFK50843.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
          Length = 294

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 33/289 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+S DLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESDDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I   LQ    + +   +    +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
            + + + +E ++      K   YTFN DA                  N         +  
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            FIGIE+  +YI +  +R+         EL  +  ++T      + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286


>gi|283778311|ref|YP_003369066.1| DNA methylase N-4/N-6 domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283436764|gb|ADB15206.1| DNA methylase N-4/N-6 domain protein [Pirellula staleyi DSM 6068]
          Length = 295

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 111/290 (38%), Gaps = 40/290 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++I+G+ ++ L  LPA  VDL FADPP+N+  +               D +D   + + 
Sbjct: 7   NQLIQGDCVAGLASLPAGCVDLAFADPPFNIGYDY--------------DEYDDRRATDD 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +   WL    RVLKP+GT W+         +   +Q  +       V        N 
Sbjct: 53  YLTWCDQWLAEVSRVLKPDGTFWLAIGDEYAAELKVAMQRQHGLHCRSWVVWYYTFGVNC 112

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFN-----------------------YDALKAANED 177
           + +    +H  L      PK   +  +                        D        
Sbjct: 113 KAKF-SRSHAHLFHMVKDPKKFTFNVDEIRVPSARQLVYADNRANPKGRLPDDTWILRPQ 171

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                           R+     E+   H  Q PE LL RI+ +++ PG+++LDPF GSG
Sbjct: 172 DLPDGFQPDDDTWYFPRVAGTFKERAGWHGCQMPEQLLGRIIKATSNPGELVLDPFSGSG 231

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           T+  VAKKL R ++G E+ ++Y    T R+   +   ++       K   
Sbjct: 232 TTLVVAKKLGRKYLGFELSKEYAARVTDRLKETKSGDDLNGAAEPLKSAP 281


>gi|315154648|gb|EFT98664.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0043]
          Length = 393

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 117/286 (40%), Gaps = 31/286 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I G++++ L+K+ + S+DLI+ DPP+  Q   +L   ++       DSW    S   Y 
Sbjct: 3   LILGDNLNELKKIESDSIDLIYLDPPFFTQKKQKLKNKENKEYS-FDDSW---ESIAEYT 58

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F +  L  C+RVLK  G++++         +   L  +    +       +    +   
Sbjct: 59  TFIKDRLFECKRVLKETGSIFLHCDKTASHYLRVCLDEVFGMNMFQSEIIWNYKRWSNSK 118

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK---- 198
           +   N H+ + + S + K K  T   D     N D  +             +L       
Sbjct: 119 KGLLNNHQNIYFYSKTGKFKFNTIYTDYSSTTNIDQILADRIKDENSKTKYKLDENGEPL 178

Query: 199 -----------------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                                       +PTQKP  LL +I+  +T+  DIILDPF GSG
Sbjct: 179 IGKEKKGVPLSDVWNIPYLNPKAKERTGYPTQKPILLLEQIIKLTTEENDIILDPFCGSG 238

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
           T+   +K L+R +IGI+  +D I +A +R+ +V    +  L     
Sbjct: 239 TTLVASKILKRRYIGIDQSKDAIKLAEERLKNVVKTESNLLKKGES 284


>gi|237730180|ref|ZP_04560661.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908786|gb|EEH94704.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 294

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 145/287 (50%), Gaps = 33/287 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++SV+LIFADPPYN+  +           D + +SWD+    EA+
Sbjct: 16  KIILGDALTELKKLPSESVELIFADPPYNIGKD----------FDGMVESWDE----EAF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C R+LKP+GT++++ S  N+  I   L+    + +   +    +      
Sbjct: 62  LAWLFECIDECHRILKPHGTMYIMNSTENMPYID--LKCRPLFTIKSRIVWSYDSSGVQA 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
              F + +E ++      K   YTFN D +             +        +      G
Sbjct: 120 KNYFGSMYEPILMMVKDQK--NYTFNRDDILVEAKTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R   D  + HPTQKP+ALL RI+++S+ P D +LDPF GS T+GA A +L R
Sbjct: 178 NVWEFPRVRYLMDEYENHPTQKPKALLERIILASSNPDDKVLDPFAGSFTTGATAVELGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
            F+GIE+  +Y+ +  +R++       IEL  +  ++T+     + L
Sbjct: 238 KFVGIEINTEYVKMGLRRLSIGSHFSEIELAKVKKRKTKNLSKKSRL 284


>gi|281422930|ref|ZP_06253929.1| modification methylase CcrMI [Prevotella copri DSM 18205]
 gi|281403022|gb|EFB33702.1| modification methylase CcrMI [Prevotella copri DSM 18205]
          Length = 394

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 101/274 (36%), Positives = 143/274 (52%), Gaps = 10/274 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+S  +L++L  + VD+IFADPPY L  + +  +   + V      WDK  S+E  +
Sbjct: 13  LYHGDSNIILDQL-EEKVDMIFADPPYFLSNSKKTIQFGKTKVCD-KGDWDKVRSWEEIN 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           +F R W+  CR++LK NGT+WV G+YHNIF +   L    F ILN IVW+K +P P   G
Sbjct: 71  SFNRIWIEKCRKLLKENGTIWVCGTYHNIFSVEQCLIEFGFKILNIIVWQKLDPPPTPYG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            R   + E ++WA  +     + F+YD LK  N   +M   W        ER   K    
Sbjct: 131 GRLNFSAEYIVWARKNTN-VPHCFHYDLLKQMNGGKEMPDVWKFARPGFWERKCGK---- 185

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  LL RI+ + T+   IILDPF GS T+G  A  L R FIGI+M+++Y+D   
Sbjct: 186 -HPTQKPLRLLYRIVQTCTEKEGIILDPFCGSCTTGIAANLLSRKFIGIDMERNYLDYGI 244

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           +R    +            K +E      +LV  
Sbjct: 245 RR--KSEIKDPNIAEKYLQKISENPDEITVLVNH 276


>gi|113868574|ref|YP_727063.1| DNA-methyltransferase [Ralstonia eutropha H16]
 gi|113527350|emb|CAJ93695.1| DNA-Methyltransferase [Ralstonia eutropha H16]
          Length = 308

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 113/257 (43%), Gaps = 27/257 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + +    + +LP  SVDLI ADPPY L  +      D  L+             + Y
Sbjct: 29  RLFQEDMFEGIARLPDGSVDLIVADPPYGLGKDYG---NDSDLLSG-----------QEY 74

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+ A    L P GTL++  ++     +  ML+     ++N+I+W +  P     
Sbjct: 75  LDWSERWMNAVVPKLAPKGTLYLFCTWQYSPELFVMLKRR-LTMINEIIWDRRVPSMGGT 133

Query: 142 GRRFQNAHETLIWASPSPKAK-----------GYTFNYDALKAANEDVQMRSDWLIPICS 190
            R+F + H+ + + + +                 T    +         +   +      
Sbjct: 134 TRKFSSVHDNIGFFARARDYYFDLDPVRIPYDPETKKARSRPRFEGKKWLEVGYNPKDLW 193

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              R+  +D E+  HPTQKP  ++ R+++SS  PG ++LDPF GSGT+     +  R F 
Sbjct: 194 SVSRIHRQDPERANHPTQKPLEIVERMVLSSCPPGGLVLDPFAGSGTTAVACLRHGRRFA 253

Query: 250 GIEMKQDYIDIATKRIA 266
           G E+  +Y+ +A  R++
Sbjct: 254 GFEINPEYVQVACDRVS 270


>gi|313207303|ref|YP_004046480.1| DNA methylase n-4/n-6 domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312446619|gb|ADQ82974.1| DNA methylase N-4/N-6 domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022082|gb|EFT35112.1| DNA methylase N-4/N-6 domain protein [Riemerella anatipestifer
           RA-YM]
 gi|325335248|gb|ADZ11522.1| DNA modification methylase [Riemerella anatipestifer RA-GD]
          Length = 299

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 93/242 (38%), Positives = 138/242 (57%), Gaps = 8/242 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+++ +L K      D++FADPPY L  NG L   +  +V      WDK   FE  +
Sbjct: 15  LLHGDTMELLPKF-EHKFDMVFADPPYFLSNNG-LSIQNGKIVSVNKGKWDKSEGFEFIN 72

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R  +K + T+W+ G+ HNIF +G +L  L F ILN + W K+NP PNF  
Sbjct: 73  DFNRKWLSLVREKMKGDATIWISGTMHNIFSVGQILTELGFKILNIVTWEKTNPPPNFSC 132

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F  + E +IWA  + K   Y FNY  +K  N + QM+  W +P  +  E+   K    
Sbjct: 133 RYFTYSTEQIIWARKTEKVPHY-FNYKLMKQLNGNRQMKDVWKLPAIAPWEKSCGK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP ++L+R++++STKP   ILDP  GS T+G  A    R F+GI+ +++++ I+ 
Sbjct: 188 -HPTQKPLSVLTRLILASTKPNAWILDPLAGSSTTGIAANLANRRFLGIDQEEEFLTISK 246

Query: 263 KR 264
            R
Sbjct: 247 NR 248


>gi|320160760|ref|YP_004173984.1| methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319994613|dbj|BAJ63384.1| methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 295

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 67/278 (24%), Positives = 112/278 (40%), Gaps = 24/278 (8%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--------PDHSLVDAV 68
             W  ++  G+++S+L +LP++SV LI+ DPP+N        R         +       
Sbjct: 1   MTWIRRVYFGDNLSILRRLPSESVHLIYIDPPFNTGKEQSRTRLRVVQSDTGNRRGFGGR 60

Query: 69  T------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
           T      D       F+ Y+AF    L    R+L PNG+L+    Y  +      L  + 
Sbjct: 61  TYESIPIDEKAYPDDFDDYEAFLVPRLEEAYRILTPNGSLYFHIDYREVHYCKIWLDRIF 120

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--------A 174
                      +         R+   H+ +++         YTFN DA+           
Sbjct: 121 GRDCFLNEIIWAYDYGGKPKNRWPAKHDNILFYVK--DPNHYTFNVDAIDREPYMAPGLV 178

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
             +   R      +   +    N   +  +PTQKP  ++ RI+ +S+  GD+++D F GS
Sbjct: 179 GPEKAARGKLPTDVWWHTIVGTNSKEKTGYPTQKPVGVIDRIIKASSNAGDVVMDFFAGS 238

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           GT G    KL R FI I+   + I +  +R A V+ + 
Sbjct: 239 GTVGESCLKLNRQFILIDNHPEAIHVMRQRFAGVEGIE 276


>gi|299066411|emb|CBJ37596.1| Site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum CMR15]
          Length = 270

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 121/267 (45%), Gaps = 27/267 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +  L   SVDL+ ADPPY L  +      D   +             EA
Sbjct: 7   DGIFNEDCIAGVGHLADGSVDLVIADPPYGLGKDYG---NDSDKLSG-----------EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSLYLFCTWQYAPELFVMLKRRLS-MINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
             R+F + H+ + + + S                 T    + K       +   +     
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
               RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+ A   +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAAACARLGRRF 231

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIE 275
            G E+  +Y  +A +R+A+V PLG   
Sbjct: 232 AGFEINAEYCRVARERVAAVTPLGPQS 258


>gi|153951969|ref|YP_001398881.1| DNA methylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939415|gb|ABS44156.1| DNA methylase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 282

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 94/247 (38%), Positives = 137/247 (55%), Gaps = 8/247 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + + +   +L K   K  DLIFADPPY L  +G L   +  +V      WDK +  E  D
Sbjct: 18  LYQNDCNKLLPKF-EKQFDLIFADPPYFLSNDG-LSIQNGKIVSVNKGDWDKGNDIEKID 75

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL   +  L+  G++ + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF  
Sbjct: 76  EFNLKWLSNAKIALQDTGSILICGTYHNIFSLGRILQKLDFKILNIITWQKTNPPPNFSC 135

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R   ++ E +IWA  S K   + FNY+ L+  N + QMR  W     +  E+   K    
Sbjct: 136 RYLTHSTEQIIWARKSHK-YKHIFNYEILRFLNSNKQMRDVWTFNAIAPWEKTNGK---- 190

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP ALL+R+++ ++    +I DPF GS T+G  A  L R FIG E + ++I+I+ 
Sbjct: 191 -HPTQKPLALLTRLILMASNEDCLICDPFSGSSTTGIGANLLNRKFIGFEKESEFIEISI 249

Query: 263 KRIASVQ 269
            R   ++
Sbjct: 250 ARKKELE 256


>gi|17546701|ref|NP_520103.1| DNA-methyltransferase (DNA-modification methylase) protein
           [Ralstonia solanacearum GMI1000]
 gi|17429000|emb|CAD15684.1| probable dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 270

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 122/267 (45%), Gaps = 27/267 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ + +L   SVDL+ ADPPY L  +      D   +             EA
Sbjct: 7   DGIFNEDCIAGVGRLADGSVDLVIADPPYGLGKDYG---NDSDKLSG-----------EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSLYLFCTWQYAPELFVMLKRRLS-MINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
             R+F + H+ + + + S                 T    + K       +   +     
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
               RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+ A   +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAAACARLGRRF 231

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIE 275
            G E+  +Y  +A +R+A+V PLG   
Sbjct: 232 AGFEINAEYCRVARERVAAVTPLGPQS 258


>gi|60682880|ref|YP_213024.1| putative methyltransferase [Bacteroides fragilis NCTC 9343]
 gi|60494314|emb|CAH09109.1| putative DNA methylase [Bacteroides fragilis NCTC 9343]
          Length = 286

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/272 (29%), Positives = 125/272 (45%), Gaps = 33/272 (12%)

Query: 22  KIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           KII G++I  L+ ++   SVDLIFADPPYN+  N               D W    + + 
Sbjct: 10  KIIHGDAIEALKNEIEDNSVDLIFADPPYNIGKN----------FAGCIDKW---ETDDK 56

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y ++   WL  C R LKP+G  +V+ S   +      L+     +   I +  S+ +   
Sbjct: 57  YLSWCYQWLDLCIRKLKPSGAFYVMTSTQFMPFFDLYLREKLTILSRLIWYYDSSGV--Q 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICS 190
               F + +E +++         YTFN +A+             +        +      
Sbjct: 115 AKNYFGSMYEPILFCVK--DKNNYTFNSEAILVEAKTGAKRGLIDYRKNPPQPYSTEKVP 172

Query: 191 GS----ERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           G+     R+R + D  + HPTQKP ALL RI+ +S+  GD+ILDPF G+ T+  VAK L 
Sbjct: 173 GNVWEFARVRYRMDEYENHPTQKPVALLERIIKASSNEGDLILDPFSGTFTTAFVAKTLN 232

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           R  IGIE+++DY+ I  +R+          + 
Sbjct: 233 RRAIGIELQEDYVKIGLRRLELASEYNGEAIQ 264


>gi|153831218|ref|ZP_01983885.1| DNA methylase [Vibrio cholerae 623-39]
 gi|148873298|gb|EDL71433.1| DNA methylase [Vibrio cholerae 623-39]
          Length = 314

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 119/293 (40%), Gaps = 43/293 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+SI  L+ L ++SVDLIF+DPPYN+                    WDKF + E Y
Sbjct: 40  TLYEGDSIEWLKTLDSESVDLIFSDPPYNINKA----------------DWDKFETQEKY 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+    RVLK  GTL+V G       +  +      +  +              
Sbjct: 84  IDWSMQWISEAYRVLKKEGTLYVCG---FSEILADIKHPSMKYFKSCRWLIWHYKNKANL 140

Query: 142 GRRFQNAHETLIWASPSPKAK---------------GYTFNYDALKAANEDVQMRSDWLI 186
           G  +  +HE+++    S K                  Y  +  A  +   +   R D   
Sbjct: 141 GNDWGRSHESILHLRKSNKKIFNVDDVRVPYGGHTLKYPSHPQAQTSQYSNGSKRKDVWT 200

Query: 187 PICSGSE---------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           P   G++                +  HPTQKPE L+ + +++S+  GD+++DPF GSGT+
Sbjct: 201 PHPRGAKPRDVIEVPTTCNGMGEKTKHPTQKPEELVRKFILASSNEGDLVIDPFSGSGTT 260

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
             VA++L R +   ++   Y + A  R+ ++      E         + R + 
Sbjct: 261 AVVAEQLGRRWAACDINPQYNNWAMDRLDNIVHRTKQEWIDFDRDNDKRRNSI 313


>gi|309783469|ref|ZP_07678172.1| DNA (cytosine-5-)-methyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|308917755|gb|EFP63449.1| DNA (cytosine-5-)-methyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 273

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 27/277 (9%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +  L   SVDL+ ADPPY L  +      D   +             +A
Sbjct: 7   DGIFNEDCITGVGHLADGSVDLVIADPPYGLGKDYG---NDSDKLSG-----------DA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A R  L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIDAVRPKLARNGSLYLFCTWQYAPELFVMLKQR-LTMVNEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
             R+F + H+ + + + S                 T    + K       +   +     
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
               RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+ A   +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMILASCPPGGLVLDPFLGSGTTAAACARLGRRF 231

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            G E+  DY  +A +R+A+V    +        +  E
Sbjct: 232 AGFEINADYCRVARERVAAVHAAADANAQPTESQAPE 268


>gi|187929215|ref|YP_001899702.1| DNA methylase N-4/N-6 domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187726105|gb|ACD27270.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12J]
          Length = 273

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/277 (26%), Positives = 123/277 (44%), Gaps = 27/277 (9%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +E L   SVDL+ ADPPY L  +      D   +             +A
Sbjct: 7   DGIFNEDCITGVEHLADGSVDLVIADPPYGLGKDYG---NDSDKLSG-----------DA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A R  L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIDAVRPKLARNGSLYLFCTWQYAPELFVMLKRR-LTMVNEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
             R+F + H+ + + + S                 T    + K       +   +     
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
               RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+ A   +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMILASCPPGGLVLDPFLGSGTTAAACARLGRRF 231

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            G E+  DY  +A +R+A+V          +  +  E
Sbjct: 232 AGFEINADYCRVARERVAAVHAAAATNAQPIESQAPE 268


>gi|118576552|ref|YP_876295.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118195073|gb|ABK77991.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 264

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 111/249 (44%), Gaps = 17/249 (6%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG---QLYRPDHSLVDAVTDSWDKFS 76
           +D+I  G+ I  +  +   SVDLI  DPP+ +          R + +++D   +      
Sbjct: 17  RDRIFHGDCIEGMAAMKESSVDLIVTDPPFAIGFGARRANYNRKEGNVMDGYNEI----- 71

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           +   Y  FT  W+    RVLK  G+++V   + N+  I   +    F  +N I+WR    
Sbjct: 72  TPAEYPGFTGRWMAGAHRVLKETGSMFVFSGWTNLQDILRAIDETGFKTINHIIWRYQFG 131

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +   R     + H  L       K + YT +  +     +      D         E   
Sbjct: 132 VYTKRRFVSSHYH-CLYVCKNDKKRRFYTESRHS-----DTKSRYRDMEDVWVINREYW- 184

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
              G+K  PT+ P  L+ +IL  S++ GD+++DPF GSG    V+K++ R + G E+ ++
Sbjct: 185 --SGKKKTPTKLPGELIRKILQYSSREGDLVMDPFLGSGQVAVVSKEMGRRYAGFEIVRE 242

Query: 257 YIDIATKRI 265
           Y D A +R+
Sbjct: 243 YYDFALERL 251


>gi|313667091|gb|ADR72989.1| M.BspEI [Bacillus sp. NEBM136]
          Length = 314

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 125/290 (43%), Gaps = 48/290 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+  G+SI  L+ L  +SVDLIFADPPYN++                   WD F + E+Y
Sbjct: 41  KLFLGDSIQWLKTLETESVDLIFADPPYNIKKA----------------EWDTFENQESY 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W++   RVLK NG+L++ G    +  +              +   K+       
Sbjct: 85  IQWSLEWIVEASRVLKKNGSLYICGFSEILADLKHPASKYFKGCKWLVWHYKNKA---NL 141

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSDWLIPICSGSERLRNK 198
           G+ F  +HE+L+    + K   YT N D ++                     GS + R+ 
Sbjct: 142 GKDFGRSHESLLHFRKTKK---YTMNQDLVRIPYGGHTLKYPSHPQAESSQYGSGKKRDN 198

Query: 199 -----------------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                                  + +  HPTQKPE L+ + +++S+  GD+ILDPF GSG
Sbjct: 199 WMPHPLGAKPKDVIEVPTTCNGMNEKTPHPTQKPEELVRKFILASSNRGDVILDPFSGSG 258

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           T+  VA++L R ++  +  + Y + A +RI   +   + E      K  E
Sbjct: 259 TTAVVAEQLGRKWLACDTNRQYNEWAIERIQKAEHKTDEEWFWYDRKNEE 308


>gi|124003829|ref|ZP_01688677.1| adenine-specific DNA methylase [Microscilla marina ATCC 23134]
 gi|123990884|gb|EAY30351.1| adenine-specific DNA methylase [Microscilla marina ATCC 23134]
          Length = 403

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/307 (25%), Positives = 126/307 (41%), Gaps = 35/307 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +K+ +G+ I +L KL A SVDL++ DPP+  Q N  L   D S     +D W    S ++
Sbjct: 4   NKLYQGHCIEILRKLEADSVDLVYFDPPFFTQKNHTLTNRDGSKKYQFSDHW---KSLDS 60

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y       L+  RRVLK +G++++         I T+L  +            S    + 
Sbjct: 61  YLVLIEGCLIESRRVLKNSGSVFLHCDKTVSHHIRTVLDKVFGVKNFRSEIIWSYKRWSN 120

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED----------------------- 177
             +   NAH+ + + S + + K   +  D   + N D                       
Sbjct: 121 SKKGLLNAHQNIYFYSKTKEFKFNQYYTDYAPSTNVDQILQERKKTANGKSVYKTDDSGK 180

Query: 178 ----VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
                + +   L  +               +PTQKP  LL +IL   +  GD+I+DPF G
Sbjct: 181 VILGKEKKGVPLSDVWEIPYLNPKAKERVGYPTQKPVLLLKQILNVGSNKGDLIVDPFCG 240

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           SGT+   AK L R+FIGI+  ++ I +A +R+  +    +  L     K+          
Sbjct: 241 SGTTCVAAKSLERNFIGIDSSEEAISLANQRLQDMLITDSALL-----KKGAKSYIEKTE 295

Query: 294 VERGLIQ 300
            E  L++
Sbjct: 296 EELNLLK 302


>gi|156741069|ref|YP_001431198.1| adenine-specific DNA-methyltransferase [Roseiflexus castenholzii
           DSM 13941]
 gi|156232397|gb|ABU57180.1| Site-specific DNA-methyltransferase (adenine-specific) [Roseiflexus
           castenholzii DSM 13941]
          Length = 305

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 113/284 (39%), Gaps = 24/284 (8%)

Query: 9   INENQNSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQL------------ 53
           + E Q+ + +  +    I   +++ +L  LP+ SVDLI+ DPP+N               
Sbjct: 1   MREAQHFMID-HNTTGAIYLADNLDILRALPSGSVDLIYIDPPFNTGKHQQRVQLKTERS 59

Query: 54  -NGQLYRPDHSLVDAVTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
            +G           ++     +FS  F+ Y AF    L+   RVL P+G+ +    Y  +
Sbjct: 60  DDGDRVGFQGQRYKSIILGSRRFSDVFDDYLAFLEPRLVEAHRVLAPSGSFYFHVDYREV 119

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN---- 167
                +L  +            +         R+   H+ ++    +     +  +    
Sbjct: 120 HYCKVLLDAIFGRESFLNEIIWAYDYGGRPKNRWPPKHDNILLYVKNLSRYVFNVDEIER 179

Query: 168 --YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
             Y A      +   R          +    N   +  +PTQKP  +L RI+ +S+KPG 
Sbjct: 180 IPYMAPGLVGPEKAARGKLPTDCWWHTIVPTNGAEKTGYPTQKPLGILRRIVQASSKPGS 239

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           ++LD F GSGT+G  A +L R FI ++   + + +  +R   V 
Sbjct: 240 LVLDFFAGSGTTGIAALELGRRFILVDNNPEALAVMARRFDGVA 283


>gi|159900577|ref|YP_001546824.1| site-specific DNA-methyltransferase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893616|gb|ABX06696.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 281

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 113/273 (41%), Gaps = 24/273 (8%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--------------NGQLYRPDHSLV 65
            +K+  G++++VL  LPA S DLI+ DPP+N                   ++    H   
Sbjct: 1   MNKLYFGDNLAVLATLPAASYDLIYIDPPFNTGKIQSRTQLRTVRSEQGDRVGFGGHRYS 60

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
                      SF+ + AF    LL   R+LKP G+ +    Y  +     ++  +    
Sbjct: 61  SIKIGERAYGDSFDDFLAFIEPRLLEAYRLLKPQGSFFFHIDYREVHYCKVLIDQIFGRD 120

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD--------ALKAANED 177
                   +        +++   H+T++W +     + YTFNYD        A      +
Sbjct: 121 SFINEIIWAYDYGARSRKKWSTKHDTILWYAK--DPENYTFNYDQIDRIPYMAPGLVGPE 178

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
              R      +   +    N   +  +PTQKP A+L+RI+   + P D +LD F GSG+ 
Sbjct: 179 KAARGKTPTDVWWNTIVSPNGKEKTGYPTQKPLAILNRIVRVHSNPNDQLLDFFAGSGSF 238

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           G  A +  R+F  I+     I++  +R+A  +P
Sbjct: 239 GEAAARNGRNFTLIDQNPQAIEVMRQRLAFAEP 271


>gi|315657003|ref|ZP_07909888.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492395|gb|EFU82001.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 432

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 108/261 (41%), Gaps = 16/261 (6%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG-----QLYRPDHSLVDAVTDS 71
           +++I  G ++ V+  L      SVD I+ DPP+N   +        +R D      V   
Sbjct: 47  ENRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGTDYVQRIRTHHRGDSKRTITVKQY 106

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            D++ +   Y       L   R+ + P GT+++   +H+   +  ++  +          
Sbjct: 107 GDRWQT-ADYIQNLYERLTLLRQFMSPTGTIFLHCDWHSSAALRLVMDEVFGGSNLINEI 165

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDV--QMRSDW 184
             +        R F + H+T+++ +   +   +  +     Y+A  +         +   
Sbjct: 166 VWAYASGGGSRRAFGHKHDTILFYARDRRRYYFDPDAVRVAYNAAISPKRRKLFNPQGMV 225

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
              +        + D    +PTQKP  ++ R + ++  PG +++D F GSG++   A +L
Sbjct: 226 APDVWQIPRPPNHSDTWVGYPTQKPLEVMQRAIDAACPPGGLVMDCFAGSGSTLVAAAQL 285

Query: 245 RRSFIGIEMKQDYIDIATKRI 265
            R F+GIE     + +A +R+
Sbjct: 286 GRRFLGIERNSLGVHLARRRL 306


>gi|241663406|ref|YP_002981766.1| DNA methylase N-4/N-6 domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240865433|gb|ACS63094.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12D]
          Length = 273

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/256 (27%), Positives = 116/256 (45%), Gaps = 27/256 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +  L   SVDL+ ADPPY L  +      D   +             +A
Sbjct: 7   DGIFNEDCITGVGHLADGSVDLVIADPPYGLGKDYG---NDSDKLSG-----------DA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A R  L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIDAVRPKLARNGSLYLFCTWQYAPELFVMLKQR-LTMVNEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
             R+F + H+ + + + S                 T    + K       +   +     
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
               RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+ AV  +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMILASCPPGGLVLDPFLGSGTTAAVCARLGRRF 231

Query: 249 IGIEMKQDYIDIATKR 264
            G E+  DY  +A +R
Sbjct: 232 AGFEINADYCRVARER 247


>gi|228473121|ref|ZP_04057878.1| DNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275703|gb|EEK14480.1| DNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
          Length = 270

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 93/242 (38%), Positives = 139/242 (57%), Gaps = 8/242 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+++ +L +   +  D++FADPPY L   G L   +  +V      WDK       +
Sbjct: 15  LLHGDTMELLPQF-HRKFDMVFADPPYFLSNGG-LTVNNGEIVSVDKGDWDKSKGIAFVN 72

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R V+K   T+W+ G+ HNIF +G +L  L F ILN I W K+NP PNF  
Sbjct: 73  DFNRQWLTLVREVMKEEATIWISGTMHNIFSVGQILTELGFKILNIITWEKTNPPPNFSC 132

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ E +IWA    K   Y FNY+ +K  N + QM+  W  P  +  E+   K    
Sbjct: 133 RYFTHSTEQIIWARKEEKTPHY-FNYELMKQLNGNKQMKDVWRFPAIAPWEKSCGK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP ++L+R++++ST+    ILDPF GS T+G  A  L R F+GI+ +QD+++++ 
Sbjct: 188 -HPTQKPLSVLTRLILASTQTNAWILDPFTGSSTTGIAANLLVRKFVGIDKEQDFLELSK 246

Query: 263 KR 264
           KR
Sbjct: 247 KR 248


>gi|269926576|ref|YP_003323199.1| DNA methylase N-4/N-6 domain protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790236|gb|ACZ42377.1| DNA methylase N-4/N-6 domain protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 276

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 62/260 (23%), Positives = 108/260 (41%), Gaps = 24/260 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G+++S L+KL + SV L++ADPP+         R +   VD      D +   + Y
Sbjct: 3   TVYLGDNLSFLKKLASGSVTLVYADPPF---------RTNRIRVDENGKYNDVWQGIDHY 53

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    R+L  +GT ++     ++  +  ++ ++                    
Sbjct: 54  LEWLAPRLCEIHRILSEDGTFYLHLDRRSVHYVRLLMDDIFGANNFQNEIIWHYTGGGRG 113

Query: 142 GRRFQNAHETLIWASPSPKAKGYT-----FNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            R F + H+ ++    + K K                A   ++ RS          + L 
Sbjct: 114 SRHFPHKHDNILVYHKTRKYKFNVDAVREPYAKTSGYARSGIRARSGKFYSPHPLGKVLD 173

Query: 197 N----------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +                +P+QKPE LL RI+V+S+  GDI+LDPF GSGT+   A KL R
Sbjct: 174 DVWFIPIVNPLSPERTGYPSQKPEELLRRIIVASSDKGDIVLDPFCGSGTTLVAAHKLER 233

Query: 247 SFIGIEMKQDYIDIATKRIA 266
            +IG++   + I I  +R+ 
Sbjct: 234 QWIGMDSSPEAISICIERLK 253


>gi|148993008|ref|ZP_01822602.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP9-BS68]
 gi|169834116|ref|YP_001694863.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225857062|ref|YP_002738573.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           P1031]
 gi|147928209|gb|EDK79226.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP9-BS68]
 gi|168996618|gb|ACA37230.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225725859|gb|ACO21711.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           P1031]
          Length = 396

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 130/309 (42%), Gaps = 34/309 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L  C+RVLK +G+++V         I  +L N+    +       +    +  
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
            +   N H+ + + S S   K  T   +     N D                        
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177

Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
               +     L  + +             +PTQKP  LL +I+  +T   DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK---RTEPRVAFN 291
           GT+   +K L R+++GI++ ++ I+I  +R+ +V    +  L         +TE      
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSDLLNKGIEAYRTKTEEEENIL 297

Query: 292 LLVERGLIQ 300
            L++  ++Q
Sbjct: 298 KLLQAKIVQ 306


>gi|298346628|ref|YP_003719315.1| putative site-specific DNA-methyltransferase [Mobiluncus curtisii
           ATCC 43063]
 gi|298236689|gb|ADI67821.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus curtisii ATCC 43063]
          Length = 291

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 109/278 (39%), Gaps = 35/278 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-----------------------NGQL 57
           + ++ G+++ VLE+LP +S  LI+ DPP+N                           GQ 
Sbjct: 12  NLVVAGDNLPVLEQLPDESFQLIYIDPPFNTGKVQSRQSLKTVRSDVPVVGSRVGFQGQT 71

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           Y      V A  D      SF  Y  F    L    R+L P GTL++   Y  +     +
Sbjct: 72  YETVRGKVTAYND------SFSDYWGFLEPRLEQAWRLLAPTGTLYLHLDYREVHYAKVL 125

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDAL 171
           L  L            +        R++   H+ ++      K   +  +      Y A 
Sbjct: 126 LDALFGRDCFLNEIIWAYDYGGRSKRKWPAKHDNILVYVKDQKQYYFDSDSVDREPYMAP 185

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                +   R      +   +        +  + TQKPE +L RI+ +S++PGD +LD F
Sbjct: 186 GLVTPEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASSRPGDWVLDFF 245

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GSGT+GAVA  L R F+ I+   + I+I   R+    
Sbjct: 246 AGSGTTGAVAGTLERRFVLIDENPEAIEIMRSRLNRAN 283


>gi|300691105|ref|YP_003752100.1| site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum PSI07]
 gi|299078165|emb|CBJ50808.1| Site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum PSI07]
          Length = 270

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/258 (26%), Positives = 115/258 (44%), Gaps = 27/258 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +  L   SVDL+ ADPPY L  +      D   +             EA
Sbjct: 7   DGIFNEDCIAGVGHLADGSVDLVIADPPYGLGKDYG---NDSDKLSG-----------EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YMAWSERWIEAVLPKLARNGSLYLFCTWQYAPELFVMLKRRLQ-MINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
             R+F + H+ + + + S                 T    + K       +   +     
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
               RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+     +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARLGRRF 231

Query: 249 IGIEMKQDYIDIATKRIA 266
            G E+  +Y  +A +R+A
Sbjct: 232 AGFEINAEYCRVARERVA 249


>gi|228470286|ref|ZP_04055190.1| DNA methylase [Porphyromonas uenonis 60-3]
 gi|228308029|gb|EEK16904.1| DNA methylase [Porphyromonas uenonis 60-3]
          Length = 285

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 74/261 (28%), Positives = 118/261 (45%), Gaps = 33/261 (12%)

Query: 21  DKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +KII G+++  L + +   SVDL+FADPPYN+  N               D WD   S E
Sbjct: 7   NKIIHGDALQALSECISDNSVDLVFADPPYNIGKN----------FAGCLDKWD---SDE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           +Y  +  +WL  C + LKP G L+V+ S   +      L+     +    +    +    
Sbjct: 54  SYLRWCYSWLDLCIQKLKPTGALYVMTSTQFMPYFDLYLRERLDILSR--IVWSYDSSGV 111

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWL 185
              R F + +E +++       + YTFN                     N      +  +
Sbjct: 112 QAKRYFGSLYEPILFCVK--DKRQYTFNASDILVEAKTGAKRGLIDYRKNPPQPYSTTKV 169

Query: 186 IPICSGSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                   R+R +    + HPTQKP  LL RI+ +S+  GD++LDPF G+ T+  VA  L
Sbjct: 170 PGNVWEFTRVRYRMPEYENHPTQKPIELLERIIKASSNEGDVVLDPFSGTFTTSYVASLL 229

Query: 245 RRSFIGIEMKQDYIDIATKRI 265
            R  IGIE++++Y+ I  +R+
Sbjct: 230 HRKSIGIELQEEYVKIGLRRL 250


>gi|269838385|ref|YP_003320613.1| DNA methylase N-4/N-6 domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787648|gb|ACZ39791.1| DNA methylase N-4/N-6 domain protein [Sphaerobacter thermophilus
           DSM 20745]
          Length = 307

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 116/279 (41%), Gaps = 34/279 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR------PDHSLVDAVTDS 71
           E+ D I+  ++++VL  LP   V LI+ DPP+N      L R      PD   V     +
Sbjct: 7   EYVDTIVYSDNLAVLRTLPDGCVPLIYIDPPFNTGKTRSLTRLRTTRDPDGDRVGFQGQT 66

Query: 72  WD-------KFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
           +        +F+  F+ Y AF    L+  RRVL PNGTL+V      +  +  +L  +  
Sbjct: 67  YRTLRLGTTRFADVFDDYLAFLEPRLVEARRVLAPNGTLYVHLDPREVHYVKVLLDGIFG 126

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-------- 175
                     +        RR+   H+ ++        + Y FN DA+            
Sbjct: 127 RECFLNEIIWAYDFGGRSTRRWPAKHDNILVYV--ASPRDYVFNVDAIDRIPYMAPGLVG 184

Query: 176 -----EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                        W   I     R         +PTQKP  +L RI+ +S+ PGD++LD 
Sbjct: 185 PEKAARGKLPTDTWWATIVPTKAR-----ERTGYPTQKPLTILRRIIAASSNPGDLVLDF 239

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           F GSGT+G  A++L R F+ ++   + + +  +R A   
Sbjct: 240 FAGSGTTGVAARELGRRFLLVDNNPEALQVMARRFAGEA 278


>gi|209524406|ref|ZP_03272955.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|79835531|gb|ABB52099.1| Mod [Arthrospira platensis]
 gi|209495197|gb|EDZ95503.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 295

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 82/311 (26%), Positives = 136/311 (43%), Gaps = 44/311 (14%)

Query: 18  EWKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + ++ I  G++I +L   + A SV+LIFADPPYN+      +              D+++
Sbjct: 7   DDRNTIFHGDAIQILSSQIAANSVNLIFADPPYNIGKKFSKFH-------------DQWN 53

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E Y  ++  WL  C RVLKPNGTL+V+ S  ++      L+     +    +    + 
Sbjct: 54  SEEDYINWSYQWLDECVRVLKPNGTLYVMTSTQSMPYFDIYLRQKMSILSR--IVWHYDS 111

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGY------------------TFNYDALKAANEDV 178
                 + F + +E ++      K   +                   +        N + 
Sbjct: 112 SGVQAKKYFGSMYEPILHCVKDQKNYIFNSADIKVEAKTGAQRKLIDYRKPVPTQYNSEK 171

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
              + W  P      R R  + E  HP QKPE+LL RI+++ST   D++LDPF G+ T+ 
Sbjct: 172 VPGNVWYFPRV----RYRMAEYEN-HPAQKPESLLERIILASTNTHDLVLDPFAGTFTTA 226

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
           AVAK+L R  + IE +++Y+ I  +R+   Q     +L      +T+    F        
Sbjct: 227 AVAKRLGRISMSIESQEEYLKIGLRRVLGWQEYQGEKLLPPAKNQTKQNTNFPT---NQF 283

Query: 299 IQPGQILTNAQ 309
           IQP   + +A 
Sbjct: 284 IQPS--IFDAD 292


>gi|304389659|ref|ZP_07371619.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327063|gb|EFL94301.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 291

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 110/278 (39%), Gaps = 35/278 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-----------------------NGQL 57
           + ++ G+++ VLE LP +S  LI+ DPP+N                           GQ 
Sbjct: 12  NLVVAGDNLPVLELLPDESFQLIYIDPPFNTGKVQSRQSLKTVRTDVPVAGSRVGFQGQT 71

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           Y      V A  D      SF  Y  F    L    R+L P GTL++   Y  +     +
Sbjct: 72  YETVRGKVTAYND------SFSDYWGFLEPRLEQAWRLLAPTGTLYLHLDYREVHYAKVL 125

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDAL 171
           L  L            +        R++   H+ ++      K   +  +      Y A 
Sbjct: 126 LDALFGRDCFLNEIIWAYDYGGRSKRKWPAKHDNILVYVKDQKQYYFDSDSVDREPYMAP 185

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                +   R      +   +        +  + TQKPE +L RI+ +S++PGD +LD F
Sbjct: 186 GLVTPEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASSRPGDWVLDFF 245

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GSGT+GAVA  L R F+ I+   + I+I  +R++   
Sbjct: 246 AGSGTTGAVAGTLERRFVLIDENPEAIEIMRRRLSRAN 283


>gi|168493334|ref|ZP_02717477.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC3059-06]
 gi|183576799|gb|EDT97327.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC3059-06]
          Length = 392

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L  C+RVLK +G+++V         I  +L N+    +       +    +  
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
            +   N H+ + + S S   K  T   +     N D                        
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177

Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
               +     L  + +             +PTQKP  LL +I+  +T   DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           GT+   +K L R+++GI++ ++ I+I  +R+ +V    +  L 
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSDLLN 280


>gi|15901283|ref|NP_345887.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae TIGR4]
 gi|14972920|gb|AAK75527.1| putative type II DNA modification methyltransferase [Streptococcus
           pneumoniae TIGR4]
          Length = 396

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L  C+RVLK +G+++V         I  +L N+    +       +    +  
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGVDMFQSEIIWNYKRWSNS 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
            +   N H+ + + S S   K  T   +     N D                        
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177

Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
               +     L  + +             +PTQKP  LL +I+  +T   DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           GT+   +K L R+++GI++ ++ I+I  +R+ +V    +  L 
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280


>gi|304389705|ref|ZP_07371664.1| DNA methylase RsrI [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326881|gb|EFL94120.1| DNA methylase RsrI [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 433

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 110/262 (41%), Gaps = 17/262 (6%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG-----QLYRPDHSLVDAVTDS 71
           +++I  G ++ V+  L      SVD I+ DPP+N   +        +R D      V   
Sbjct: 47  ENRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGTDYVQRIRTHHRGDSKRTITVKQY 106

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            D++ +   Y       L   RR L P GT+++   +H+   +  ++  +          
Sbjct: 107 GDRWQT-ADYLQNLYERLTLLRRFLSPTGTIFLHCDWHSSAALRLVMDEVFGGSNLINEI 165

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWL 185
             +        R F + H+T+++ + + +   +  +        A+     ++      +
Sbjct: 166 VWAYASGGGSRRAFGHKHDTILFYARNRRRYYFDPDAVRVAYNAAIAPKRRELFNPQGMV 225

Query: 186 IPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKK 243
            P      R  N     + +PTQKP  ++ R + ++  PG +++D F GSG++    A +
Sbjct: 226 APDVWQISRPPNHSDTWVGYPTQKPLEVMQRAIAAACPPGGLVMDCFAGSGSTLVAAAAQ 285

Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
           L R F+GIE     + +A +R+
Sbjct: 286 LGRRFLGIERNSLGVHLARRRL 307


>gi|148984771|ref|ZP_01818024.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP3-BS71]
 gi|149011671|ref|ZP_01832867.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
           SP19-BS75]
 gi|168483942|ref|ZP_02708894.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC1873-00]
 gi|168486127|ref|ZP_02710635.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC1087-00]
 gi|182684389|ref|YP_001836136.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae CGSP14]
 gi|194398500|ref|YP_002038079.1| type II DNA modification methyltransferase [Streptococcus
           pneumoniae G54]
 gi|221232165|ref|YP_002511318.1| DNA modification methylase [Streptococcus pneumoniae ATCC 700669]
 gi|225859198|ref|YP_002740708.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           70585]
 gi|225860791|ref|YP_002742300.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229942|ref|ZP_06963623.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255682|ref|ZP_06979268.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298502615|ref|YP_003724555.1| type II DNA modification methyltransferase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|303253831|ref|ZP_07339960.1| putative DNA modification methylase [Streptococcus pneumoniae
           BS455]
 gi|303259027|ref|ZP_07345006.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP-BS293]
 gi|303261711|ref|ZP_07347658.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264380|ref|ZP_07350300.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS397]
 gi|303267450|ref|ZP_07353303.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS457]
 gi|303269308|ref|ZP_07355081.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS458]
 gi|307127001|ref|YP_003879032.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           670-6B]
 gi|18699604|gb|AAL78652.1|AF469000_1 XbaI methylase [Streptococcus pneumoniae]
 gi|147764102|gb|EDK71034.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147922793|gb|EDK73909.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP3-BS71]
 gi|172042720|gb|EDT50766.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC1873-00]
 gi|182629723|gb|ACB90671.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae CGSP14]
 gi|183570735|gb|EDT91263.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC1087-00]
 gi|194358167|gb|ACF56615.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae G54]
 gi|220674626|emb|CAR69192.1| putative DNA modification methylase [Streptococcus pneumoniae ATCC
           700669]
 gi|225722056|gb|ACO17910.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           70585]
 gi|225727628|gb|ACO23479.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238210|gb|ADI69341.1| type II DNA modification methyltransferase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301800290|emb|CBW32913.1| putative DNA modification methylase [Streptococcus pneumoniae
           OXC141]
 gi|301802166|emb|CBW34907.1| putative DNA moodification methylase [Streptococcus pneumoniae
           INV200]
 gi|302599204|gb|EFL66221.1| putative DNA modification methylase [Streptococcus pneumoniae
           BS455]
 gi|302637291|gb|EFL67779.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639970|gb|EFL70426.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP-BS293]
 gi|302641138|gb|EFL71512.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS458]
 gi|302643011|gb|EFL73305.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS457]
 gi|302646192|gb|EFL76419.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS397]
 gi|306484063|gb|ADM90932.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           670-6B]
 gi|327389617|gb|EGE87962.1| DNA methylase family protein [Streptococcus pneumoniae GA04375]
 gi|332074753|gb|EGI85227.1| DNA methylase family protein [Streptococcus pneumoniae GA17545]
          Length = 396

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L  C+RVLK +G+++V         I  +L N+    +       +    +  
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
            +   N H+ + + S S   K  T   +     N D                        
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177

Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
               +     L  + +             +PTQKP  LL +I+  +T   DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           GT+   +K L R+++GI++ ++ I+I  +R+ +V    +  L 
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280


>gi|315656957|ref|ZP_07909842.1| adenine specific DNA methylase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492349|gb|EFU81955.1| adenine specific DNA methylase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 291

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 67/278 (24%), Positives = 110/278 (39%), Gaps = 35/278 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-----------------------NGQL 57
           + ++ G+++ VLE+LP +S  LI+ DPP+N                           GQ 
Sbjct: 12  NLVVAGDNLPVLEQLPDESFQLIYIDPPFNTGKVQSRQSLKTVRSDAPVAGSRVGFQGQT 71

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           Y      V A  D      SF  Y  F    L    R+L P GTL++   Y  +     +
Sbjct: 72  YETVRGKVTAYND------SFSDYWGFLEPRLEQAWRLLAPTGTLYLHLDYREVHYAKVL 125

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--- 174
           L  L            +        R++   H+ ++      K   +  +    +     
Sbjct: 126 LDALFGRDCFLNEIIWAYDYGGRSKRKWPAKHDNILVYVKDQKQYYFDSDSVDREPYMVP 185

Query: 175 ---NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                +   R      +   +        +  + TQKPE +L RI+ +S++PGD +LD F
Sbjct: 186 GLVTPEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASSRPGDWVLDFF 245

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GSGT+GAVA  L R F+ I+   + I+I  +R++   
Sbjct: 246 AGSGTTGAVAGTLERRFVLIDENPEAIEIMRRRLSRAN 283


>gi|148997514|ref|ZP_01825119.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP11-BS70]
 gi|168489597|ref|ZP_02713796.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           SP195]
 gi|168575894|ref|ZP_02721809.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           MLV-016]
 gi|307068084|ref|YP_003877050.1| adenine specific DNa methylase Mod [Streptococcus pneumoniae AP200]
 gi|147756569|gb|EDK63610.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP11-BS70]
 gi|183571882|gb|EDT92410.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           SP195]
 gi|183578247|gb|EDT98775.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           MLV-016]
 gi|301794465|emb|CBW36902.1| putative DNA modification methylase [Streptococcus pneumoniae
           INV104]
 gi|306409621|gb|ADM85048.1| Adenine specific DNA methylase Mod [Streptococcus pneumoniae AP200]
 gi|332073737|gb|EGI84216.1| DNA methylase family protein [Streptococcus pneumoniae GA17570]
 gi|332203261|gb|EGJ17329.1| DNA methylase family protein [Streptococcus pneumoniae GA47901]
          Length = 396

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L  C+RVLK +G+++V         I  +L N+    +       +    +  
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
            +   N H+ + + S S   K  T   +     N D                        
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRNGNSKTIYKVDNNGNY 177

Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
               +     L  + +             +PTQKP  LL +I+  +T   DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           GT+   +K L R+++GI++ ++ I+I  +R+ +V    +  L 
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280


>gi|225854874|ref|YP_002736386.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           JJA]
 gi|225723405|gb|ACO19258.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           JJA]
          Length = 405

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L  C+RVLK +G+++V         I  +L N+    +       +    +  
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
            +   N H+ + + S S   K  T   +     N D                        
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177

Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
               +     L  + +             +PTQKP  LL +I+  +T   DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           GT+   +K L R+++GI++ ++ I+I  +R+ +V    +  L 
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280


>gi|315655141|ref|ZP_07908043.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii ATCC
           51333]
 gi|315490622|gb|EFU80245.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii ATCC
           51333]
          Length = 432

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 107/261 (40%), Gaps = 16/261 (6%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG-----QLYRPDHSLVDAVTDS 71
           +++I  G ++ V+  L      SVD I+ DPP+N   +        +R        V   
Sbjct: 47  ENRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGADYVQRIRTHHRGGSKRTITVKQY 106

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            D++ +   Y       L   RR + P GT+++   +H+   +  ++  +          
Sbjct: 107 GDRWHT-ADYLQNLYERLTLLRRFMAPTGTIFLHCDWHSSAALRLVMDEVFGGNNLINEI 165

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDV--QMRSDW 184
             +        R F + H+T+++ +   +   +  +     Y+A  +         +   
Sbjct: 166 VWAYASGGGSRRAFGHKHDTILFYARDRRRYYFDPDAVRVAYNAAISPKRRKLFNPQGMV 225

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
              +        + D    +PTQKP  ++ R + ++  PG +++D F GSG++   A +L
Sbjct: 226 APDVWQIPRPPNHSDTWVGYPTQKPLEVMQRAIDAACPPGGLVMDCFAGSGSTLVAAAQL 285

Query: 245 RRSFIGIEMKQDYIDIATKRI 265
            R F+GIE     + +A +R+
Sbjct: 286 GRRFLGIERNSLGVHLARRRL 306


>gi|94311402|ref|YP_584612.1| DNA methylase N-4/N-6 [Cupriavidus metallidurans CH34]
 gi|93355254|gb|ABF09343.1| DNA methylase N-4/N-6 [Cupriavidus metallidurans CH34]
          Length = 311

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 27/261 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + + +  ++++P  S+DL+ ADPPY L  +      D  L+             +AY
Sbjct: 32  RLYQEDVLEGIKRIPDGSIDLVVADPPYGLGKDYG---NDSDLLSG-----------DAY 77

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+ A    + P GTL++  ++     +  ML+     ++N+I+W +  P     
Sbjct: 78  LEWSERWMDAIVPKIAPRGTLYLFCTWQYSPELFVMLKRRMT-MINEIIWDRRVPSMGGT 136

Query: 142 GRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICS 190
            R+F + H+ + + +                   T    +         +   +      
Sbjct: 137 TRKFSSVHDNIGFFARQRDYFFDLDPVRIPYDAETKKARSRPRFEGKKWLEVGYNPKDLW 196

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              R+  +D E+  HPTQKP  ++ R+++SS  PG I+LDPF GSGT+     +  RSF+
Sbjct: 197 SVPRIHRQDPERADHPTQKPLEIVERMVLSSCPPGGIVLDPFTGSGTTAVACVRHGRSFV 256

Query: 250 GIEMKQDYIDIATKRIASVQP 270
           G EM  +Y  +  +R+ + QP
Sbjct: 257 GFEMNPEYAGLVRERVTAAQP 277


>gi|148990531|ref|ZP_01821666.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP6-BS73]
 gi|147924219|gb|EDK75317.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP6-BS73]
          Length = 325

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L  C+RVLK +G+++V         I  +L N+    +       +    +  
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGVDMFQSEIIWNYKRWSNS 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
            +   N H+ + + S S   K  T   +     N D                        
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177

Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
               +     L  + +             +PTQKP  LL +I+  +T   DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           GT+   +K L R+++GI++ ++ I+I  +R+ +V    +  L 
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280


>gi|168491335|ref|ZP_02715478.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574390|gb|EDT94918.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC0288-04]
          Length = 392

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L  C+RVLK +G+++V         I  +L N+    +       +    +  
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
            +   N H+ + + S S   K  T   +     N D                        
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177

Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
               +     L  + +             +PTQKP  LL +I+  +T   D++LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDVVLDPFCGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           GT+   +K L R+++GI++ ++ I+I  +R+ +V    +  L 
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280


>gi|15903330|ref|NP_358880.1| type II DNA modification (methyltransferase [Streptococcus
           pneumoniae R6]
 gi|116516980|ref|YP_816726.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae D39]
 gi|15458929|gb|AAL00091.1| DNA modification methyltransferase [Streptococcus pneumoniae R6]
 gi|116077556|gb|ABJ55276.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae D39]
          Length = 392

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L  C+RVLK +G+++V         I  +L N+    +       +    +  
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
            +   N H+ + + S S   K  T   +     N D                        
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177

Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
               +     L  + +             +PTQKP  LL +I+  +T   DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           GT+   +K L R+++GI++ ++ I+I  +R+ +V    +  L 
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280


>gi|149007299|ref|ZP_01830957.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP18-BS74]
 gi|237650442|ref|ZP_04524694.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CCRI 1974]
 gi|237821039|ref|ZP_04596884.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|147761103|gb|EDK68071.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP18-BS74]
 gi|332200872|gb|EGJ14944.1| DNA methylase family protein [Streptococcus pneumoniae GA41317]
 gi|332201882|gb|EGJ15952.1| DNA methylase family protein [Streptococcus pneumoniae GA47368]
          Length = 325

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L  C+RVLK +G+++V         I  +L N+    +       +    +  
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
            +   N H+ + + S S   K  T   +     N D                        
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177

Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
               +     L  + +             +PTQKP  LL +I+  +T   DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           GT+   +K L R+++GI++ ++ I+I  +R+ +V    +  L 
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280


>gi|147669683|ref|YP_001214501.1| DNA methylase N-4/N-6 domain-containing protein [Dehalococcoides
           sp. BAV1]
 gi|146270631|gb|ABQ17623.1| DNA methylase N-4/N-6 domain protein [Dehalococcoides sp. BAV1]
          Length = 733

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 152/434 (35%), Gaps = 92/434 (21%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK----------SVDLIFADPPYNLQ 52
           Q +  + +     +  W +K+I G++  +L  L              + LI+ DPP+++ 
Sbjct: 73  QPDMFSFDSRGRQLKGWTNKLIWGDNKLILSSLKNGPLREEIERQGGIKLIYIDPPFDVG 132

Query: 53  LNGQL----------YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
            +  +           +P+     A  D+W K +   ++ +     L+  R +L  +G++
Sbjct: 133 ADFSMDIEIGEDTFTKKPNVLEEIAYRDTWGKGTD--SFISMIYERLVLMRDLLAKDGSI 190

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS---- 158
           +V   +     +  +L  +    +N  +      M +  G+ F  +HET++         
Sbjct: 191 YVHCDWRVNSYLKLVLDEVFSGFVNTEIIWICGLMGS--GKVFPKSHETILLYRKQNSIF 248

Query: 159 -------------------PKAKGYTFNYDALKAANEDVQMRSDWL-------------- 185
                               +   YT   ++    N      S  +              
Sbjct: 249 NMPLRLGLSPRITNALQKDNEGWFYTRGQESSGGKNWLKSYISKEVSFSKEKAIEEANQN 308

Query: 186 -----IPICSGSERLRN-------------KDGEKLHPTQKPEALLSRILVSSTKPGDII 227
                  +  G + L                  +  +PTQKPEALL RI+ +S+  GD++
Sbjct: 309 RPQPAWDVWIGKKELAKAFNDFPVGTYAYTDQEKVGYPTQKPEALLERIIKASSNEGDLV 368

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            D F GSGT+ AVA+KL R +I  ++ +  +    KR+  VQ     E       R    
Sbjct: 369 ADFFCGSGTTAAVAEKLGRKWIATDLGKFAVHTTRKRMIGVQRQLKAE---NKDFRAFEM 425

Query: 288 VAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGW 347
           +       +  +     L + +            L        I+ +  +   +E   G+
Sbjct: 426 LNMGKYERQHYVGVNPNLRDVEKQK--------QLEQKEADF-IN-LILRAYKAEKVEGF 475

Query: 348 NFWYFEKLGELHSI 361
             +  +K G L +I
Sbjct: 476 KTFIGKKTGRLVAI 489


>gi|163846243|ref|YP_001634287.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222523998|ref|YP_002568468.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163667532|gb|ABY33898.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447877|gb|ACM52143.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 337

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 117/271 (43%), Gaps = 43/271 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G++I+ L  L  +SVD+IFADPPYN++                   WD F S  AY 
Sbjct: 64  IWIGDAIAWLRSLETESVDMIFADPPYNIRKA----------------EWDSFESQAAYV 107

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            ++  W+    RVLKP GTL++ G    I  +              I   K+       G
Sbjct: 108 EWSLEWISEAARVLKPTGTLYICGFSEIIADLKLPASRFFKGCRWLIWHYKNKA---NLG 164

Query: 143 RRFQNAHETLIWASPS---------------PKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           + +  +HE+++                         Y  +  A  +     + R     P
Sbjct: 165 KDWGRSHESILHFRKDRQFTFNIDDIRIPYGHHTLKYPDHPQAETSQYSRGRRRQAVWRP 224

Query: 188 ICSGSE---------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
              G++                +  HPTQKPE LL +++++S+  GD+I+DPF GSGT+ 
Sbjct: 225 HPRGAKPRDVLEIPTTCNGMHEKTPHPTQKPEELLRKLVLASSNVGDVIVDPFLGSGTTA 284

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            VA++L+R + G ++  +Y   A +RI  V+
Sbjct: 285 VVAEQLKRRWKGCDISLEYCQWAVQRIELVE 315


>gi|315655187|ref|ZP_07908088.1| adenine specific DNA methylase [Mobiluncus curtisii ATCC 51333]
 gi|315490442|gb|EFU80066.1| adenine specific DNA methylase [Mobiluncus curtisii ATCC 51333]
          Length = 291

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 113/289 (39%), Gaps = 39/289 (13%)

Query: 14  NSIFEWK----DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------------- 53
            SI  W     + ++ G+++ VLE+LP +S  LI+ DPP+N                   
Sbjct: 1   MSINSWNSTGPNLVVAGDNLPVLEQLPDESFQLIYIDPPFNTGKVQSRQSLKTVRTDAPV 60

Query: 54  -------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
                   GQ Y      V A  D      SF  Y  F    L    R+L P GTL++  
Sbjct: 61  TGSRVGFQGQTYETVRGKVTAYND------SFSDYWGFLEPRLEQVWRLLAPTGTLYLHL 114

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY-- 164
            Y  +     +L  L            +        R++   H+ ++      +   +  
Sbjct: 115 DYREVHYAKVLLDALFGRDCFLNEIIWAYDYGGRSKRKWPAKHDNILVYVKDQERYYFDS 174

Query: 165 ----TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                  Y A      +   R      +   +        +  + TQKPE +L RI+ +S
Sbjct: 175 ESVDREPYMAPGLVTPEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQAS 234

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           ++PGD +LD F GSGT+GAVA  L R F+ I+   + I+I  +R++   
Sbjct: 235 SRPGDWVLDFFAGSGTTGAVAGTLERRFVLIDENPEAIEIMRRRLSRAN 283


>gi|240047330|ref|YP_002960718.1| Modification methylase HpaI [Mycoplasma conjunctivae HRC/581]
 gi|239984902|emb|CAT04895.1| Modification methylase HpaI [Mycoplasma conjunctivae]
          Length = 299

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 128/283 (45%), Gaps = 24/283 (8%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII GN+I  L+K+ +KS++LI  DPPYNL  +    + +                FE Y
Sbjct: 6   KIICGNAIEELKKIESKSINLIVTDPPYNLNKDYGNNKDNLK--------------FEEY 51

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F+R WL   +R+LK +GT+++      I  I ++L+       N  +          +
Sbjct: 52  LEFSRQWLTEAKRILKDDGTIYIFMGTRYISYIYSILEKELNMHFNSWITWFYTQGIG-K 110

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN---- 197
            + F   H+ ++  +       +TFN D ++   +  +  ++          +  +    
Sbjct: 111 TKGFSPRHDDILMFTKHK--SKFTFNLDDIRVPQKFYRSVNNMRGANPGNVWQFSHMHYC 168

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               K HPTQKPE L  R+++ S+   D +LDPF GSGT   V ++  R  IGI++ ++Y
Sbjct: 169 NKNRKKHPTQKPEGLYERMILVSSNENDTVLDPFVGSGTMLRVCQQTNRRGIGIDINEEY 228

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           + +  +R+       + E   +   +  P    + ++ +  I+
Sbjct: 229 VRMCKERLEEDFTGFDSEDERI---KRVPNDLNDPIIRKEYIE 268


>gi|332073769|gb|EGI84247.1| DNA methylase family protein [Streptococcus pneumoniae GA41301]
          Length = 325

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L  C+RVLK +G+++V         I  +L N+    +       +    +  
Sbjct: 58  KEFLSIRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
            +   N H+ + + S S   K  T   +     N D                        
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRNGNSKTIYKVDNNGDY 177

Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
               +     L  + +             +PTQKP  LL +I+  +T   DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           GT+   +K L R+++GI++ ++ I+I  +R+ +V    +  L 
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280


>gi|312869218|ref|ZP_07729390.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus oris PB013-T2-3]
 gi|311095239|gb|EFQ53511.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus oris PB013-T2-3]
          Length = 256

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/247 (34%), Positives = 133/247 (53%), Gaps = 9/247 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + + ++ + ++++P  +VD+I ADPPY L  +G         V      WDK  S +  +
Sbjct: 11  LYQDDAFNFMKRIPNNAVDVIVADPPYFLSNDG-FSNSGGKFVSVNKGKWDKLPS-KDIE 68

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F    L   +R+L  NGT W+ GS HNI+ IG +L   +F ILN+I W+KSNP PN   
Sbjct: 69  KFYAEMLSQFQRILNKNGTAWIFGSMHNIYVIGYLLNRYDFKILNNITWQKSNPAPNLSR 128

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++W     K     FNYD ++  N + QM+  W     +     +++    
Sbjct: 129 RMFTHSTETILWIKK--KDGKQFFNYDLMRKLNGNKQMKDVWTTATIN-----KSEKRFG 181

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP +++ RI+ +ST  G I+LDPF G+GT+    K      +G++    Y++IA 
Sbjct: 182 NHPTQKPLSIIMRIIKASTTDGMIVLDPFIGAGTTAVAGKLCGVKVVGVDNSAGYLNIAV 241

Query: 263 KRIASVQ 269
           +R+   Q
Sbjct: 242 QRLKDYQ 248


>gi|149019387|ref|ZP_01834749.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931257|gb|EDK82236.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
           SP23-BS72]
          Length = 332

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L  C+RVLK +G+++V         I  +L N+    +       +    +  
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
            +   N H+ + + S S   K  T   +     N D                        
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177

Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
               +     L  + +             +PTQKP  LL +I+  +T   DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           GT+   +K L R+++GI++ ++ I+I  +R+ +V    +  L 
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280


>gi|149002824|ref|ZP_01827750.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP14-BS69]
 gi|147759118|gb|EDK66112.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP14-BS69]
          Length = 325

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L  C+RVLK +G+++V         I  +L N+    +       +    +  
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
            +   N H+ + + S S   K  T   +     N D                        
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177

Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
               +     L  + +             +PTQKP  LL +I+  +T   DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           GT+   +K L R+++GI++ ++ I+I  +R+ +V    +  L 
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280


>gi|87306976|ref|ZP_01089122.1| adenine-specific methyltransferase [Blastopirellula marina DSM
           3645]
 gi|87290349|gb|EAQ82237.1| adenine-specific methyltransferase [Blastopirellula marina DSM
           3645]
          Length = 309

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/303 (26%), Positives = 115/303 (37%), Gaps = 43/303 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            DK+   + I  + KLP  SVDL+FADPP+N+     +Y              D   S +
Sbjct: 6   LDKLKNVDCIQGMSKLPDGSVDLVFADPPFNIGFKYDVY--------------DDRRSAD 51

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            Y  ++RAW+    RVLK +G+ W+ IG            ++L     N +VW  +  M 
Sbjct: 52  EYLEWSRAWMEQVARVLKSDGSFWLAIGDDFAAELKVLATRDLGMHCRNWVVWYYTFGMH 111

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFN-----------------------YDALKAAN 175
                 F  +H  L +    P+   +                           D      
Sbjct: 112 CKAK--FTRSHTHLFYFVKDPENFTFNDMSVRVPSARMLVYGDRRANPKGRLPDDTWVLR 169

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFG 233
                 S           R+     E+   H  Q PE LL RI+  S+  G+ +LDPF G
Sbjct: 170 PQDIPESFQAEEDTWHFPRVAGTFKERAGFHGCQMPEQLLGRIIKVSSSEGETVLDPFAG 229

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           SG++  VAKKL R  +G EM  +Y   A  RI  VQ    +  +      + P  A    
Sbjct: 230 SGSTLVVAKKLGRRHLGFEMSPEYAAAAQARIDEVQSGDPLTGSPEPSM-SAPSTANGRH 288

Query: 294 VER 296
           V+ 
Sbjct: 289 VKD 291


>gi|254304047|ref|ZP_04971405.1| site-specific DNA-methyltransferase (adenine-specific)
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324239|gb|EDK89489.1| site-specific DNA-methyltransferase (adenine-specific)
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 297

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 129/305 (42%), Gaps = 25/305 (8%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           K      EN + +    +  I GN + +L+++   SVDLIFADPPY +  +         
Sbjct: 2   KEFFKNIENYSYVSNDNNIAILGNCLDILKEIKDNSVDLIFADPPYGIGKDFG------- 54

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
                 +  D F +   Y  + + W+  C RVLK +GT++ + S   +  +   + +  F
Sbjct: 55  ------NKTDFFKNKYEYFEWAKKWIDECMRVLKKDGTMYFMTSTQFMSILDNYVDDKYF 108

Query: 124 WILNDIVWRKSNPMPNFRGRRFQN------AHETLIWASPSPKAKGYTFNYDALKAANED 177
            I   +    S+ +                 H   +    + +         + +   + 
Sbjct: 109 IISRIVWCYDSSGVQAKSKFGSLYEPILMITHNDKVKYKFNYEDIMVEAITGSKRNLIDY 168

Query: 178 V-----QMRSDWLIPICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                    +  +        R+R +  E + HPTQKPE LL RI+++S+  GD++LDPF
Sbjct: 169 RKKIPAPYSNLKVPGNVWTFNRVRFRMEEYENHPTQKPEELLMRIILASSNKGDVVLDPF 228

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
            GS T+  VA KL R  IGIE+  +Y  I  +R    +   N +L     K+T  +   +
Sbjct: 229 SGSFTTSNVALKLDRKAIGIEINPEYFKIGIRRTKLSEYFENEKLEKQKIKKTNNKSKKD 288

Query: 292 LLVER 296
            +V+ 
Sbjct: 289 HVVKN 293


>gi|320159894|ref|YP_004173118.1| methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319993747|dbj|BAJ62518.1| methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 391

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 114/277 (41%), Gaps = 27/277 (9%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
           +Q N+ +   NQ    E  ++I  G+S+ VL+K+P  S+DLIF  PPYN  L  +  R D
Sbjct: 130 AQDNNFSKISNQ-LPPEMTNQIFCGDSLEVLKKIPDNSIDLIFTSPPYNFGLEYE--RQD 186

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGT 116
            +        WD       Y     A    C RVLK  G + V        Y     + +
Sbjct: 187 DAH------KWD------LYFEKLFAIFDECIRVLKFGGRIAVNIQPLFSDYIPSHHLIS 234

Query: 117 MLQNLNFWILNDIVWRKSN---PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
                   I    +  + N         G     ++  L +     +         +   
Sbjct: 235 NFFISRRMIWKGEILWEKNNYNCKYTAWGSWKSPSNPYLKYTWEFIEIFAKGTLKKSGDP 294

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPF 231
            N D+   SD           +  +   K   HP   PE L  R++   +  GDI+LDPF
Sbjct: 295 KNADI--TSDEFKEWVVAKWSIAPERKMKEFGHPAMFPEKLAERVIKLFSFVGDIVLDPF 352

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            G GT+ AVA+KL R FIGI++ Q+Y DIA KR+ + 
Sbjct: 353 NGVGTTTAVAQKLGRKFIGIDISQEYCDIAQKRLKNT 389


>gi|319410295|emb|CBY90637.1| putative type II restriction methyltransferase [Neisseria
           meningitidis WUE 2594]
          Length = 285

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 132/298 (44%), Gaps = 37/298 (12%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
               I  N+NS       +I G+ + VL+ LP+ SVDLIFADPPY +  +          
Sbjct: 2   KKFEIQFNKNS------TVILGDCLEVLKTLPSSSVDLIFADPPYGIGKDFG-------- 47

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                ++ D F+    Y  +  +W+  C RVLK NGT++++ S   +  +   +    F 
Sbjct: 48  -----NNKDFFADAYQYLDWCASWIDECMRVLKDNGTMYLMSSVQYMPILDRYVDEKYFI 102

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA-------------- 170
           I  + +    +        +F + +E ++  +    +  YTFN +               
Sbjct: 103 I--NRIVWSYDSSGVQAKNKFGSTYEPILMFTHHKNS-KYTFNSEDILIEAKTGAERKLI 159

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                      +  +        R+R K D  + HPTQKPE LL RI+++S+  GD ILD
Sbjct: 160 DYRKTPPQPYNAKKIPSNVWEFNRVRYKMDEYENHPTQKPEKLLERIILASSNKGDTILD 219

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           PF GS T+ +VA +L+R  IGIE+  DY  I  +R           LT    ++T  +
Sbjct: 220 PFSGSFTTSSVAVRLKRKAIGIEINPDYFKIGIRRTHISNEYNGEFLTKNKMRKTSNK 277


>gi|255066897|ref|ZP_05318752.1| DNA (cytosine-5-)-methyltransferase [Neisseria sicca ATCC 29256]
 gi|255048972|gb|EET44436.1| DNA (cytosine-5-)-methyltransferase [Neisseria sicca ATCC 29256]
          Length = 285

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 28/279 (10%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
                KI   + +  L  +   SVDLIFADPPYN+                  DSW    
Sbjct: 5   ENSMTKIYLADCLDALNDIQDNSVDLIFADPPYNIGK----------KFSQFKDSW---K 51

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + + Y  +   WL  C   LK NG+L+V+ S  ++  I   L+     +   I    S+ 
Sbjct: 52  TEKEYIEWCYKWLSLCLNKLKDNGSLYVMASTQSMPYIDIWLRERMTILSRIIWHYDSSG 111

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +     + + + +E +++A  + K+  +  +   ++A     +   D+   I +  +  +
Sbjct: 112 V--QAKKYYGSLYEPILFAVKNNKSYTFNSSDIEIEAKTGAKRKLIDYRKEIPTPYKTTK 169

Query: 197 -------------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                          +  + HP+QKPEALL RI+ +ST  GD++LDPF G+ ++ AVA+K
Sbjct: 170 VPGNTWYFPRVRYRMEEYENHPSQKPEALLERIIRASTNEGDLVLDPFGGTFSTSAVAQK 229

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           L R  I IE +++Y+ I  +R+         +L      
Sbjct: 230 LNRKSISIEFQEEYLKIGLRRLGIATEYRGEKLCNTDKN 268


>gi|126175812|ref|YP_001051961.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella baltica
           OS155]
 gi|125999017|gb|ABN63092.1| DNA methylase N-4/N-6 domain protein [Shewanella baltica OS155]
          Length = 296

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 118/291 (40%), Gaps = 53/291 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI  G+S++ L+ LP  S+D I   PPY  Q +             +       S  E 
Sbjct: 8   NKIFTGDSLASLKALPKNSIDCIVTSPPYYGQRDY-----------GMDGQIGNESKLEE 56

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYH--------NIFRIGTMLQNLNFWILNDIVWR 132
           Y          C+RVLK +G+LW+               +R+   LQ+  + + NDI+W 
Sbjct: 57  YIENLVNIFNECKRVLKDSGSLWLNLGDKYNKGNLMGMPWRVALALQDEGWILRNDIIWH 116

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--YDALKAANEDVQMRSDWLIPICS 190
           K N MP+    R    HE + + +   K   Y  +   +  K  +ED +M+        +
Sbjct: 117 KPNAMPHSAKNRLTTDHEYIFFFTKKAKDYYYDQDAIREEHKTFSEDSKMKGGRNHFGKN 176

Query: 191 GSERLRNKDG--------------------------------EKLHPTQKPEALLSRILV 218
           G    + K+                                    H    PE L+   ++
Sbjct: 177 GGTPEKGKNSGNSNLHDGRWDQAFHPNGRNKRTVWNVPLSKFRGAHFAVFPERLIEPCIL 236

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +      I+LDPFFG+GT+G VA +  R ++G+E+  +Y +IA  R+ +VQ
Sbjct: 237 AGCPKNGIVLDPFFGAGTTGFVAAQQGRKYVGLELNPEYAEIAENRLKTVQ 287


>gi|22299025|ref|NP_682272.1| adenine specific DNA methylase [Thermosynechococcus elongatus BP-1]
 gi|22295207|dbj|BAC09034.1| Adenine specific DNA methylase [Thermosynechococcus elongatus BP-1]
          Length = 385

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 122/308 (39%), Gaps = 45/308 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN----------GQLYRPDHS 63
            ++++ +I G++  V+  L       +DLI+ DPP+++  +          G+  + + S
Sbjct: 79  DDFRNMLIWGDNKLVMAALLEQFRGKIDLIYIDPPFDVGADFTMQVQIGEEGEAVQKEQS 138

Query: 64  LVDA--VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
           +++A    D+W K +   +Y       L   R +L   G+++V   +     +  +L + 
Sbjct: 139 ILEAVAYRDTWGKGTD--SYLHMMYERLTLMRELLSERGSIYVHCDWRMNAFLRQVLDDI 196

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS---------PKAKGYT------ 165
                  + +              F   H+ ++  + S          K+   T      
Sbjct: 197 FGRDRFLNHIIWAYKTGGIPENVGFSKKHDDILIYTKSDTPVFNQLLQKSYVPTLPEPTT 256

Query: 166 -----------FNYDALKAANEDVQMRSDWLIPICSGSERL-RNKDGEKLHPTQKPEALL 213
                         +         + R+  +  +    + + RN        TQKPEALL
Sbjct: 257 ISGKQLGVQRDEVCELCGVGRPGQKYRNVIMRDVWDDIQSIFRNDQQTTGFDTQKPEALL 316

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            RI+ +S+  GD++ D F GSGT+ AVA+KL R +IG+++ +  I    KR+  VQ   +
Sbjct: 317 ERIIKASSNEGDLVADFFCGSGTTLAVAEKLGRRWIGVDLGRYAIHTTRKRLIQVQRELH 376

Query: 274 IELTVLTG 281
                   
Sbjct: 377 AADQPYRS 384


>gi|257076824|ref|ZP_05571185.1| hypothetical protein Faci_07171 [Ferroplasma acidarmanus fer1]
          Length = 619

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 110/278 (39%), Gaps = 32/278 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLPA----KSVDLIFADPPYNLQLN--GQLYRPDHSLVD---- 66
            +WK+K+I G++  V+  L        ++LI+ DPP+    +        D + V+    
Sbjct: 65  IDWKNKLIWGDNKLVMSSLLKQGWAGKINLIYIDPPFYTGADFSYTTQVNDDTEVEKEPS 124

Query: 67  -----AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                A  D+W       +Y  +    L   R +L  NG++++   +     +  +   +
Sbjct: 125 VIEQRAYRDTW--SGGISSYLKYMYERLSIMRDLLADNGSIYIHLDWRVSHYVKIICDEI 182

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK--------------GYTFN 167
                   +              +   H+T+++   +  +                +  +
Sbjct: 183 FGINFMADI-VWHYHTGGVSKLNWGRKHDTILFYVKNKDSDFTFNLIKEKRYYEKPFFNS 241

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
            +  +               +      L        +PTQKPEALL R++ +S+  GDI+
Sbjct: 242 TEGYQTDENGKIYVMAHPDDVWDIPAVLNVSSQFIGYPTQKPEALLERVIKASSNKGDIV 301

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            D F GSGT+ AVA+KL R +IG ++ +  I ++ KR+
Sbjct: 302 ADFFCGSGTTLAVAEKLGRRWIGSDLSKYAIQVSRKRL 339


>gi|73541991|ref|YP_296511.1| DNA methylase N-4/N-6 [Ralstonia eutropha JMP134]
 gi|72119404|gb|AAZ61667.1| DNA methylase N-4/N-6 [Ralstonia eutropha JMP134]
          Length = 304

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 27/250 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + +    + +LP  SVDL+ ADPPY L  +      D  L+             +AY
Sbjct: 30  QLFQEDMFEGIARLPDGSVDLVVADPPYGLGKDYG---NDSDLLSG-----------DAY 75

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+ A    L P GTL++  ++     +  ML+     ++N+I+W +  P     
Sbjct: 76  LEWSERWMDAVCPKLAPKGTLYLFCTWQYSPELFVMLKRR-LTMINEIIWDRRVPSMGGT 134

Query: 142 GRRFQNAHETLIWASPSPKAK-----------GYTFNYDALKAANEDVQMRSDWLIPICS 190
            R++ + H+ + + + +                 T    +         +   +      
Sbjct: 135 TRKYSSVHDNIGFFARARDYYFDLDPVRIPYDPETKKARSRPRFEGKKWLEMGYNPKDLW 194

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              R+  +D E+  HPTQKP  ++ R+++SS  PG ++LDPF GSGT+     +  R F 
Sbjct: 195 SISRIHRQDPERANHPTQKPLEIVERMVLSSCPPGGLVLDPFAGSGTTAVACLRHGRRFA 254

Query: 250 GIEMKQDYID 259
           G E+  +Y++
Sbjct: 255 GFEINPEYVE 264


>gi|331703183|ref|YP_004399870.1| modification methylase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801738|emb|CBW53891.1| modification methylase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 400

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 114/313 (36%), Gaps = 31/313 (9%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           + +  I    +++   + +  L++L   S+DL++ DPP+  Q    L    +       D
Sbjct: 5   QKKGKIMIKLNQVYNIDCLDGLKQLKDNSIDLVYLDPPFFTQKAHFLVDKTNKKY-FFND 63

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            W      + Y  F +  L+  +RVLK  G+++V         I  +L  +   I     
Sbjct: 64  IW---KDLKEYQEFLKIRLIEIKRVLKSTGSVFVHCDKTANHIIRVLLDEVFGSINFRSE 120

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---SDWLIP 187
                   +   +   ++H+ +   S +   K      D     N D  ++    D    
Sbjct: 121 IIWVYKRWSNSKKGLLDSHQNIYHYSKTNDFKFNVIYTDYSLTTNIDQILQLRVKDKNNK 180

Query: 188 ICSGSERLRNK------------------------DGEKLHPTQKPEALLSRILVSSTKP 223
                ++  N                              +PTQKP  LL RI+   T  
Sbjct: 181 TVYKKDKNNNIVFSDLKKGVPLSDVWNIPFLNPKAKERASYPTQKPIELLERIISLVTNE 240

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            D++LDPF GSGTS   +K L R+FIG +   D IDI  +R+ +     +  L     K 
Sbjct: 241 NDVVLDPFVGSGTSVVASKLLNRNFIGFDNNIDAIDITNQRLKNPIKSESYLLKNGIDKY 300

Query: 284 TEPRVAFNLLVER 296
                    ++ R
Sbjct: 301 DTKTKQQKQILSR 313


>gi|115358100|ref|YP_775238.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115283388|gb|ABI88904.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria AMMD]
          Length = 283

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 30/259 (11%)

Query: 28  SISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           +   +    +LP  S+DLI ADPPY L  +               +  DK  S + + A+
Sbjct: 37  NRDFMTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDDFLAW 82

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
           TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P      RR
Sbjct: 83  TREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLKTQ-LTMVNEIIWDRRVPSMGGTTRR 141

Query: 145 FQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           F + H+ + + +                   T    + K       +   +         
Sbjct: 142 FTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVS 201

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E
Sbjct: 202 RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYE 261

Query: 253 MKQDYIDIATKRIASVQPL 271
           + + Y  IA +R+ ++   
Sbjct: 262 INESYCAIAHERVNALAAQ 280


>gi|172062886|ref|YP_001810537.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171995403|gb|ACB66321.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 283

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 113/254 (44%), Gaps = 30/254 (11%)

Query: 28  SISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           +   +    +LP  S+DLI ADPPY L  +               +  DK  S + + A+
Sbjct: 37  NRDFMTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDDFLAW 82

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
           TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P      RR
Sbjct: 83  TREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLKTQ-LTMVNEIIWDRRVPSMGGTTRR 141

Query: 145 FQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           F + H+ + + +                   T    + K       +   +         
Sbjct: 142 FTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVS 201

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E
Sbjct: 202 RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYE 261

Query: 253 MKQDYIDIATKRIA 266
           + + Y  IA +R+ 
Sbjct: 262 INESYCAIAHERVN 275


>gi|328954101|ref|YP_004371435.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454425|gb|AEB10254.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 616

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 141/390 (36%), Gaps = 59/390 (15%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA------ 67
            ++++ +I G++   L  L       +DLI+ DPP+++  +  +        +A      
Sbjct: 74  DDFRNLLIWGDNKLALAALLEQFRGKIDLIYIDPPFDVGADFTMQVQLGGEGEALQKEQS 133

Query: 68  ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                   D+W K +   +Y       L+  + +L  +G ++V   +     I  +L ++
Sbjct: 134 ILEAVAYRDTWGKGTD--SYLHMMYERLVLMKDLLSESGNIFVHCDWRVNSYIRLLLDDI 191

Query: 122 NFWILNDIVWRKSNP-MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-------- 172
                +          M +   R F N H+T+ W    P                     
Sbjct: 192 LSGDNHQNELIWIYSRMASKNQRNFNNTHQTIFWYRKGPGFTFNVDQVRTEYAESSKKRA 251

Query: 173 -AANEDVQMRSDWLIPICSGSERLRNKDG--------EKLHPTQKPEALLSRILVSSTKP 223
             A + V         +C   E+ +  D            + T+KPE LL  I+ +++  
Sbjct: 252 GYAKKGVGSGLLKEGSVCELHEKGKFPDDWMSIPFERNATYQTEKPENLLDVIIKAASNE 311

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE-------- 275
           GD++ D F GSGT+ AVA+KL R +IG+++ +  I ++ KR+  VQ   +          
Sbjct: 312 GDLVADFFCGSGTTMAVAEKLGRRWIGVDLGRYAIHVSRKRLIQVQRELHTAGKPYRSFD 371

Query: 276 -------------LTVLTGKRTEPRVAFNLLVERGLI--QPGQILTNAQGNISATVCADG 320
                        L  L G  +E R       +   +   P  +L   +      V    
Sbjct: 372 VYNLGRYERQWWQLDRLKGADSEHRRLVLQFYQAAPLDNPPHPLLHGKKHGAFVHVDQID 431

Query: 321 TLISGTELGSIHRVGAKVSGSE-TCNGWNF 349
           ++ +  EL +         G E  C  W F
Sbjct: 432 SIFAFDELKTAAEAARSAGGRELHCLAWEF 461


>gi|330820900|ref|YP_004349762.1| DNA modification methylase [Burkholderia gladioli BSR3]
 gi|327372895|gb|AEA64250.1| DNA modification methylase [Burkholderia gladioli BSR3]
          Length = 286

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 118/259 (45%), Gaps = 27/259 (10%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + ++    LP  S+DLI ADPPY L  +      D   +             +A+ A+TR
Sbjct: 42  DFLTDAASLPDASIDLIVADPPYGLGKDYG---NDSDKLQG-----------DAHLAWTR 87

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
            WL      LKP+G+L+V  ++     I + L+     ++N+I+W +  P      RRF 
Sbjct: 88  QWLELAIPKLKPSGSLYVFCTWQYAPEIFSFLKTR-LTMINEIIWDRRVPSMGGTTRRFT 146

Query: 147 NAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           + H+ + + + S                 T    + K       +   +         RL
Sbjct: 147 SVHDNIGFFAVSKGYYFDLDPVRIPYDAETKKARSRKLFEGSKWLEMGYNPKDVWSVSRL 206

Query: 196 RNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             +  E++ HPTQKP  L+ R+++SS  PG ++LDPF GSGT+   + +  R FIG E+ 
Sbjct: 207 HRQHAERVDHPTQKPLELVERMVLSSCPPGGVVLDPFMGSGTTAVASARHGRRFIGYEIN 266

Query: 255 QDYIDIATKRIASVQPLGN 273
           + Y  IA +R+ ++    +
Sbjct: 267 ESYCAIARERVTALAAPAD 285


>gi|283457686|ref|YP_003362271.1| adenine specific DNA methylase Mod [Rothia mucilaginosa DY-18]
 gi|283133686|dbj|BAI64451.1| adenine specific DNA methylase Mod [Rothia mucilaginosa DY-18]
          Length = 423

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 110/280 (39%), Gaps = 20/280 (7%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY--------RPDHSLVDAVTDSW- 72
            +++ +++  L +LP  +  +I+ DPP+N                + D +     + S  
Sbjct: 33  LLVQADNLEYLRELPDGAFTVIYIDPPFNTGKKQTRRTLSAEASEKGDRTGFKGKSYSST 92

Query: 73  -----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
                    SFE Y AF    +    R+L  +GTL++   +  +  +  M   +      
Sbjct: 93  LQTLASYNDSFEDYWAFLAPRIEQAHRLLAQDGTLYLHLDWREVHYVKIMCDMIFGRENF 152

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQMR 181
                 +        RR+   H+ ++  +   ++  +         Y A     E+   R
Sbjct: 153 INELIWAYDYGAKSTRRWPTKHDNILVYAKDHRSYYFNTAEVDREPYMAPGLVTEEKASR 212

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                 +   +        +  +PTQKP  LL R++ +S++PGD +LD F GSG++GA A
Sbjct: 213 GKLPTDVWWHTIVSPTGKEKTGYPTQKPTGLLRRMIAASSRPGDWVLDFFAGSGSTGAAA 272

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
            +L R F+ ++     I++  KR+            V  G
Sbjct: 273 AQLGRKFVCVDQNPPAIEVMAKRLGVDPVSFAEYRGVPRG 312


>gi|86169484|gb|ABC86981.1| MseI methylase [Micrococcus sp. NEB 446]
          Length = 300

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 105/281 (37%), Gaps = 20/281 (7%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN------GQLYRPDHSLVDAVTDSWDK 74
           D I++ +++  ++ LP  S  +I+ DPP+N                  S V     ++D 
Sbjct: 13  DLIVEADNLDFIQTLPDASFRMIYIDPPFNTGRTQRLQSLKTTRSVTGSRVGFKGQTYDT 72

Query: 75  FSS--------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
             S        F  Y +F    LL   R+L P+G L++   Y  +     +L  +     
Sbjct: 73  VKSTLHSYDDAFTDYWSFLEPRLLEAWRLLTPDGALYLHLDYREVHYAKVVLDAMFGRES 132

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQM 180
                  +         ++   H+ ++     P    +         Y A      +   
Sbjct: 133 FLNELIWAYDYGARSKSKWPTKHDNILVYVKDPNNYVWNGQDVDREPYMAPGLVTPEKVA 192

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                  +   +           + TQKP  ++ R++ +S+  GD +LD F GSGT+GA 
Sbjct: 193 LGKLPTDVWWHTIVPPASKERTGYATQKPVGIIRRMIQASSNEGDWVLDFFAGSGTTGAA 252

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
           A++L R F+ +++  + I +  KR+       ++ +     
Sbjct: 253 ARQLGRRFVLVDVNPEAIAVMAKRLDDGALDTSVTIVQTPQ 293


>gi|322434539|ref|YP_004216751.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321162266|gb|ADW67971.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 303

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 68/272 (25%), Positives = 113/272 (41%), Gaps = 22/272 (8%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--------PDHSLVDAV--- 68
            ++I+ G +++VL+ LPA S DLI+ DPP+N        R         D +        
Sbjct: 1   MNRIVLGENLAVLKTLPAHSADLIYIDPPFNTGKTQFRRRMKTVTDAEGDRTGFGGRRFR 60

Query: 69  TDSWDKF-----SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
           T+  D        SF+ Y  F R  ++  RR+L P G+L++      +     ML  +  
Sbjct: 61  TEILDDGLAGYLDSFDDYIGFLRPRMIEARRILTPTGSLFLHVDPREVHYCKVMLDEVFG 120

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANED 177
                     +        +R+   H+ L+W +  PK   +  N      Y A +     
Sbjct: 121 RPCFQNEIIWAYDYGARTSKRWPAKHDNLLWYTRDPKRFTFDLNATDRIPYMAPRLVGAA 180

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
              R      +   +        +  + TQKP  +L RI+   ++PGD +LD F GSGT+
Sbjct: 181 KTARGKTPTDVWWHTIVSPTGKEKTGYATQKPVNMLERIVRVHSRPGDRVLDFFAGSGTT 240

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           G  A++  RSF+ I+   + I +  KR+    
Sbjct: 241 GEAAQRNDRSFLLIDQSPEAIKVMEKRLNLKA 272


>gi|237749758|ref|ZP_04580238.1| DNA methylase [Helicobacter bilis ATCC 43879]
 gi|229374623|gb|EEO25014.1| DNA methylase [Helicobacter bilis ATCC 43879]
          Length = 284

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 97/252 (38%), Positives = 140/252 (55%), Gaps = 8/252 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+  ++L ++  +S D+IFADPPY L  +G L      +V      WD+  + +  D
Sbjct: 21  LYQGDCNALLPQM-KESFDVIFADPPYFLSNDG-LSIQSGKIVSVNKGEWDRGENIDEID 78

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W+   +  LKP G++ + G+YHNIF +G  LQ L+F ILN I W+K+NP PNF  
Sbjct: 79  RFNMEWIANAKIALKPTGSIMISGTYHNIFSLGRALQKLDFKILNIITWQKTNPPPNFSC 138

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K    
Sbjct: 139 RYLTHSTEQIIWARKSHK-YKHIFNYEILKKLNNDKQMRDVWSFPAIAPWEKTFGK---- 193

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP ALL R+L+ ++    II DPF GS T+G  A  L R F+GIE +  +I+++ 
Sbjct: 194 -HPTQKPLALLVRLLLMASNDDSIICDPFSGSSTTGIAANLLGRQFVGIERESSFINLSI 252

Query: 263 KRIASVQPLGNI 274
           KR   +      
Sbjct: 253 KRKNELDSKCKE 264


>gi|206562848|ref|YP_002233611.1| putative DNA methylase [Burkholderia cenocepacia J2315]
 gi|198038888|emb|CAR54850.1| putative DNA methylase [Burkholderia cenocepacia J2315]
          Length = 283

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 27/261 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + ++    LP  S+DLI ADPPY L  +               +  DK  S + + 
Sbjct: 35  LHNRDFLTHAAHLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDDFL 80

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P      
Sbjct: 81  AWTREWLDLAIPKLKPSGSMYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 139

Query: 143 RRFQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RRF + H+ + + +                   T    + K       +   +       
Sbjct: 140 RRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWS 199

Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G
Sbjct: 200 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVG 259

Query: 251 IEMKQDYIDIATKRIASVQPL 271
            E+ + Y  IA +R++++   
Sbjct: 260 YEINESYCAIAHERVSALAAP 280


>gi|78062971|ref|YP_372879.1| DNA methylase N-4/N-6 [Burkholderia sp. 383]
 gi|77970856|gb|ABB12235.1| DNA methylase N-4/N-6 [Burkholderia sp. 383]
          Length = 283

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 116/261 (44%), Gaps = 27/261 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + ++    LP  S+DLI ADPPY L  +               +  DK  S + + 
Sbjct: 35  LHNRDFLTHAAHLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDDFL 80

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P      
Sbjct: 81  AWTREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLKTQ-LTMVNEIIWDRRVPSMGGTT 139

Query: 143 RRFQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RRF + H+ + + +                   T    + K       +   +       
Sbjct: 140 RRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWS 199

Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G
Sbjct: 200 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVG 259

Query: 251 IEMKQDYIDIATKRIASVQPL 271
            E+ + Y  IA +R+ ++   
Sbjct: 260 YEINESYCAIAHERVNALAAP 280


>gi|209527763|ref|ZP_03276257.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209491796|gb|EDZ92157.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 397

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 115/300 (38%), Gaps = 31/300 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+ ++++      S+DLI+ DPP+  Q   +L   D     +  D W   SS + Y
Sbjct: 4   LVYQGDCLNIISTWEKDSIDLIYLDPPFFSQKTHKLTTRDSRKEFSFQDLW---SSHQEY 60

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L    R+L P+G+++V    H    I  +L ++    +            +  
Sbjct: 61  GNFIYQRLQEMWRILSPSGSIFVHCDRHASHLIRLLLDDVFSPQMFRSEIIWHYKRWSNS 120

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-------------------- 181
            +    AH+T+ + + S          +  +  N D  ++                    
Sbjct: 121 QKALLPAHQTIFYYTKSDDYTFNFIYGEYSETTNVDQILQRRKRDEYGKSIYDKDLDGNI 180

Query: 182 -------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                     L  +               +PTQKP  LL +I+  +T  GD+ILDPF GS
Sbjct: 181 IPSGGKKGVPLSDVWEIPYLNPKAKERVGYPTQKPLLLLEQIIKIATNEGDLILDPFCGS 240

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV-LTGKRTEPRVAFNLL 293
           GT+   A  L R+ +GI++  D +++  KR++      +  LT      +        LL
Sbjct: 241 GTTLVAASLLGRNSVGIDISTDAVELTKKRLSDPIKTNSNLLTKGRDSYKNVDESVLGLL 300


>gi|161521164|ref|YP_001584591.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189352659|ref|YP_001948286.1| putative adenine-specific DNA-methyltransferase [Burkholderia
           multivorans ATCC 17616]
 gi|221212473|ref|ZP_03585450.1| DNA modification methylase RsrI [Burkholderia multivorans CGD1]
 gi|28971665|dbj|BAC65265.1| probable DNA-methyltransferasee [Burkholderia multivorans]
 gi|160345214|gb|ABX18299.1| DNA methylase N-4/N-6 domain protein [Burkholderia multivorans ATCC
           17616]
 gi|189336681|dbj|BAG45750.1| putative adenine-specific DNA-methyltransferase [Burkholderia
           multivorans ATCC 17616]
 gi|221167572|gb|EEE00042.1| DNA modification methylase RsrI [Burkholderia multivorans CGD1]
          Length = 283

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 66/261 (25%), Positives = 117/261 (44%), Gaps = 27/261 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + ++   +LP  S+DLI ADPPY L  +               +  DK  S +A+ 
Sbjct: 35  LHNRDFLTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDAFL 80

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +TR WL      LKP+G+++V  ++     I + L+     ++N+I+W +  P      
Sbjct: 81  EWTREWLELAIPKLKPSGSMYVFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGTT 139

Query: 143 RRFQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RRF + H+ + + +                   T    + K       +   +       
Sbjct: 140 RRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWS 199

Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G
Sbjct: 200 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVG 259

Query: 251 IEMKQDYIDIATKRIASVQPL 271
            E+ + Y  IA +R+ ++   
Sbjct: 260 YEINESYCAIARERVHALAAQ 280


>gi|322378612|ref|ZP_08053050.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1]
 gi|322380096|ref|ZP_08054350.1| type I restriction enzyme M [Helicobacter suis HS5]
 gi|321147466|gb|EFX42112.1| type I restriction enzyme M [Helicobacter suis HS5]
 gi|321148972|gb|EFX43434.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1]
          Length = 274

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 97/265 (36%), Positives = 143/265 (53%), Gaps = 8/265 (3%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            ++K  +   +   +L  +P +  DLIFADPPY L  NG L      +V     SWD+  
Sbjct: 12  EDFKFTLYHNDCKEILAHMP-ECFDLIFADPPYFLSNNG-LTIESGQIVSVNKGSWDRLE 69

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +   AF   WL   +  LKP+G++ +  + HN+F +G  LQ L F +LN I W KSNP
Sbjct: 70  GIDQIHAFNLEWLRLAKEALKPSGSILISATQHNLFSLGLALQTLGFKLLNTITWHKSNP 129

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            PNF  R   +A E ++WA  SPK   + FNY+ +KA N+  QMR  W +P  +  E+  
Sbjct: 130 PPNFSCRTLVHASEQILWARKSPK-HAHIFNYERMKALNQGKQMRDVWTLPSIASFEKKC 188

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K     HPTQKP  LL R+L+ ++    +I DPF GS ++G  A  L RSF+G+E +QD
Sbjct: 189 GK-----HPTQKPLNLLLRLLLMASNKESLIGDPFSGSSSTGIAANLLGRSFVGMEKEQD 243

Query: 257 YIDIATKRIASVQPLGNIELTVLTG 281
           +I ++ KR   ++        ++  
Sbjct: 244 FIKLSIKRRQELEVHLEDFKKLVQK 268


>gi|237753354|ref|ZP_04583834.1| DNA methylase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375621|gb|EEO25712.1| DNA methylase [Helicobacter winghamensis ATCC BAA-430]
          Length = 284

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 99/242 (40%), Positives = 138/242 (57%), Gaps = 8/242 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+  ++L ++  +S D+IFADPPY L   G L      +V      WD+  + +  D
Sbjct: 21  LYQGDCNALLPQM-KESFDVIFADPPYFLSNGG-LSIQSGKIVSVNKGEWDRGENIDEID 78

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W+   +  LKP G++ + G+YHNIF +G  LQ L+F ILN I W+K+NP PNF  
Sbjct: 79  RFNTEWIANAKIALKPTGSIMISGTYHNIFSLGRALQKLDFKILNIITWQKTNPPPNFSC 138

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K    
Sbjct: 139 RYLTHSTEQIIWARKSHK-HKHIFNYEILKKLNNDKQMRDVWSFPAIAPWEKTFGK---- 193

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP ALL R+L+ ++    II DPF GS T+G  A  L R FIGIE +  +ID++ 
Sbjct: 194 -HPTQKPLALLVRLLLMASNEDSIICDPFSGSSTTGIAANLLHRQFIGIERESSFIDLSI 252

Query: 263 KR 264
           KR
Sbjct: 253 KR 254


>gi|206975209|ref|ZP_03236123.1| DNA methylase [Bacillus cereus H3081.97]
 gi|206746630|gb|EDZ58023.1| DNA methylase [Bacillus cereus H3081.97]
          Length = 240

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 119/257 (46%), Gaps = 24/257 (9%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS------W 72
            ++ +   + I  ++K+    +DLI  DPPYNL   G   R   + +  + ++      W
Sbjct: 2   IENILYNDDCIKSMKKIETNKIDLIVTDPPYNL---GNFMRNRDTNLKKMRENFFATAGW 58

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D    F+ +     ++     RV+K  G++ V  +   +  + ++ +   F+     +W 
Sbjct: 59  DDME-FDEWKDSMDSFFEESARVMKKGGSMIVFMAIIKVETLISLAEKHGFYYKTTGIWH 117

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NPMP      F N+ E  ++          T+        NE           + S +
Sbjct: 118 KTNPMPRNMNLHFVNSTEAWVYF---------TYKTRTGTFNNEGALFHDFIETSLTSST 168

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+   K     HPTQKPE+L+   +   +   D +LDPF GSGT+G V K+L R+FIG+E
Sbjct: 169 EKKYGK-----HPTQKPESLIKHFVELLSNANDWVLDPFMGSGTTGVVTKRLSRNFIGVE 223

Query: 253 MKQDYIDIATKRIASVQ 269
           + Q+Y +IA  RI  ++
Sbjct: 224 LDQEYFNIAQSRIEEIE 240


>gi|167840376|ref|ZP_02467060.1| DNA modification methylase RsrI [Burkholderia thailandensis MSMB43]
          Length = 286

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 117/259 (45%), Gaps = 27/259 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + +     LP  S+DLI ADPPY L  +               +  DK  S + + 
Sbjct: 35  LHNRDFLHDAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 80

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+TR WL      LKP G+++V  ++     I + L+     ++N+I+W +  P      
Sbjct: 81  AWTREWLELAIPKLKPTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 139

Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
           RRF + H+ + + + S                 T    + K       +   +       
Sbjct: 140 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWS 199

Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G
Sbjct: 200 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVG 259

Query: 251 IEMKQDYIDIATKRIASVQ 269
            E+ + Y  IA +R+AS+ 
Sbjct: 260 YEINESYCAIARERVASLA 278


>gi|42560738|ref|NP_975189.1| DNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492234|emb|CAE76831.1| DNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
          Length = 662

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 114/313 (36%), Gaps = 31/313 (9%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           + +  I    +++   + +  L++L   S+DL++ DPP+  Q    L    +       D
Sbjct: 5   QKKGKIMIKLNQVYNIDCLDGLKQLKDNSIDLVYLDPPFFTQKAHFLVDKTNKKY-FFND 63

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            W      + Y  F +  L+  +RVLK  G+++V         I  +L  +   I     
Sbjct: 64  IW---KDLKEYQEFLKIRLIEIKRVLKSTGSVFVHCDKTANHIIRVLLDEIFGSINFRSE 120

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR--------- 181
                   +   +   ++H+ +   S +   K      D     N D  ++         
Sbjct: 121 IIWVYKRWSNSKKGLLDSHQNIYHYSKTNDFKFNVIYTDYSLTTNIDQILQLRVKDKNNK 180

Query: 182 ------------------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
                                L  + +             +PTQKP  LL RI+   T  
Sbjct: 181 IVYKKDKNNNVVFSDLKKGVPLSDVWNIPFLNPKAKERTSYPTQKPIELLERIISLVTNE 240

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            D++LDPF GSGTS   +K L R+FIG ++  D IDI  +R+ +     +  L     K 
Sbjct: 241 NDVVLDPFVGSGTSVVASKLLNRNFIGFDINIDAIDITNQRLKNPIKSESNLLKNGIDKY 300

Query: 284 TEPRVAFNLLVER 296
                    ++ R
Sbjct: 301 DTKTKQQKQILSR 313


>gi|291571854|dbj|BAI94126.1| type II DNA modification methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 295

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/311 (25%), Positives = 135/311 (43%), Gaps = 44/311 (14%)

Query: 18  EWKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +  +  G++I +L   + A SV+LIF DPPYN+      +              D+++
Sbjct: 7   DDRHTLFHGDAIQILSSQIAANSVNLIFVDPPYNIGKKFSNFH-------------DQWN 53

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E Y  ++  WL  C RVLKPNGTL+V+ S  ++      L+     +    +    + 
Sbjct: 54  SEEDYINWSYQWLDECVRVLKPNGTLYVMTSTQSMPYFDIYLRQKMSILSR--IVWHYDS 111

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGY------------------TFNYDALKAANEDV 178
                 + F + +E ++      K   +                   +        N + 
Sbjct: 112 SGVQAKKYFGSMYEPILHCVKDQKNYIFNSADIKVEAQTGAQRKLIDYRKPVPTQYNSEK 171

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
              + W  P      R R  + E  HP QKPE+LL RI+++ST   D++LDPF G+ T+ 
Sbjct: 172 VPGNVWYFPRV----RYRMAEYEN-HPAQKPESLLERIILASTNKHDLVLDPFAGTFTTA 226

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
           AVAK+L R  + IE +++Y+ I  +R+   Q     +L   +  +T+         +   
Sbjct: 227 AVAKRLGRFSLSIESQEEYLKIGLRRVLGWQEYQGEKLLPPSKNQTKKNTNC---PQNQF 283

Query: 299 IQPGQILTNAQ 309
           IQP   + +A 
Sbjct: 284 IQPS--IFDAD 292


>gi|28493738|ref|NP_787899.1| DNA modification methyltransferase [Tropheryma whipplei str. Twist]
 gi|28572924|ref|NP_789704.1| DNA methylase [Tropheryma whipplei TW08/27]
 gi|28411057|emb|CAD67442.1| putative DNA methylase [Tropheryma whipplei TW08/27]
 gi|28476780|gb|AAO44868.1| DNA modification methyltransferase [Tropheryma whipplei str. Twist]
          Length = 293

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/267 (24%), Positives = 108/267 (40%), Gaps = 20/267 (7%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-----GQLYRPDHSLVDAVTDSWDKF 75
           + +++GN+I  L KLP  S  LI+ DPP+N          ++ R  +        +  K 
Sbjct: 14  NLVVQGNNIDFLHKLPDDSFQLIYIDPPFNTGKRQTRQCSKMVRSPYGEQIGFCGNRYKI 73

Query: 76  SS---------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
            S         F+ Y  F +  L    R+LKP G  ++   Y  +     +L ++     
Sbjct: 74  LSESRTEYADMFDDYLGFLKPRLHEAWRLLKPEGMFYLHLDYREVHYAKILLDSIFGRDS 133

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQM 180
                  +        RR+   H+ ++  +  P+   +         Y A      D   
Sbjct: 134 FINEIIWAYDYGAKTKRRWPAKHDNILVYAKDPRKYLFDSENVDREPYMAPGLVTPDKAK 193

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           R      +   +        +  +PTQKPE +L RI+ +S++P D +LD F GSGT+G V
Sbjct: 194 RGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGVLRRIIQASSRPNDWVLDFFAGSGTTGIV 253

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
           A KL R F+ I+     + I   RI  
Sbjct: 254 AGKLGRKFVLIDNSPQAVKIMKLRIDR 280


>gi|51891472|ref|YP_074163.1| DNA modification methylase M.SthI [Symbiobacterium thermophilum IAM
           14863]
 gi|51855161|dbj|BAD39319.1| DNA modification methylase M.SthI [Symbiobacterium thermophilum IAM
           14863]
          Length = 289

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/281 (24%), Positives = 117/281 (41%), Gaps = 61/281 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            I++G++   L+++P  S+  +   PPY    +             +        S   Y
Sbjct: 18  LILEGDARLALQRIPDNSIQCVVTSPPYWSLRDY-----------GIEGQIGLEDSVYQY 66

Query: 82  DAFTRAWLLACRRVLKPNGTLWV-IGSYHNI----------------------------- 111
                +     RRVLKP+GTLW+ IG  +                               
Sbjct: 67  INTLVSVFREVRRVLKPDGTLWLNIGDSYTSGGRTWRAPDKKNQARAMSIRPDTPEGLKP 126

Query: 112 -------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
                  +R+   LQ   +++ +DI+W K N MP     R   +HE +   S    ++ Y
Sbjct: 127 KDLIGVPWRLAFALQQDGWYLRSDIIWHKPNAMPESVKDRPTRSHEYIFLFSK---SERY 183

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            ++Y A++  N     RS W          +  +  ++ H    P  L+   +++ +KPG
Sbjct: 184 YYDYQAIREEN-GRNRRSVWH---------INTQPNKEAHFAVFPTTLVEPCILAGSKPG 233

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           D +LDPF GSGT+  V + L R ++GIE+  +YI IA KR+
Sbjct: 234 DYVLDPFLGSGTTAVVCQNLDRKYVGIELNPEYIQIAVKRL 274


>gi|317176913|dbj|BAJ54702.1| Type II restriction enzyme M protein [Helicobacter pylori F16]
          Length = 276

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 103/263 (39%), Positives = 146/263 (55%), Gaps = 12/263 (4%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
           S + +  I ++Q+ +F     + +G+   VL +      DLIFADPPY L  +G L   +
Sbjct: 6   SNEIACPIFKSQDQLF----TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQN 59

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             +V      WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L
Sbjct: 60  GKIVSVNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKL 119

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
           +F ILN I W+K+NP PNF  R   ++ E +IWA  S K   + FNY+ LK  N D QMR
Sbjct: 120 DFKILNLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMR 178

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             W  P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A
Sbjct: 179 DVWSFPAIAPWEKTNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAA 233

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
             L+R FIGIE + +++ I+  R
Sbjct: 234 NLLKRQFIGIEKESEFVKISMDR 256


>gi|194290204|ref|YP_002006111.1| DNA-methyltransferase [Cupriavidus taiwanensis LMG 19424]
 gi|193224039|emb|CAQ70048.1| DNA-METHYLTRANSFERASE (DNA-MODIFICATION METHYLASE) PROTEIN;
           Adenine-specific methyltransferase,
           N4/N6-methyltransferase family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 309

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 27/248 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + +    + +LP  SVDLI ADPPY L  +      D  L+             +AY
Sbjct: 29  RLFQEDMFEGIARLPDGSVDLIVADPPYGLGKDYG---NDSDLLSG-----------QAY 74

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+ A    L P GTL++  ++     +  ML+     ++N+I+W +  P     
Sbjct: 75  LDWSERWMDAVVPKLAPKGTLYLFCTWQYSPELFVMLKRR-LTMINEIIWDRRVPSMGGT 133

Query: 142 GRRFQNAHETLIWASPSPKAK-----------GYTFNYDALKAANEDVQMRSDWLIPICS 190
            R+F + H+ + + + +                 T    +         +   +      
Sbjct: 134 TRKFSSVHDNIGFFARARDYYFDLDPVRIPYDPETKKARSRPRFEGKKWLEVGYNPKDLW 193

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              R+  +D E+  HPTQKP  ++ R+++SS  PG ++LDPF GSGT+     +  R F 
Sbjct: 194 SVSRIHRQDPERANHPTQKPLEIVERMVLSSCPPGGLVLDPFAGSGTTAVACLRHGRRFA 253

Query: 250 GIEMKQDY 257
           G E+  +Y
Sbjct: 254 GFEINPEY 261


>gi|170703050|ref|ZP_02893876.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170132042|gb|EDT00544.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 283

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 30/259 (11%)

Query: 28  SISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           +   +    +LP  S+DLI ADPPY L  +               +  DK  S + + A+
Sbjct: 37  NRDFMTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDVFLAW 82

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
           TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P      RR
Sbjct: 83  TREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRR 141

Query: 145 FQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           F + H+ + + +                   T    + K       +   +         
Sbjct: 142 FTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVS 201

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E
Sbjct: 202 RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYE 261

Query: 253 MKQDYIDIATKRIASVQPL 271
           + + Y  IA +R+ ++   
Sbjct: 262 INESYCAIAHERVNALAAQ 280


>gi|219849124|ref|YP_002463557.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219543383|gb|ACL25121.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 304

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/272 (26%), Positives = 114/272 (41%), Gaps = 44/272 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G++I+ L  L  +SVD+IFADPPYN++                   WD F S E Y 
Sbjct: 30  IWVGDAIAWLRSLETESVDMIFADPPYNIKKA----------------EWDTFESQEEYV 73

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            ++  W+    RVLKP+GTL++ G    I  +      L       I   K+       G
Sbjct: 74  EWSLLWIREAARVLKPSGTLYICGFSEIIADLKLPASRLFKGCRWLIWHYKNKA---NLG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK---- 198
             +  +HE+++    S        +       +               G    R      
Sbjct: 131 SDWGRSHESILHFRKSKNFTFNIDDVRIPYGNHTLKYPEHPQAETSQYGKGNGRKNTIWQ 190

Query: 199 ---------------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                                  +  HPTQKPE LL +++++S+  GD+I+DPF GSGT+
Sbjct: 191 PHPRGAKPRDVIEIPTTCNGMHEKTPHPTQKPEELLRKLVLASSNVGDLIVDPFLGSGTT 250

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             VA++LRR++ G ++  +Y   A +RI  V+
Sbjct: 251 AVVAEQLRRNWKGCDISLEYCRWAVRRIELVE 282


>gi|119511116|ref|ZP_01630234.1| type IIS restriction enzyme M1 protein (mod) [Nodularia spumigena
           CCY9414]
 gi|119464211|gb|EAW45130.1| type IIS restriction enzyme M1 protein (mod) [Nodularia spumigena
           CCY9414]
          Length = 293

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 44/294 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ +GNSI  L  L ++S+DL+FADPPYN++                   WD F + E Y
Sbjct: 18  KLYQGNSIDWLTSLESESIDLVFADPPYNIKKA----------------EWDNFENQEKY 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+    R+LK  G+L++ G       +  +    + +  +              
Sbjct: 62  IEWSIQWISQASRILKSTGSLYICG---FSEILADLKHPASKYFKSCRWLIWHYKNKANL 118

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG- 200
           G  +  +HE++I    S   K    +      A+               G    +  +  
Sbjct: 119 GNDWGRSHESIIHFRKSDSVKLNIDDVRIPYGAHTLKYPSHPQAETSAYGKGTKKKHNNW 178

Query: 201 ------------------------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                                   +  HPTQKPE L+ + +++S++ GD+I+DPF GSGT
Sbjct: 179 TPNPKGAKPKDVIEIPTTCNGMDEKTPHPTQKPEELIRKFVLASSQEGDLIIDPFSGSGT 238

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
           +  VA++L R ++G ++  +Y   ATKRI +V+ +   E      K  E RV+ 
Sbjct: 239 TVVVAEQLNRYWMGCDLNIEYNYWATKRIENVRRMTKEEWLAFDRKNAERRVSI 292


>gi|255326978|ref|ZP_05368054.1| site-specific DNA-methyltransferase [Rothia mucilaginosa ATCC
           25296]
 gi|255296195|gb|EET75536.1| site-specific DNA-methyltransferase [Rothia mucilaginosa ATCC
           25296]
          Length = 423

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 109/280 (38%), Gaps = 20/280 (7%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY--------RPDHSLVDAVTDSW- 72
            +++ +++  L +LP  +  +I+ DPP+N                + D +     + S  
Sbjct: 33  LLVQADNLEYLRELPDGAFTVIYIDPPFNTGKKQTRRTLSAEASEKGDRTGFKGKSYSST 92

Query: 73  -----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
                    SFE Y AF    +    R+L  +GTL++   +  +  +  M   +      
Sbjct: 93  LQTLASYNDSFEDYWAFLAPRIEQAHRLLAQDGTLYLHLDWREVHYVKIMCDMIFGRENF 152

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQMR 181
                 +        RR+   H+ ++  +   +   +         Y A     E+   R
Sbjct: 153 INELIWAYDYGAKSTRRWPTKHDNILVYAKDHRCYYFNTAEVDREPYMAPGLVTEEKASR 212

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                 +   +        +  +PTQKP  LL R++ +S++PGD +LD F GSG++GA A
Sbjct: 213 GKLPTDVWWHTIVSPTGREKTGYPTQKPTGLLRRMIAASSRPGDWVLDFFAGSGSTGAAA 272

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
            +L R F+ ++     I++  KR+            V  G
Sbjct: 273 AQLGRKFVCVDQNPPAIEVMAKRLGVDSVSFAEYRGVPRG 312


>gi|284052959|ref|ZP_06383169.1| putative methyltransferase [Arthrospira platensis str. Paraca]
          Length = 295

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 79/311 (25%), Positives = 135/311 (43%), Gaps = 44/311 (14%)

Query: 18  EWKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +  +  G++I +L   + A SV+LIF DPPYN+      +              D+++
Sbjct: 7   DDRHTLFHGDAIQILSSQIAANSVNLIFVDPPYNIGKKFSNFH-------------DQWN 53

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E Y  ++  WL  C RVLKPNGTL+V+ S  ++      L+     +    +    + 
Sbjct: 54  SEEDYINWSYQWLDECVRVLKPNGTLYVMTSTQSMPYFDIYLRQKMSILSR--IVWHYDS 111

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGY------------------TFNYDALKAANEDV 178
                 + F + +E ++      K   +                   +        N + 
Sbjct: 112 SGVQAKKYFGSMYEPILHCVKDRKNYIFNSADIKVEAKTGAQRKLIDYRKPVPTQYNSEK 171

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
              + W  P      R R  + E  HP QKPE+LL RI+++ST   D++LDPF G+ T+ 
Sbjct: 172 VPGNVWYFPRV----RYRMAEYEN-HPAQKPESLLERIILASTNKHDLVLDPFAGTFTTA 226

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
           AVAK+L R  + IE +++Y+ I  +R+   Q     +L   +  +T+         +   
Sbjct: 227 AVAKRLGRFSLSIESQEEYLKIGLRRVLGWQEYQGEKLLPPSKNQTKKNTNC---PQNQF 283

Query: 299 IQPGQILTNAQ 309
           IQP   + +A 
Sbjct: 284 IQPS--IFDAD 292


>gi|156743626|ref|YP_001433755.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156234954|gb|ABU59737.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 332

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/272 (26%), Positives = 112/272 (41%), Gaps = 44/272 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G++I+ L  L  +SVD+IFADPPYN++                   WD F S E Y 
Sbjct: 58  IWIGDTIAWLRSLETESVDMIFADPPYNIRKA----------------EWDTFESQEEYV 101

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            ++  W+    RVLKP+GTL++ G    I  +              I   K+       G
Sbjct: 102 EWSLLWIREAARVLKPDGTLYICGFSEIIADLKLPASRFFKGCRWLIWHYKNKA---NLG 158

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK---- 198
             +  +HE+++    S        +       +               G    R      
Sbjct: 159 SDWGRSHESILHFRKSKNFTFNIDDVRIPYGNHTLKYPEHPQAETSQYGKGNGRKNSIWQ 218

Query: 199 ---------------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                                  +  HPTQKPE LL +++++S+  GD+I+DPF GSGT+
Sbjct: 219 PHPRGAKPRDVIEIPTTCNGMHEKTPHPTQKPEELLRKLVLASSNVGDLIVDPFLGSGTT 278

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             VA++LRR++ G ++  +Y     +RI  V+
Sbjct: 279 AVVAEQLRRNWKGCDISLEYCRWTVRRIELVE 310


>gi|171321986|ref|ZP_02910869.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
 gi|171092716|gb|EDT38001.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
          Length = 283

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 113/254 (44%), Gaps = 30/254 (11%)

Query: 28  SISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           +   +    +LP  S+DLI ADPPY L  +               +  DK  S + + A+
Sbjct: 37  NRDFMTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDVFLAW 82

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
           TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P      RR
Sbjct: 83  TREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRR 141

Query: 145 FQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           F + H+ + + +                   T    + K       +   +         
Sbjct: 142 FTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVS 201

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E
Sbjct: 202 RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYE 261

Query: 253 MKQDYIDIATKRIA 266
           + + Y  IA +R+ 
Sbjct: 262 INESYCAIAHERVN 275


>gi|167583952|ref|ZP_02376340.1| DNA methylase N-4/N-6 domain protein [Burkholderia ubonensis Bu]
          Length = 283

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 30/254 (11%)

Query: 28  SISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           +   +    +LP  S+DLI ADPPY L  +               +  DK  S + + A+
Sbjct: 37  NRDFMTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDDHLAW 82

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
           T AWL      LKP G+++V  ++     I + L+     ++N+I+W +  P      RR
Sbjct: 83  TLAWLELAIPKLKPTGSMYVFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGTTRR 141

Query: 145 FQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           F + H+ + + +                   T    + K       +   +         
Sbjct: 142 FTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVS 201

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E
Sbjct: 202 RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYE 261

Query: 253 MKQDYIDIATKRIA 266
           + + Y  IA +RIA
Sbjct: 262 INESYCAIAHERIA 275


>gi|33337327|gb|AAQ13331.1| HpyIIIM protein [Helicobacter pylori]
          Length = 274

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 136/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +      DLIFADPPY L  +G L      +V      WDK  S    
Sbjct: 19  TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 77  DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E++  K   
Sbjct: 137 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + ++I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFIQIS 250

Query: 262 TKR 264
             R
Sbjct: 251 MDR 253


>gi|167621342|ref|ZP_02389973.1| DNA modification methylase RsrI [Burkholderia thailandensis Bt4]
 gi|257141965|ref|ZP_05590227.1| DNA modification methylase RsrI [Burkholderia thailandensis E264]
          Length = 285

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 27/262 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + +     LP  S+DLI ADPPY L  +               +  DK  S + + 
Sbjct: 34  LHNRDFLHEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 79

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+TR WL      LK  G+++V  ++     I + L+     ++N+I+W +  P      
Sbjct: 80  AWTREWLELAIPKLKSTGSMYVFCTWQYAPEIFSFLKTR-LTMINEIIWDRRVPSMGGTT 138

Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
           RRF + H+ + + + S                 T    + K       +   +       
Sbjct: 139 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWS 198

Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G
Sbjct: 199 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVG 258

Query: 251 IEMKQDYIDIATKRIASVQPLG 272
            E+ + Y  IA +R+AS+  + 
Sbjct: 259 YEINESYCAIARERVASLAAVP 280


>gi|167577250|ref|ZP_02370124.1| DNA modification methylase RsrI [Burkholderia thailandensis TXDOH]
          Length = 285

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 27/262 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + +     LP  S+DLI ADPPY L  +               +  DK  S + + 
Sbjct: 34  LHNRDFLHEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 79

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+TR WL      LK  G+++V  ++     I + L+     ++N+I+W +  P      
Sbjct: 80  AWTREWLELAIPKLKSTGSMYVFCTWQYAPEIFSFLKTR-LTMINEIIWDRRVPSMGGTT 138

Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
           RRF + H+ + + + S                 T    + K       +   +       
Sbjct: 139 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWS 198

Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G
Sbjct: 199 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVG 258

Query: 251 IEMKQDYIDIATKRIASVQPLG 272
            E+ + Y  IA +R+AS+  + 
Sbjct: 259 YEINESYCAIARERVASLAAVP 280


>gi|317179900|dbj|BAJ57686.1| Type II restriction enzyme M protein [Helicobacter pylori F32]
          Length = 277

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 100/243 (41%), Positives = 136/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +      DLIFADPPY L  +G L      +V      WDK  S    
Sbjct: 22  TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRVLQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E++  K   
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + ++I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFIQIS 253

Query: 262 TKR 264
             R
Sbjct: 254 MDR 256


>gi|221196942|ref|ZP_03569989.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2M]
 gi|221203612|ref|ZP_03576631.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2]
 gi|221177546|gb|EEE09974.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2]
 gi|221183496|gb|EEE15896.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2M]
          Length = 283

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/261 (25%), Positives = 117/261 (44%), Gaps = 27/261 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + ++   +LP  S+DLI ADPPY L  +               +  DK  S +A+ 
Sbjct: 35  LHNRDFLTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDAFL 80

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +TR WL      LKP+G+++V  ++     I + L+     ++N+I+W +  P      
Sbjct: 81  GWTREWLELAIPKLKPSGSMYVFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGTT 139

Query: 143 RRFQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RRF + H+ + + +                   T    + K       +   +       
Sbjct: 140 RRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWS 199

Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G
Sbjct: 200 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVG 259

Query: 251 IEMKQDYIDIATKRIASVQPL 271
            E+ + Y  IA +R+ ++   
Sbjct: 260 YEINESYCAIARERVHALAAQ 280


>gi|218439992|ref|YP_002378321.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218172720|gb|ACK71453.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 305

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/309 (20%), Positives = 128/309 (41%), Gaps = 31/309 (10%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +  + DKI+ G+ + +  K+P +S+D+ FADPP+N +      + +              
Sbjct: 2   LDSYIDKILLGDCLDLFSKIPDESIDVTFADPPFNFKKKYGNIKDN-------------- 47

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             F+ Y  +   W+    RV KP+G++++    HNI +  T   +      N   W   +
Sbjct: 48  LEFKEYLKWCELWIDEMIRVTKPSGSIFI----HNIPKWLTYYCSFLNEKSNFRHWISWD 103

Query: 136 PMPNFRGRRFQNAHETLIWASP-------------SPKAKGYTFNYDALKAANEDVQMRS 182
                 G+  Q +H  +++ +                + +   + Y       + +    
Sbjct: 104 APTAPMGKTLQPSHYGILFYAKTLAKNKFYEIRYSHKRCRKCNYLYKDYGGKKDSIHPFG 163

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
             +  + +   R+++      HP Q P  LL RI++ ST   DIILDPF G+GT+   AK
Sbjct: 164 PLVSDVWTDIHRIKHNKYRDNHPCQLPVHLLERIILMSTDESDIILDPFMGTGTTAIAAK 223

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
           +L R +IG E+ + Y+++A  ++   +    I    ++        +   + ++   +  
Sbjct: 224 RLGRHYIGFEINELYLEVAEGKLRQEKDNSKIGNVWVSFFPNPKYNSVVTIRDKDWEELA 283

Query: 303 QILTNAQGN 311
           Q     +  
Sbjct: 284 QNYFIPKER 292


>gi|188526898|ref|YP_001909585.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
 gi|188143138|gb|ACD47555.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
          Length = 277

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 134/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +      DLIFADPPY L  +G L      +V      WDK  S    
Sbjct: 22  TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKANGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLERQFIGIEKESEFVKIS 253

Query: 262 TKR 264
             R
Sbjct: 254 MDR 256


>gi|229826749|ref|ZP_04452818.1| hypothetical protein GCWU000182_02125 [Abiotrophia defectiva ATCC
           49176]
 gi|229789619|gb|EEP25733.1| hypothetical protein GCWU000182_02125 [Abiotrophia defectiva ATCC
           49176]
          Length = 312

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 117/278 (42%), Gaps = 26/278 (9%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
               + + +  + E  DK I GN++ +L  LP  SVDL+  DPPYNL  +    +   + 
Sbjct: 21  KRCMVLDKKAELSEILDKTILGNTLEILSLLPENSVDLLIVDPPYNLDKDFHGNKFKRT- 79

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                       S E Y+ +T +W+   + +LK N T++V   + +  +I  +L+     
Sbjct: 80  ------------SGEIYEEYTESWIKLVKPLLKKNATIYVCCDWLSSSQIFMVLKEYFHV 127

Query: 125 ILNDIVWR---------KSNPMPNFRGRRFQNAHETLIWASPSPKA----KGYTFNYDAL 171
                  R           N M +       N +   + A    ++              
Sbjct: 128 QNRITWQREKGRGALTNWKNGMEDIWFATNSNKYTFNVEAVKVRRSVIAPYKEDGKPKDW 187

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           +   E     +         S    +      HPTQKPE LL++++++S+  GD++LDPF
Sbjct: 188 EETKEGRFRNTYPSNFWDDISIPYWSMPENTAHPTQKPEKLLAKLILASSNEGDVVLDPF 247

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GSG++   AKKL R +IGIE  + Y   A KR+   +
Sbjct: 248 LGSGSTSVTAKKLGRHYIGIEQNEQYCVWAEKRLHMAE 285


>gi|261393408|emb|CAX51044.1| putative DNA modification methylase [Neisseria meningitidis 8013]
 gi|325205032|gb|ADZ00486.1| adenine-specific methyltransferase HpaI [Neisseria meningitidis
           M01-240355]
          Length = 255

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 119/270 (44%), Gaps = 33/270 (12%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--------NGQLYR 59
            +N  ++++ E+++K +KG+S+ +++ +P+ S+DLI   PPYNL+               
Sbjct: 3   NLNLEKDTLAEFRNKFLKGDSLEIMKSIPSGSIDLIVTSPPYNLKNSTGNGMKDGRGGKW 62

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            + SL++  +D  D       Y  + R  L    R+LK +G ++    +     +     
Sbjct: 63  KNASLINGYSDHNDCM-PHHEYVEWQRNCLSEMYRLLKDDGAIFYNHKWRVQGGLLQDRH 121

Query: 120 NLNFWI-LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           ++     +  I+  +     NF    F   +E +        +                +
Sbjct: 122 DIVSGFPVRQIIIWRRKGGINFNKGYFLPTYEVIYMICKPKFS----------------L 165

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
              ++    +   ++ ++N      HP   P AL+ RI+ S+     +ILDPF GSGT+ 
Sbjct: 166 CPGANKYGDVWEFTQEMKN-----PHPAPFPVALIERIISSTNAK--VILDPFMGSGTTA 218

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
             AKKL R FIGIE+  +YI +A +R+   
Sbjct: 219 IAAKKLYREFIGIEISAEYIALAQERLNET 248


>gi|320101941|ref|YP_004177532.1| DNA methylase N-4/N-6 domain-containing protein [Isosphaera pallida
           ATCC 43644]
 gi|319749223|gb|ADV60983.1| DNA methylase N-4/N-6 domain protein [Isosphaera pallida ATCC
           43644]
          Length = 336

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 81/300 (27%), Positives = 126/300 (42%), Gaps = 50/300 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+ I+ + +L  KSVDLIFADPP+N+              D   D  D     + Y 
Sbjct: 43  IHVGDCIAGMNQLEDKSVDLIFADPPFNIGYTY----------DVYNDRCDD----QEYL 88

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFR 141
           A++R W+ A  RVL P GT W+         +  ++           I+W  +  +   R
Sbjct: 89  AWSRRWIEAAVRVLSPTGTFWLAIGDDFAAELKVLMHRELGLTFRGWIIWYYTFGVHCKR 148

Query: 142 GRRFQNAHETLIWASPSPKAKGY-------------TFNYDALKAA---NEDVQM----- 180
              F  +H  L++ +  P+   +              +N           +D  +     
Sbjct: 149 K--FTRSHTHLLYFTRHPRDFTFNADAIRVPSARQRVYNDKRAHPLGRVPDDTWILRPQD 206

Query: 181 --------RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                   +S W +P   G+ R R    +  H  Q PE +L RI+ + + PGD++LDPF 
Sbjct: 207 FPGGFGPDQSVWHVPRVCGTFRER----QGWHGCQMPERILGRIMSACSNPGDLVLDPFV 262

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
           GSGT+ AVA+KL R  +G E+  DY   A +R+ SV+P   ++          PR     
Sbjct: 263 GSGTTLAVARKLHRRGVGFELSADYAMNACQRLESVRPGDPLDGGDGLETLARPRQPRGS 322


>gi|308062955|gb|ADO04842.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           Sat464]
          Length = 276

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +      DLIFADPPY L  +G L      +V      WDK  S    
Sbjct: 22  TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEILKKINNDKQMRDVWSFPAIAPWEKANGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFIGIEKESEFVKIS 253

Query: 262 TKR 264
             R
Sbjct: 254 MDR 256


>gi|2995646|gb|AAC08984.1| DNA modification methyltransferase M.XbaI [Xanthomonas campestris]
          Length = 423

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 66/281 (23%), Positives = 105/281 (37%), Gaps = 30/281 (10%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           ++G+ +  L +L     DL++ DPP+           D     +  D+W        Y  
Sbjct: 11  VQGDCLVELARLEECEADLVYLDPPFFTNRRHSSISRDRINAFSFDDAWG---DLGEYAD 67

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
           F    L    RVLK +G+++V       F + T+L N+            S    +   R
Sbjct: 68  FMEQRLREAHRVLKHSGSIFVHCDTSANFLLRTLLNNIFGASQFRSEIIWSYKRWSNSAR 127

Query: 144 RFQNAHETLIWASPS--------PKAKGYTFNYDALKAANE------------------- 176
               AH+T+++ S S          +   T N D +    +                   
Sbjct: 128 NLLPAHQTILFYSKSDAYKFNVLHGSYSETTNVDQILQLRQRDADGVSKYATDKLGNTIY 187

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
             +     L  + +             +PTQKP  LL RI+  ST PGD I+DPF GSGT
Sbjct: 188 GTEKNGVPLNDVWAIPFLNPKAKERTGYPTQKPILLLERIIEISTDPGDFIVDPFCGSGT 247

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           +   A  L R   GI+  ++ + +A +RI       +  L 
Sbjct: 248 TLVAAAILGRRAFGIDTSREAVALANRRIEEPVRTDSALLK 288


>gi|134293157|ref|YP_001116893.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134136314|gb|ABO57428.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
           G4]
          Length = 283

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 27/261 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + ++   +LP  S+DLI ADPPY L  +               +  DK  S +A+ 
Sbjct: 35  LYNRDFMTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDAFL 80

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P      
Sbjct: 81  AWTREWLDLAIPKLKPSGSMYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 139

Query: 143 RRFQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RRF + H+ + + +                   T    + K       +   +       
Sbjct: 140 RRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWS 199

Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G
Sbjct: 200 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVG 259

Query: 251 IEMKQDYIDIATKRIASVQPL 271
            E+ + Y  IA +R+ ++   
Sbjct: 260 YEINESYCAIAHERVNALAAQ 280


>gi|210135511|ref|YP_002301950.1| hypothetical protein HPP12_1318 [Helicobacter pylori P12]
 gi|210133479|gb|ACJ08470.1| hypothetical protein HPP12_1318 [Helicobacter pylori P12]
          Length = 159

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 80/145 (55%), Positives = 100/145 (68%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SFE YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPK 160
           P+PNF G+R  NAHETLIW +   K
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKKIK 148


>gi|311070542|ref|YP_003975465.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
           atrophaeus 1942]
 gi|310871059|gb|ADP34534.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
           atrophaeus 1942]
          Length = 360

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 137/313 (43%), Gaps = 48/313 (15%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +KI  G+++++L  +P  SVDL+   PPYN+       RP                  E
Sbjct: 35  LNKIYNGDTMNMLLDIPDNSVDLVVTSPPYNINKFKNDRRP-----------------LE 77

Query: 80  AYDAFTRAWLLACRRVLKPNGT-LWVIGSYHNI--------FRIGTMLQNLNFWILNDIV 130
            Y  +    +  C RVLKP+G+  W +G+Y N          R   + ++L  +  N IV
Sbjct: 78  EYLKWQTEIIEQCHRVLKPSGSIFWQVGTYVNDSGAHIPLDIRFFPIFESLGMFPRNRIV 137

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI---- 186
           W + + +     ++F   HET++W + +P+ K +       +        + D       
Sbjct: 138 WVRPHGL--HANKKFAGRHETILWFTKTPEYKFFLDPIRVPQKYANKKHYKGDKKGELSG 195

Query: 187 --------PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                    + +      N + + +HPTQ PE ++ RI++S+T+P DI+LDPF G GT+ 
Sbjct: 196 DPLGKNPGDVWAFRNVRHNHEEDTIHPTQYPEDMIERIVLSTTEPNDIVLDPFIGMGTTA 255

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
           +VAK L R F G E++++Y+DIA + ++      +        K              G+
Sbjct: 256 SVAKNLNRYFCGAEIEKEYVDIAYQILS---GEPDENNNFPNLKTLRQYCEK-----NGI 307

Query: 299 IQPGQILTNAQGN 311
           I P Q     Q  
Sbjct: 308 IDPSQYTFTRQRK 320


>gi|325523911|gb|EGD02128.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia sp.
           TJI49]
          Length = 284

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 30/259 (11%)

Query: 28  SISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           +   +    +LP  S+DLI ADPPY L  +               +  DK  S +A+ A+
Sbjct: 38  NRDFMTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDAFLAW 83

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
           TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P      RR
Sbjct: 84  TREWLELAVPKLKPSGSMYIFCTWQYAPEIFSFLKTR-LTMVNEIIWDRRVPSMGGTTRR 142

Query: 145 FQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           F + H+ + + +                   T    + K       +   +         
Sbjct: 143 FTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVS 202

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E
Sbjct: 203 RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYE 262

Query: 253 MKQDYIDIATKRIASVQPL 271
           + + Y  IA +R++++   
Sbjct: 263 INESYCAIAHERVSALAAQ 281


>gi|308061386|gb|ADO03274.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           Cuz20]
          Length = 276

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +      DLIFADPPY L  +G L      +V      WDK  S    
Sbjct: 22  TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DGFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E++  K   
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLERQFIGIEKESEFVKIS 253

Query: 262 TKR 264
             R
Sbjct: 254 MDR 256


>gi|15643096|ref|NP_228139.1| m4C-methyltransferase [Thermotoga maritima MSB8]
 gi|4980829|gb|AAD35415.1|AE001714_6 m4C-methyltransferase [Thermotoga maritima MSB8]
          Length = 329

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 99/269 (36%), Gaps = 39/269 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
               DK+I+G++  VL+K+P  S+ L+   PPYN+                     D+  
Sbjct: 72  ENLLDKVIEGDAREVLKKIPDCSIHLMVTSPPYNVGKEY-----------------DEDM 114

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY--------------HNIFRIGTMLQNLN 122
           + + Y  F    +    RVL   G      +               H   +IG +++   
Sbjct: 115 TLDEYLEFIEEIMKEVYRVLVWGGRACFNVANLGRKPYIPLHAYLIHLFEKIGFLIRGEI 174

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQ---NAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
            W   + V   S    ++         + HE +I  S     +    + +A      +  
Sbjct: 175 IWDKGEAVSGSSTAWGSWMSPVNPVLRDQHEYIIVMSKGDLKRRKPSDREAKSTITREEF 234

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           +            E  +       HP   PE L  R +   T  GD++LDPF G GT+  
Sbjct: 235 LE-FTRSVWKFPPESAK----RVGHPAPFPEELPYRCIQLYTFKGDVVLDPFAGVGTTCV 289

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            A K  R F+GIE+  +Y+  A +R+  +
Sbjct: 290 AAVKTGRHFVGIEINPEYVKKAEERVKDI 318


>gi|20177971|sp|Q45489|MTB2_BACSU RecName: Full=Modification methylase BglII; Short=M.BglII; AltName:
           Full=N(4)- cytosine-specific methyltransferase BglII
 gi|1293620|gb|AAC45061.1| BglII modification methylase [Bacillus subtilis]
          Length = 360

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 137/313 (43%), Gaps = 48/313 (15%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +KI  G+++++L  +P  SVDL+   PPYN+       RP                  E
Sbjct: 35  LNKIYNGDTMNMLLDIPDNSVDLVVTSPPYNINKFKNDRRP-----------------LE 77

Query: 80  AYDAFTRAWLLACRRVLKPNGT-LWVIGSYHNI--------FRIGTMLQNLNFWILNDIV 130
            Y  +    +  C RVLKP+G+  W +G+Y N          R   + ++L  +  N IV
Sbjct: 78  EYLKWQTEIIEQCHRVLKPSGSIFWQVGTYVNDSGAHIPLDIRFFPIFESLGMFPRNRIV 137

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI---- 186
           W + + +     ++F   HET++W + +P+ K +       +        + D       
Sbjct: 138 WVRPHGL--HANKKFAGRHETILWFTKTPEYKFFLDPIRVPQKYANKKHYKGDKKGELSG 195

Query: 187 --------PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                    + +      N + + +HPTQ PE ++ RI++S+T+P DI+LDPF G GT+ 
Sbjct: 196 DPLGKNPGDVWAFRNVRHNHEEDTIHPTQYPEDMIERIVLSTTEPNDIVLDPFIGMGTTA 255

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
           +VAK L R F G E++++Y+DIA + ++      +        K              G+
Sbjct: 256 SVAKNLNRYFYGAEIEKEYVDIAYQILS---GEPDENNNFPNLKTLRQYCEK-----NGI 307

Query: 299 IQPGQILTNAQGN 311
           I P Q     Q  
Sbjct: 308 IDPSQYTFTRQRK 320


>gi|15644722|ref|NP_206892.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
 gi|2313175|gb|AAD07163.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
          Length = 277

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +      DLIFADPPY L  +G L      +V      WDK       
Sbjct: 22  TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEDGINGI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DEFNYQWINNAKKALKDTGSLLISGTYHNIFSLGCVLQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E++  K   
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + ++I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFIGIEKESEFIKIS 253

Query: 262 TKR 264
             R
Sbjct: 254 MDR 256


>gi|291295897|ref|YP_003507295.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290470856|gb|ADD28275.1| DNA methylase N-4/N-6 domain protein [Meiothermus ruber DSM 1279]
          Length = 286

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 68/277 (24%), Positives = 115/277 (41%), Gaps = 36/277 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL--------------------QLNGQLYRPD 61
           +I++   +  +  LP  S  LI+ DPP+N                        G+ YR +
Sbjct: 3   RIVQAECLDYIRTLPEASFPLIYLDPPFNTRKTQQRRRIRAVADEQGSRRGFGGKRYRTE 62

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                   D +D F        F R  L    R+L PNG+L+V   Y  +  +  +L  +
Sbjct: 63  ALEAPVYPDRYDDF------VEFLRPRLEQAYRLLTPNGSLFVHLDYREVHYVKVLLDQI 116

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA--------LKA 173
                       +        +R+   H+TL+W +     + YTFNY+A         K 
Sbjct: 117 FGRKSFINEIIWAYDYGGRSKKRWPAKHDTLLWYAKH--PQKYTFNYEAIDRIPYLAPKM 174

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           A  +   R      +   +    +   +  +PTQKP  LL RI+   + PG+++LD F G
Sbjct: 175 AGPEKASRGKTPTDVWWMTIVPTSSKEKTGYPTQKPLRLLERIVRVHSNPGEVVLDFFAG 234

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           SGT+G  A +  R F+ ++   D + +  +R+A+ +P
Sbjct: 235 SGTTGEAAARNGRGFLLVDQSPDAVAVMRRRLAAFEP 271


>gi|109948003|ref|YP_665231.1| DNA methyltransferase [Helicobacter acinonychis str. Sheeba]
 gi|109715224|emb|CAK00232.1| DNA methyltransferase [Helicobacter acinonychis str. Sheeba]
          Length = 278

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 104/258 (40%), Positives = 145/258 (56%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           N+  +S+FE  DK+    +G+   VL  L   + DLIFADPPY L  +G L      +V 
Sbjct: 5   NQTPHSVFESTDKLFTLYQGDCNEVL-SLFENTFDLIFADPPYFLSNDG-LSIQSGKIVS 62

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK       D F   W+ + ++ LK  G+L + G+YHN+F +G +LQ L+F IL
Sbjct: 63  VNKGDWDKEERINDIDEFNYQWINSAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKIL 122

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  
Sbjct: 123 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINSDKQMRDVWSF 181

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 182 PAIAPWEKTNGK-----HPTQKPLALLVRLLLMASNENSLIGDPFSGSSTTGIAANLLKR 236

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I ++  R
Sbjct: 237 KFIGIEKESEFIKMSINR 254


>gi|297379313|gb|ADI34200.1| Modification methylase [Helicobacter pylori v225d]
          Length = 277

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +      DLIFADPPY L  +G L      +V      WDK  S    
Sbjct: 22  TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKTNGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 253

Query: 262 TKR 264
             R
Sbjct: 254 IDR 256


>gi|167566406|ref|ZP_02359322.1| N-6 adenine-specific DNA methylase [Burkholderia oklahomensis
           EO147]
          Length = 282

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 27/263 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + ++    LP  S+DLI ADPPY L  +               +  DK  S + + 
Sbjct: 34  LHNRDFLTEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 79

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+TR WL      LK +G+++V  ++     I + L+     ++N+I+W +  P      
Sbjct: 80  AWTREWLDLAIPKLKSSGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 138

Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
           RRF + H+ + + + S                 T    + K       +   +       
Sbjct: 139 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWS 198

Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G
Sbjct: 199 VSRLHRQHAERVDHPTQKPLEIVERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVG 258

Query: 251 IEMKQDYIDIATKRIASVQPLGN 273
            E+ + Y  IA +R+A++    +
Sbjct: 259 YEINESYCAIAHERVAALAAPTD 281


>gi|150377536|ref|YP_001314131.1| site-specific DNA-methyltransferase (adenine-specific)
           [Sinorhizobium medicae WSM419]
 gi|150032083|gb|ABR64198.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Sinorhizobium medicae WSM419]
          Length = 707

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 74/403 (18%), Positives = 150/403 (37%), Gaps = 60/403 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK----------SVDLIFADPPYNL 51
           +Q++  + +     +  W +K+I G++  +L  L              + LI+ DPP+++
Sbjct: 74  AQQDLFSTDSRGRQLQGWNNKLIWGDNKLILSSLKNGPLRQEIERHGGLKLIYIDPPFDV 133

Query: 52  QLNGQL----------YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
             +  +           +P+     A  D+W + +   ++ A     L+ CR +L   G+
Sbjct: 134 GADFSMDIEIGDDTFTKKPNILEEIAYRDTWGRGAD--SFIAMIYERLILCRDLLADEGS 191

Query: 102 LWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRG-RRFQNAHETLIWASPS 158
           ++V   +   + I +++  +    +  N+I+W   N +    G + F   H+ L+  S  
Sbjct: 192 IFVHCDWRVNWAIRSVMNEIFGANFFRNEIIWHYENKLGTGWGAKTFDTRHDVLLRFSKG 251

Query: 159 PKAKGY-------TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD------------ 199
            K                 +    E  ++           +E  + +             
Sbjct: 252 KKYVHNEIAEKVKVEKMQPVTKKVEGERIWLRNDDGSLMYAEGAKERPVGDVWTIPIINP 311

Query: 200 ---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  +PTQKPE L+ RI++S +  GD+I D F GSGT+ AVA+KL R +I  ++ + 
Sbjct: 312 VATERLNYPTQKPEKLIERIILSGSNEGDLIADFFVGSGTTAAVAEKLGRKWIVSDLGKF 371

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
            +    KR+  VQ     E       R    +       +  +     L   Q       
Sbjct: 372 AVHTTRKRMIGVQRGLKAE---GKDYRAFEILNLGRYERQHYVGVNPNLREEQRQKQ--- 425

Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELH 359
                     +  +   +      +E  +G+  ++ ++ G L 
Sbjct: 426 -------LEEKETAFLDLILHAYRAERTDGFASFHGKRAGRLV 461


>gi|237756015|ref|ZP_04584598.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691831|gb|EEP60856.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 267

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 109/265 (41%), Gaps = 21/265 (7%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N + ++ +++I G+++ +L+++P KS+DL    PPYN +     +  D    +   D   
Sbjct: 2   NELEKFINQVIHGDALEILKQIPDKSIDLGITSPPYNKKEKHGGWLVDKVRYNGYKD--- 58

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
              S E Y ++    L    RV K  G+ +     H +      + +   W+L       
Sbjct: 59  -VMSEEEYQSWQVEVLNQLYRVTKEGGSFFYN---HKVRYEDGKMIHPLQWLLKTKWNIW 114

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
              + N R              + + +   +    + +    +             +   
Sbjct: 115 QEIIWNRR-------------IAGNIRGWRFWQVEERIYWLVKGKPKELKSKHAKLTSVW 161

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIE 252
            +R + G K HP   P  L +RI+ S     D I++DPF G+GT+   AK L + +IG++
Sbjct: 162 DIRPEHGHKEHPAVFPIELPTRIISSILDENDGIVIDPFCGTGTTLVAAKLLGKKYIGVD 221

Query: 253 MKQDYIDIATKRIASVQPLGNIELT 277
           + ++Y+D A KRI   +      L 
Sbjct: 222 ISKEYVDYAKKRIEMAKEEERRILK 246


>gi|297566253|ref|YP_003685225.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus
           silvanus DSM 9946]
 gi|296850702|gb|ADH63717.1| DNA methylase N-4/N-6 domain protein [Meiothermus silvanus DSM
           9946]
          Length = 284

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 111/270 (41%), Gaps = 22/270 (8%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT------------ 69
           +II   +++ L+ LP  +  LI+ DPP+N        R   +  DA              
Sbjct: 3   RIILAENLAYLQTLPDGAFPLIYIDPPFNTGRIQSRRRI-RAKSDANGTRGGFGGRRYQV 61

Query: 70  ---DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
              DS     S + + AF    L    RVL  NG+ ++   Y  I     ++  +     
Sbjct: 62  ELLDSPVYADSHQDFLAFLEPRLQEGYRVLSENGSFFLHLDYREIHYAKVLMDQIFGRES 121

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF------NYDALKAANEDVQM 180
                  +         R+   H+T++W + +P+   + +       Y A   A  +   
Sbjct: 122 FINEIIWAYDFGGRPKNRWPAKHDTILWYAKNPRRYTFHYTEIDRIPYMAPNLAGREKAR 181

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           R      +   +    N   +  +PTQKP  LL RI+   + PGDI+LD F GSGT+G  
Sbjct: 182 RGKVPTDVWWQTIVPTNSKEKTGYPTQKPLKLLERIIRVHSNPGDIVLDFFAGSGTTGEA 241

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           A +L R F+ ++   + + I  +R+A  +P
Sbjct: 242 AARLGRGFVLVDHHPEAVQIMAQRLAFAKP 271


>gi|257125924|ref|YP_003164038.1| methyltransferase [Leptotrichia buccalis C-1013-b]
 gi|257049863|gb|ACV39047.1| DNA methylase N-4/N-6 domain protein [Leptotrichia buccalis
           C-1013-b]
          Length = 297

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 29/268 (10%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           + G+ + +L  +   SV+LIFADPPY +  N               +  D F + E Y  
Sbjct: 23  VLGDCLDILRSIEDNSVNLIFADPPYGIGKNFG-------------NDSDFFKNKEEYFD 69

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
           + + W+  C R+LK +GT++ + S   +  +   +   + + + + +    +        
Sbjct: 70  WAKKWIDECMRILKEDGTMYFMTSTQFMPFLD--MYVDDNYYVINRIIWTYDSSGVQAKT 127

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE-- 201
           +F + +E ++  + S K+K      D L   N   + +              +   G   
Sbjct: 128 KFGSLYEPILMVTHSKKSKYTFNYQDILIETNTGAKRKLIDYRKTPPQPYNTKKVPGNVW 187

Query: 202 ------------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
                       + HPTQKPE LL RI+++S+   DI+LDPF GS T+ AVA+KL R  I
Sbjct: 188 DFSRVRYRMEEYENHPTQKPEELLKRIILASSNENDIVLDPFSGSFTTSAVAQKLNRKTI 247

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELT 277
           GIE   +Y  I  +R+        ++L 
Sbjct: 248 GIETNLEYFKIGLRRLNITDEYNGVKLE 275


>gi|88854936|ref|ZP_01129602.1| DNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88816097|gb|EAR25953.1| DNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 286

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 114/273 (41%), Gaps = 20/273 (7%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-------------NGQLYRPDHSLVDA 67
           D +++G+++SV+  LP +S  LI+ DPP+N                 G       +  D 
Sbjct: 11  DLVVQGDNLSVISALPDESFRLIYIDPPFNTGRTQRRQALTTQRSAEGARTGFGGNTYDT 70

Query: 68  VTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
           +  +   +   F  Y  F    L    R+L   GTL++   Y  +      L  L     
Sbjct: 71  IKGALYSYDDTFADYWEFLEPRLHEAWRLLDDRGTLYLHLDYREVHYAKVALDALFGRES 130

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQM 180
                  +        +++ + H+T++    +PK   +         Y A      +   
Sbjct: 131 FLNEIIWAYDYGARATKKWPSKHDTILVYVKNPKNYYFNNEEVDREPYMAPGLVTPEKAA 190

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           R      +   +        +  + TQKPE +L RI+ +S++PGD +LD F GSGT+GAV
Sbjct: 191 RGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASSQPGDWVLDFFAGSGTTGAV 250

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           A+ L+R  + +E     I+I T+R++S     N
Sbjct: 251 AQALKRRVVLVEQNPAAIEIITRRLSSETAFAN 283


>gi|148269728|ref|YP_001244188.1| DNA methylase N-4/N-6 domain-containing protein [Thermotoga
           petrophila RKU-1]
 gi|170288403|ref|YP_001738641.1| DNA methylase N-4/N-6 domain-containing protein [Thermotoga sp.
           RQ2]
 gi|222099314|ref|YP_002533882.1| M4C-methyltransferase [Thermotoga neapolitana DSM 4359]
 gi|147735272|gb|ABQ46612.1| DNA methylase N-4/N-6 domain protein [Thermotoga petrophila RKU-1]
 gi|170175906|gb|ACB08958.1| DNA methylase N-4/N-6 domain protein [Thermotoga sp. RQ2]
 gi|221571704|gb|ACM22516.1| M4C-methyltransferase [Thermotoga neapolitana DSM 4359]
          Length = 308

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 99/269 (36%), Gaps = 39/269 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
               DK+I+G++  VL+K+P  S+ L+   PPYN+                     D+  
Sbjct: 51  ENLLDKVIEGDAREVLKKIPDCSIHLMVTSPPYNVGKEY-----------------DEDM 93

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY--------------HNIFRIGTMLQNLN 122
           + + Y  F    +    RVL   G      +               H   +IG +++   
Sbjct: 94  TLDEYLEFIEEIMKEVYRVLVWGGRACFNVANLGRKPYIPLHAYLIHLFEKIGFLIRGEI 153

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQ---NAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
            W   + V   S    ++         + HE +I  S     +    + +A      +  
Sbjct: 154 IWDKGEAVSGSSTAWGSWMSPVNPVLRDQHEYIIVMSKGDLKRRKPSDREAKSTITREEF 213

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           +            E  +       HP   PE L  R +   T  GD++LDPF G GT+  
Sbjct: 214 LE-FTRSVWKFPPESAK----RVGHPAPFPEELPYRCIQLYTFKGDVVLDPFAGVGTTCV 268

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            A K  R F+GIE+  +Y+  A +R+  +
Sbjct: 269 AAVKTGRHFVGIEINPEYVKKAEERVKDI 297


>gi|207742815|ref|YP_002259207.1| dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum IPO1609]
 gi|206594209|emb|CAQ61136.1| dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum IPO1609]
          Length = 272

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 27/250 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ + +L   SV+L+ ADPPY L  +      D   +             EA
Sbjct: 7   DGIFNEDCIAGIGQLADGSVNLVIADPPYGLGKDYG---NDSDKLSG-----------EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG++++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSVYLFCTWQYAPELFVMLKRRLA-MINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
             R+F + H+ + + + S                 T    + K       +   +     
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
               RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+     +  R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARRGRRF 231

Query: 249 IGIEMKQDYI 258
            G E+  +Y 
Sbjct: 232 AGFEINAEYC 241


>gi|227431774|ref|ZP_03913801.1| adenine-specific methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227352457|gb|EEJ42656.1| adenine-specific methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 231

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/248 (31%), Positives = 118/248 (47%), Gaps = 22/248 (8%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I GN++  L  +P  S+DLI  DPPYN+         + + +D     WDK +     
Sbjct: 2   KLINGNNLDALSDIPDNSIDLILTDPPYNISRKNNFESLNRAGIDF--GDWDKNADL--- 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                 W+    R++K   ++ +  ++ N+  I   L+   F + + I W K+NPMP  R
Sbjct: 57  ----LTWIDKVPRIVKKGASIIIFNAWRNLGDIAERLEKNGFVVKDIIRWEKTNPMPRNR 112

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            RR+   +E  IWA    K   + FN  + K    ++++          GS         
Sbjct: 113 DRRYIVDYEFAIWAV--EKHNKWIFNRQSNKYDRSEIRVPITGKAEKILGS--------- 161

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  L+  +L+  +   DI+LDPF GSG++G   + L R FIGIE+ + Y  IA
Sbjct: 162 --HPTQKPIKLMEELLLRHSNENDIVLDPFMGSGSTGVACRNLNREFIGIELDETYFKIA 219

Query: 262 TKRIASVQ 269
             RI   Q
Sbjct: 220 ENRIREAQ 227


>gi|317008767|gb|ADU79347.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           India7]
          Length = 277

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 103/263 (39%), Positives = 146/263 (55%), Gaps = 12/263 (4%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
           S + +  I ++Q+ +F     + +G+   VL +      DLIFADPPY L  +G L    
Sbjct: 6   SNETARPIFKSQDQLF----TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQS 59

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             +V      WDK       D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L
Sbjct: 60  GKIVSVNKGDWDKEDGINGIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGCILQKL 119

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
           +F ILN I W+K+NP PNF  R   ++ E +IWA  S K   + FNY+ LK  N+D QMR
Sbjct: 120 DFKILNLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINKDKQMR 178

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             W  P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A
Sbjct: 179 DVWSFPAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDKNSLIGDPFSGSSTTGIAA 233

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
             L+R FIGIE + ++I I+  R
Sbjct: 234 NLLKRQFIGIEKESEFIKISINR 256


>gi|207722999|ref|YP_002253422.1| dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum MolK2]
 gi|206588188|emb|CAQ18757.1| dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum MolK2]
          Length = 272

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 27/250 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ + +L   SV+L+ ADPPY L  +      D   +             EA
Sbjct: 7   DGIFNEDCIAGIGQLADGSVNLVIADPPYGLGKDYG---NDSDKLSG-----------EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG++++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSVYLFCTWQYAPELFVMLKRRLA-MINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
             R+F + H+ + + + S                 T    + K       +   +     
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
               RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+     +  R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARRGRRF 231

Query: 249 IGIEMKQDYI 258
            G E+  +Y 
Sbjct: 232 AGFEINAEYC 241


>gi|320104814|ref|YP_004180405.1| DNA methylase N-4/N-6 domain-containing protein [Isosphaera pallida
           ATCC 43644]
 gi|319752096|gb|ADV63856.1| DNA methylase N-4/N-6 domain protein [Isosphaera pallida ATCC
           43644]
          Length = 310

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 110/290 (37%), Gaps = 31/290 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQL--------------------NGQLYRPDH 62
           +  G+++ VL KLP +  DLI+ DPP+N                        G  YR   
Sbjct: 10  VYFGDNLDVLRKLPDQLADLIYIDPPFNTGKVQSRTQIRTIRSQEGDRVGFQGNRYRTIK 69

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 +D +D       + +F    L+   R+LK NGT +    Y  +     ML  + 
Sbjct: 70  VGTTGYSDRFDDG-----FLSFLEPRLIEAYRILKDNGTFYFHIDYREVHYCKLMLDQIF 124

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF------NYDALKAANE 176
                      +         ++   H+ ++    +P    + +       Y A      
Sbjct: 125 GRECFLNEVIWAYDYGARTKLKWPPKHDNILVYVKNPDNYVFNYEDIDRIPYMAPGLVGP 184

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
               +          +    N   +  +PTQKP  +L RI+ +S+  G I+LD F GSGT
Sbjct: 185 KKAEQGKPPTDTWWHTIVPTNGSEKTGYPTQKPLGILRRIVRASSPVGGIVLDFFAGSGT 244

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           +GA   +L R FI ++   D + + +KR   +  +  ++   L  + + P
Sbjct: 245 TGAACLELNRRFILVDNSVDALKVMSKRFDGISSVNWVDFDPLPYQTSFP 294


>gi|327539140|gb|EGF25770.1| adenine-specific methyltransferase [Rhodopirellula baltica WH47]
          Length = 608

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 126/351 (35%), Gaps = 60/351 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I   + I  + +LPA  +DL FADPP+N+     +Y              D     + Y
Sbjct: 14  QIHVSDCIDGMAELPAGCIDLAFADPPFNIGYTYDVY--------------DDSLESDEY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++ +W+    RVL  +G  W+         +  + Q + F   + ++W  +  +    
Sbjct: 60  IQWSESWIRGVHRVLADDGAFWLAIGDEYAAELKVLAQQIGFQCRSWVIWYYTFGV--HC 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA------------LKAANEDVQMRSDWLIPIC 189
             +F  +H  L       K   +  +  +             + AN   +M  D  I   
Sbjct: 118 KYKFTRSHAHLFHFVKDEKHFKFNADDPSVRVPSARQLVYNDRRANSKGRMPDDTWILRP 177

Query: 190 SGSERLRNKDGEKL---------------HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                    D +                 H  Q PE LL RI+ + + PGD +LDPF GS
Sbjct: 178 QDLPYGFTADEDIWYFPRVAGTFKERAGFHGCQMPEQLLGRIIRACSDPGDKVLDPFSGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
            T+ AVAKKL R FI  EM ++Y+ + T+R+  ++    +       +            
Sbjct: 238 ATTVAVAKKLGREFISFEMSEEYVSLGTERLEQIRVGDPLTGAADPLRSAPATNGKKNES 297

Query: 295 ERGLI-------------QPGQILTNAQGNISATVCADGTLISGTELGSIH 332
           +   +             Q G  L      + A    DG LI       IH
Sbjct: 298 KAEKLAREEEERQRWATQQVGPQLEFQFETMRA--MTDGELI--NAFREIH 344


>gi|32477674|ref|NP_870668.1| adenine-specific methyltransferase [Rhodopirellula baltica SH 1]
 gi|32448228|emb|CAD77745.1| adenine-specific methyltransferase [Rhodopirellula baltica SH 1]
          Length = 608

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 126/351 (35%), Gaps = 60/351 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I   + I  + +LPA  +DL FADPP+N+     +Y              D     + Y
Sbjct: 14  QIHVSDCIDGMAELPAGCIDLAFADPPFNIGYTYDVY--------------DDSLESDEY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++ +W+    RVL  +G  W+         +  + Q + F   + ++W  +  +    
Sbjct: 60  IQWSESWIRGVHRVLADDGAFWLAIGDEYAAELKVLAQQIGFQCRSWVIWYYTFGV--HC 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA------------LKAANEDVQMRSDWLIPIC 189
             +F  +H  L       K   +  +  +             + AN   +M  D  I   
Sbjct: 118 KYKFTRSHAHLFHFVKDEKHFKFNADDPSVRVPSARQLVYNDRRANSKGRMPDDTWILRP 177

Query: 190 SGSERLRNKDGEKL---------------HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                    D +                 H  Q PE LL RI+ + + PGD +LDPF GS
Sbjct: 178 QDLPYGFTADEDIWYFPRVAGTFKERAGFHGCQMPEQLLGRIIRACSDPGDKVLDPFSGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
            T+ AVAKKL R FI  EM ++Y+ + T+R+  ++    +       +            
Sbjct: 238 ATTVAVAKKLGREFISFEMSEEYVSLGTERLEQIRVGDPLTGAADPLRSAPATNGKKNES 297

Query: 295 ERGLI-------------QPGQILTNAQGNISATVCADGTLISGTELGSIH 332
           +   +             Q G  L      + A    DG LI       IH
Sbjct: 298 KAEKLAREEEERQRWATQQVGPQLEFQFETMRA--MTDGELI--NAFREIH 344


>gi|107026752|ref|YP_624263.1| DNA methylase N-4/N-6 [Burkholderia cenocepacia AU 1054]
 gi|116692056|ref|YP_837589.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|170735951|ref|YP_001777211.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|105896126|gb|ABF79290.1| DNA methylase N-4/N-6 [Burkholderia cenocepacia AU 1054]
 gi|116650056|gb|ABK10696.1| DNA methylase N-4/N-6 domain protein [Burkholderia cenocepacia
           HI2424]
 gi|169818139|gb|ACA92721.1| DNA methylase N-4/N-6 domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 283

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 27/261 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + ++    LP  S+DLI ADPPY L  +               +  DK  S + + 
Sbjct: 35  LHNRDFLTHAAYLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDDFL 80

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P      
Sbjct: 81  AWTRGWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLKTQ-LTMVNEIIWDRRVPSMGGTT 139

Query: 143 RRFQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RRF + H+ + + +                   T    + K       +   +       
Sbjct: 140 RRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWS 199

Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G
Sbjct: 200 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVG 259

Query: 251 IEMKQDYIDIATKRIASVQPL 271
            E+ + Y  IA +R++++   
Sbjct: 260 YEINESYCAIAHERVSALAAP 280


>gi|283783020|ref|YP_003373774.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
 gi|298253560|ref|ZP_06977350.1| DNA modification methylase [Gardnerella vaginalis 5-1]
 gi|283442049|gb|ADB14515.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
 gi|297532327|gb|EFH71215.1| DNA modification methylase [Gardnerella vaginalis 5-1]
          Length = 239

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 112/247 (45%), Gaps = 18/247 (7%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS---WDKFSSFE 79
           +   + I  ++ L AKS+DLI  DPPYNL    +    +   +     +   WD    FE
Sbjct: 6   LYNDDCIVAMDNLRAKSIDLIVTDPPYNLGSFMKTRDTNLKKMRDNFFAAAGWDDM-GFE 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +     ++     RV+K  G++ V  +   +  I  + +   F+     +W K+NPMP 
Sbjct: 65  EWKKSMESFFELSSRVMKKGGSMIVFMAIIKVETIIKLAEEYGFYYKTTGIWHKTNPMPR 124

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
                F N+ E  ++          T+        N            +   SER   K 
Sbjct: 125 NMNLHFVNSTEAWVYF---------TYKTKTGTFNNGGAMFHDFIETSVTPNSERKYGK- 174

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQKPE+L+   +   + PGD ILDPF GSGT+G V+K+  R+FIGIE+  +Y +
Sbjct: 175 ----HPTQKPESLMQHFVEILSNPGDNILDPFMGSGTTGVVSKRAGRNFIGIELNSEYYN 230

Query: 260 IATKRIA 266
           IA  RI 
Sbjct: 231 IAKSRIE 237


>gi|33337325|gb|AAQ13330.1| HpyIIIM protein [Helicobacter pylori]
          Length = 276

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 98/253 (38%), Positives = 136/253 (53%), Gaps = 8/253 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +      DLIFADPPY L  +G L      +V      WDK  S    
Sbjct: 22  TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNGI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+N  PNF 
Sbjct: 80  DEFNYQWISNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNHPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKANGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASGENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 253

Query: 262 TKRIASVQPLGNI 274
             R + +      
Sbjct: 254 MDRKSELDTRFKE 266


>gi|320535756|ref|ZP_08035839.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
 gi|320147387|gb|EFW38920.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
          Length = 252

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 117/252 (46%), Gaps = 27/252 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWD--KFSS 77
            +I G+    ++++P  S+DLI  DPPYNL     G +     + ++     WD   F  
Sbjct: 11  LLIHGDCFQKMKEIPDTSIDLILCDPPYNLAEYSTGNMKFDWRAEINNDVAEWDLITFDP 70

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +  + FT        R+LKP G +++  SY+ I +   +   +       +VW K+NP+
Sbjct: 71  QKLVEDFT--------RILKPKGNIFIFTSYNLIGKYHEIFNPIFDTF-QFMVWHKTNPI 121

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN R   F N+ E ++          ++              M +    PIC G ER++N
Sbjct: 122 PNVRKSSFLNSCELIVCLWNKGHTWNFSTQNQ----------MHNFIETPICMGKERIKN 171

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPTQKP A+L  I+  ++   DI+ DPF G G++G  A  L R F+GIE+ + Y
Sbjct: 172 PK----HPTQKPLAVLEHIIKIASNENDIVFDPFMGVGSTGHAALNLNRRFLGIEIDKKY 227

Query: 258 IDIATKRIASVQ 269
              A  R+   Q
Sbjct: 228 FAAACDRLTIFQ 239


>gi|301320551|gb|ADK69194.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 652

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 111/304 (36%), Gaps = 31/304 (10%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +++   + +  L++L   S+DL++ DPP+  Q    L    +       D W      +
Sbjct: 4   LNQVYNIDCLDGLKQLKDNSIDLVYLDPPFFTQKAHFLVDKTNKKY-FFNDIW---KDLK 59

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  F +  L+  +RVLK  G+++V         I  +L  +   I             +
Sbjct: 60  EYQEFLKIRLIEIKRVLKSTGSVFVHCDKTANHIIRVLLDEIFGSINFRSEIIWVYKRWS 119

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR------------------ 181
              +   ++H+ +   S +   K      D     N D  ++                  
Sbjct: 120 NSKKGLLDSHQNIYHYSKTNDFKFNVIYTDYSLTTNIDQILQLRVKDKNNKIVYKKDKNN 179

Query: 182 ---------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                       L  + +             +PTQKP  LL RI+   T   D++LDPF 
Sbjct: 180 NVVFSDLKKGVPLSDVWNIPFLNPKAKERTSYPTQKPIELLERIISLVTNENDVVLDPFV 239

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
           GSGTS   +K L R+FIG ++  D IDI  +R+ +     +  L     K          
Sbjct: 240 GSGTSVVASKLLNRNFIGFDINIDAIDITNQRLKNPIKSESNLLKNGIDKYDTKTKQQKQ 299

Query: 293 LVER 296
           ++ R
Sbjct: 300 ILSR 303


>gi|33337323|gb|AAQ13329.1| HpyIIIM protein [Helicobacter pylori]
          Length = 277

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 98/253 (38%), Positives = 138/253 (54%), Gaps = 8/253 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +      DLIFADPPY L  +G L      +V      WDK    +  
Sbjct: 22  TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEDGIDDI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E++  K   
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L++ FIGIE + ++I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKKQFIGIEKESEFIQIS 253

Query: 262 TKRIASVQPLGNI 274
             R + +      
Sbjct: 254 MNRKSELDARFKE 266


>gi|184200490|ref|YP_001854697.1| putative methyltransferase [Kocuria rhizophila DC2201]
 gi|183580720|dbj|BAG29191.1| putative methyltransferase [Kocuria rhizophila DC2201]
          Length = 289

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 108/270 (40%), Gaps = 32/270 (11%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF------- 75
           I+ G +++VLE LP +S  L++ DPP+N   +          V         F       
Sbjct: 17  IVHGENLTVLESLPDESFSLVYLDPPFNTGRDQVRRTTRSVPVAHGEGDRVGFAGRSYET 76

Query: 76  ---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                     SF  Y  F    L   RRVL  +GTL+V   Y  +  +  +L  +     
Sbjct: 77  IMGSLRRYEDSFADYLGFLEPRLAHARRVLARHGTLYVHLDYREVHYVKVLLDAMFGREC 136

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----------- 175
                  +        RR+   H+T++     P A  +       +              
Sbjct: 137 FLNEIVWAYDFGGRTTRRWPAKHDTILVYVKDPAAYHFNSQDVDREPYMAPGLVGPEKAA 196

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                   W   I S + R      +  +PTQKP  +L RI+ +S++PGD +LD F GSG
Sbjct: 197 RGKLPTDVWWHTIVSPTGR-----EKTGYPTQKPAGVLRRIVTASSRPGDWVLDFFAGSG 251

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+GAV+ +L R F+ ++   + +++   R+
Sbjct: 252 TTGAVSAELGRRFVCVDSNPEAVEVMRLRL 281


>gi|186473194|ref|YP_001860536.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184195526|gb|ACC73490.1| DNA methylase N-4/N-6 domain protein [Burkholderia phymatum STM815]
          Length = 305

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 117/264 (44%), Gaps = 27/264 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++    LP  S+DLI ADPPY L  +               +  D   S E +
Sbjct: 41  QLLNRDFLTDAANLPDGSIDLIVADPPYGLGKDYG-------------NDSD-MRSGEDF 86

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TRAWL      LKP+G+L++  ++     I   L+     ++N+I+W +  P     
Sbjct: 87  LAWTRAWLDLAIPKLKPSGSLYIFCTWQYAPEIFVFLKRRLL-MVNEIIWDRRVPSMGGT 145

Query: 142 GRRFQNAHETLIWASPSPKAKG-----------YTFNYDALKAANEDVQMRSDWLIPICS 190
            RRF + H+ + + + S                 T    + K       +   +      
Sbjct: 146 TRRFTSVHDNIGYFAVSKDYYFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPKDVW 205

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+
Sbjct: 206 SVSRLHRQHAERVDHPTQKPLEIVERMVLASCPPGGRVLDPFMGSGTTAVACARQTREFV 265

Query: 250 GIEMKQDYIDIATKRIASVQPLGN 273
           G E+ + Y  IA +R++       
Sbjct: 266 GYEINESYCAIARERVSLAANPPP 289


>gi|108562518|ref|YP_626834.1| type II adenine methyltransferase [Helicobacter pylori HPAG1]
 gi|107836291|gb|ABF84160.1| type II adenine methyltransferase [Helicobacter pylori HPAG1]
          Length = 273

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      +V      WDK +     
Sbjct: 19  TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINDI 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 77  DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLITWQKTNPPPNFS 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QM   W  P  +  E++  K   
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMHDVWSFPAIAPWEKVNGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L R FIGIE + ++I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLNREFIGIEKESEFIKIS 250

Query: 262 TKR 264
             R
Sbjct: 251 MDR 253


>gi|307726598|ref|YP_003909811.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307587123|gb|ADN60520.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1003]
          Length = 303

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 123/279 (44%), Gaps = 27/279 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L  +               +  D   S + +
Sbjct: 39  QLLNRDFLTDVANIPDGSIDLILCDPPYGLGKDYG-------------NDSD-MRSGDDF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LAWTRGWLELAVPKLKPSGSLYIFCTWQYAPEIFSFLKTKLV-MINEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICS 190
            RRF + H+ + + + S                 T    + K       +   +      
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYYFDLDPVRIPYDAATKKARSRKLFEGSKWLELGYNPKDVW 203

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              RL  +  E++ HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R F+
Sbjct: 204 SVSRLHRQHAERVDHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 263

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           G E+ + Y  IA +R+++          V    + +P V
Sbjct: 264 GYEINESYCAIARERVSAAAAAPAGRAPVKARAQRQPEV 302


>gi|83716900|ref|YP_438879.1| N-6 adenine-specific DNA methylase [Burkholderia thailandensis
           E264]
 gi|83650725|gb|ABC34789.1| N-6 adenine-specific DNA methylase [Burkholderia thailandensis
           E264]
          Length = 259

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 27/262 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + +     LP  S+DLI ADPPY L  +               +  DK  S + + 
Sbjct: 8   LHNRDFLHEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 53

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+TR WL      LK  G+++V  ++     I + L+     ++N+I+W +  P      
Sbjct: 54  AWTREWLELAIPKLKSTGSMYVFCTWQYAPEIFSFLKTR-LTMINEIIWDRRVPSMGGTT 112

Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
           RRF + H+ + + + S                 T    + K       +   +       
Sbjct: 113 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWS 172

Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G
Sbjct: 173 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVG 232

Query: 251 IEMKQDYIDIATKRIASVQPLG 272
            E+ + Y  IA +R+AS+  + 
Sbjct: 233 YEINESYCAIARERVASLAAVP 254


>gi|33337331|gb|AAQ13333.1| HpyIIIM protein [Helicobacter pylori]
          Length = 274

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 97/253 (38%), Positives = 138/253 (54%), Gaps = 8/253 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +      DLIFADPPY L  +G L   +  +V      WDK  S    
Sbjct: 19  TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQNGKIVSVNKGDWDKEESVNDI 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 77  DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E++  K   
Sbjct: 137 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
              PTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + +++ I+
Sbjct: 193 --RPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 250

Query: 262 TKRIASVQPLGNI 274
             R + +      
Sbjct: 251 MDRKSELDARFKE 263


>gi|300703719|ref|YP_003745321.1| site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum CFBP2957]
 gi|299071382|emb|CBJ42701.1| Site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum CFBP2957]
          Length = 272

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 27/250 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ + +L   SV+L+ ADPPY L  +      D   +             EA
Sbjct: 7   DGIFNEDCIAGIGQLADGSVNLVIADPPYGLGKDYG---NDSDKLSG-----------EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG++++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSVYLFCTWQYAPELFVMLKRRLA-MINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
             R+F + H+ + + + S                 T    + K       +   +     
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
               RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+     +  R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARRGRRF 231

Query: 249 IGIEMKQDYI 258
            G E+  +Y 
Sbjct: 232 AGFEINAEYC 241


>gi|320108417|ref|YP_004184007.1| DNA methylase N-4/N-6 domain-containing protein [Terriglobus
           saanensis SP1PR4]
 gi|319926938|gb|ADV84013.1| DNA methylase N-4/N-6 domain protein [Terriglobus saanensis SP1PR4]
          Length = 278

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 110/270 (40%), Gaps = 25/270 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--------PDHSLVDAVTDSWD 73
           +++   ++  L+ LP++SVDLI+ DPP+N     +  R         D +         +
Sbjct: 10  QVVHAENLGFLQTLPSESVDLIYIDPPFNTGRVQKRTRMKTVRDEAGDRTGFGGARYRTE 69

Query: 74  K-------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
           K         +F+ +  F R  L    R+LKP+G L+             ML  +     
Sbjct: 70  KLAEAAAYEDTFDDFLGFIRPRLEEAYRILKPHGALFFHIDPRESHYCKVMLDQIFTRPC 129

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE--------DV 178
                  +        +R+   H+T++W +       YTFN  A              + 
Sbjct: 130 FQNEIIWAYDYGARSTKRWPGKHDTILWYTKH--PTKYTFNLAACDRIEYMAPTLVGAEK 187

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             R      +   +        +  +PTQKP  +L+RI+   TKP D +LD F GSGT+G
Sbjct: 188 AARGKTPTDVWWHTIVSPTGKEKTGYPTQKPLGVLNRIVKVHTKPKDTVLDFFAGSGTTG 247

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
             A K +R FI ++  ++ + I  KR+A  
Sbjct: 248 EAAAKNKRRFILVDQSEEAVGIMQKRLAKY 277


>gi|167820636|ref|ZP_02452316.1| DNA modification methylase RsrI [Burkholderia pseudomallei 91]
          Length = 281

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/258 (26%), Positives = 116/258 (44%), Gaps = 26/258 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + +     LP  S+DLI ADPPY L  +               +  DK  S + + 
Sbjct: 31  LHNRDFLHEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 76

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+TR WL      LK  G+++V  ++     I + L+     ++N+I+W +  P      
Sbjct: 77  AWTREWLELAVPKLKSTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 135

Query: 143 RRFQNAHETLIWA--SPSPK------AKGYTFNYDALKA--ANEDVQMRSDWLIPICSGS 192
           RRF + H+ + +   S             Y  +    ++    E  +             
Sbjct: 136 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNQDVWSV 195

Query: 193 ERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G 
Sbjct: 196 SRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRGFVGY 255

Query: 252 EMKQDYIDIATKRIASVQ 269
           E+ + Y  IA +R+AS+ 
Sbjct: 256 EINESYCAIARERVASLA 273


>gi|53716177|ref|YP_106283.1| N-6 adenine-specific DNA methylase [Burkholderia mallei ATCC 23344]
 gi|53722718|ref|YP_111703.1| modification methylase [Burkholderia pseudomallei K96243]
 gi|67640710|ref|ZP_00439507.1| DNA modification methylase RsrI [Burkholderia mallei GB8 horse 4]
 gi|121596899|ref|YP_991244.1| N-6 adenine-specific DNA methylase [Burkholderia mallei SAVP1]
 gi|124382898|ref|YP_001025656.1| N-6 adenine-specific DNA methylase [Burkholderia mallei NCTC 10229]
 gi|126445073|ref|YP_001063438.1| DNA modification methylase RsrI [Burkholderia pseudomallei 668]
 gi|126446610|ref|YP_001077731.1| DNA modification methylase RsrI [Burkholderia mallei NCTC 10247]
 gi|126458257|ref|YP_001076339.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106a]
 gi|134278482|ref|ZP_01765196.1| DNA modification methylase RsrI [Burkholderia pseudomallei 305]
 gi|166999488|ref|ZP_02265327.1| DNA modification methylase RsrI [Burkholderia mallei PRL-20]
 gi|167828995|ref|ZP_02460466.1| DNA modification methylase RsrI [Burkholderia pseudomallei 9]
 gi|167850471|ref|ZP_02475979.1| DNA modification methylase RsrI [Burkholderia pseudomallei B7210]
 gi|167899065|ref|ZP_02486466.1| DNA modification methylase RsrI [Burkholderia pseudomallei 7894]
 gi|167915749|ref|ZP_02502840.1| DNA modification methylase RsrI [Burkholderia pseudomallei 112]
 gi|167923589|ref|ZP_02510680.1| DNA modification methylase RsrI [Burkholderia pseudomallei BCC215]
 gi|217422579|ref|ZP_03454082.1| DNA modification methylase RsrI [Burkholderia pseudomallei 576]
 gi|226195794|ref|ZP_03791381.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pakistan
           9]
 gi|237508464|ref|ZP_04521179.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           MSHR346]
 gi|242312128|ref|ZP_04811145.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106b]
 gi|254176235|ref|ZP_04882893.1| DNA modification methylase RsrI [Burkholderia mallei ATCC 10399]
 gi|254186233|ref|ZP_04892751.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193634|ref|ZP_04900066.1| DNA modification methylase RsrI [Burkholderia pseudomallei S13]
 gi|254201165|ref|ZP_04907530.1| DNA modification methylase RsrI [Burkholderia mallei FMH]
 gi|254205137|ref|ZP_04911490.1| DNA modification methylase RsrI [Burkholderia mallei JHU]
 gi|254265092|ref|ZP_04955957.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1710a]
 gi|254301281|ref|ZP_04968725.1| DNA modification methylase RsrI [Burkholderia pseudomallei 406e]
 gi|254359264|ref|ZP_04975536.1| DNA modification methylase RsrI [Burkholderia mallei 2002721280]
 gi|52213132|emb|CAH39171.1| putative modification methylase [Burkholderia pseudomallei K96243]
 gi|52422147|gb|AAU45717.1| N-6 adenine-specific DNA methylase [Burkholderia mallei ATCC 23344]
 gi|121224697|gb|ABM48228.1| N-6 adenine-specific DNA methylase [Burkholderia mallei SAVP1]
 gi|126224564|gb|ABN88069.1| DNA modification methylase RsrI [Burkholderia pseudomallei 668]
 gi|126232025|gb|ABN95438.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106a]
 gi|126239464|gb|ABO02576.1| DNA modification methylase RsrI [Burkholderia mallei NCTC 10247]
 gi|134250266|gb|EBA50346.1| DNA modification methylase RsrI [Burkholderia pseudomallei 305]
 gi|147748777|gb|EDK55852.1| DNA modification methylase RsrI [Burkholderia mallei FMH]
 gi|147754723|gb|EDK61787.1| DNA modification methylase RsrI [Burkholderia mallei JHU]
 gi|148028451|gb|EDK86411.1| DNA modification methylase RsrI [Burkholderia mallei 2002721280]
 gi|157811304|gb|EDO88474.1| DNA modification methylase RsrI [Burkholderia pseudomallei 406e]
 gi|157933919|gb|EDO89589.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pasteur
           52237]
 gi|160697277|gb|EDP87247.1| DNA modification methylase RsrI [Burkholderia mallei ATCC 10399]
 gi|169650385|gb|EDS83078.1| DNA modification methylase RsrI [Burkholderia pseudomallei S13]
 gi|217394810|gb|EEC34829.1| DNA modification methylase RsrI [Burkholderia pseudomallei 576]
 gi|225932279|gb|EEH28279.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pakistan
           9]
 gi|235000669|gb|EEP50093.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           MSHR346]
 gi|238521481|gb|EEP84932.1| DNA modification methylase RsrI [Burkholderia mallei GB8 horse 4]
 gi|242135367|gb|EES21770.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106b]
 gi|243064538|gb|EES46724.1| DNA modification methylase RsrI [Burkholderia mallei PRL-20]
 gi|254216094|gb|EET05479.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1710a]
 gi|261827031|gb|ABM99404.2| DNA modification methylase RsrI [Burkholderia mallei NCTC 10229]
          Length = 282

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 27/259 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + +     LP  S+DLI ADPPY L  +               +  DK  S + + 
Sbjct: 31  LHNRDFLHEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 76

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+TR WL      LK  G+++V  ++     I + L+     ++N+I+W +  P      
Sbjct: 77  AWTREWLELAVPKLKSTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 135

Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
           RRF + H+ + + + S                 T    + K       +   +       
Sbjct: 136 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWS 195

Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G
Sbjct: 196 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRGFVG 255

Query: 251 IEMKQDYIDIATKRIASVQ 269
            E+ + Y  IA +R+AS+ 
Sbjct: 256 YEINESYCAIARERVASLA 274


>gi|217032871|ref|ZP_03438349.1| hypothetical protein HPB128_1g8 [Helicobacter pylori B128]
 gi|216945411|gb|EEC24077.1| hypothetical protein HPB128_1g8 [Helicobacter pylori B128]
          Length = 274

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 136/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      +V      WDK       
Sbjct: 19  TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEDGVNGI 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 77  DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLITWQKTNPPPNFS 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E++  K   
Sbjct: 137 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + ++I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFIKIS 250

Query: 262 TKR 264
             R
Sbjct: 251 INR 253


>gi|317012153|gb|ADU82761.1| DNA methylase [Helicobacter pylori Lithuania75]
          Length = 372

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 104/274 (37%), Gaps = 22/274 (8%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I  + ++I   +S+  L+KLP   +D++   PPYN  +N    +   
Sbjct: 105 ESYKKEFSKETNEIQSYLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQD-- 162

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                  D W      + Y     +    C RVLK  G + V         I T      
Sbjct: 163 ------ADLW------QEYFNTLFSIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
           F+I   ++W+        N+  +           A     +  +   +       E    
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKN 270

Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            + +  D       G      +   K   H    PE L+ R L   +   DI+LDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIVLDPFNGA 330

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GT+  VAK+L R FIGI++ + Y ++A +R+   
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVAKERLKET 364


>gi|208434055|ref|YP_002265721.1| typeII adenine methyltransferase [Helicobacter pylori G27]
 gi|208431984|gb|ACI26855.1| typeII adenine methyltransferase [Helicobacter pylori G27]
          Length = 277

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 137/243 (56%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      +V      WDK +     
Sbjct: 22  TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINDI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E++  K   
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + ++I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFIGIEKESEFIKIS 253

Query: 262 TKR 264
             R
Sbjct: 254 MDR 256


>gi|315586126|gb|ADU40507.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 35A]
          Length = 276

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 134/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +      DLIFADPPY L  +G L      +V      WDK  S    
Sbjct: 22  TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRVLQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QM   W  P  +  E+   K   
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMHDVWSFPAIAPWEKTNGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + ++I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFIQIS 253

Query: 262 TKR 264
             R
Sbjct: 254 MNR 256


>gi|320537687|ref|ZP_08037615.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
 gi|320145465|gb|EFW37153.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
          Length = 228

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 35/245 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+ +  L K+P +S+  I  DPPY L +     +               F+      
Sbjct: 9   LLHGDCLDFLPKIPDESIQSIITDPPYFLGMTHNSQK-------------GCFNDLAICK 55

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F        +R+LKP+G ++    + +      +L ++       +  +   P  N  G
Sbjct: 56  PFYEKLFKEYKRILKPDGCIYFFCDWRSYAFYYPLLDSVMQVKNLLVWKKHGRPSLNVYG 115

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
                    LI  S   K    T   D + + N                    R  +GEK
Sbjct: 116 SGH-----ELIMFSGKIKKSYITNIIDDVASFNIG-----------------ARKTNGEK 153

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP  L+ + +  ST  GD++LD F GSGT+G       R FIG+E+  +Y +IA 
Sbjct: 154 IHPTQKPIELMEKFIFDSTDEGDVVLDSFMGSGTTGIACLNTNRRFIGMEIDDNYFNIAK 213

Query: 263 KRIAS 267
            R+ +
Sbjct: 214 NRLET 218


>gi|261838963|gb|ACX98728.1| typeII adenine methyltransferase [Helicobacter pylori 52]
          Length = 277

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   +L +      DLIFADPPY L  +G L      +V      WDK  S    
Sbjct: 22  TLYQGDCNEILPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEILKKINNDKQMRDVWSFPAIAPWEKANGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 253

Query: 262 TKR 264
             R
Sbjct: 254 MDR 256


>gi|317179480|dbj|BAJ57268.1| Type II restriction enzyme M protein [Helicobacter pylori F30]
          Length = 276

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +      DLIFADPPY L  +G L      +V      WDK  S    
Sbjct: 22  TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRVLQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKTNGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 253

Query: 262 TKR 264
             R
Sbjct: 254 MDR 256


>gi|298736964|ref|YP_003729494.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           pylori B8]
 gi|298356158|emb|CBI67030.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           pylori B8]
          Length = 304

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 136/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      +V      WDK       
Sbjct: 49  TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEDGVNGI 106

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 107 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLITWQKTNPPPNFS 166

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E++  K   
Sbjct: 167 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 222

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + ++I I+
Sbjct: 223 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFIKIS 280

Query: 262 TKR 264
             R
Sbjct: 281 INR 283


>gi|187921472|ref|YP_001890504.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gi|187719910|gb|ACD21133.1| DNA methylase N-4/N-6 domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 301

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 120/274 (43%), Gaps = 27/274 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L  +               +  D   + E +
Sbjct: 38  QLLNRDFLTDVANIPDGSIDLIVCDPPYGLGKDYG-------------NDSD-MRTGEDF 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 84  LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGT 142

Query: 142 GRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICS 190
            RRF + H+ + + + S                 T    + K       +   +      
Sbjct: 143 VRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAATKKARSRKLFEGSKWLEVGYNPKDVW 202

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              RL  +  E++ HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R F+
Sbjct: 203 SVSRLHRQHAERVAHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 262

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           G E+ + Y  IA +R+++              +R
Sbjct: 263 GYEINESYCAIARERVSAAANPPVARRVKAKTQR 296


>gi|218514040|ref|ZP_03510880.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli 8C-3]
          Length = 131

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 84/109 (77%), Positives = 94/109 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23  WIDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILN
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILN 131


>gi|284041579|ref|YP_003391919.1| DNA methylase N-4/N-6 domain protein [Conexibacter woesei DSM
           14684]
 gi|283945800|gb|ADB48544.1| DNA methylase N-4/N-6 domain protein [Conexibacter woesei DSM
           14684]
          Length = 287

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 106/266 (39%), Gaps = 20/266 (7%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY--------RPDHSLVDAVT-- 69
           +D ++ G+++ VL  LP  + D+I+ DPP+N     +            D +        
Sbjct: 18  EDLVVHGDNLDVLPLLPDGAFDMIYIDPPFNTGKAQRRRTLVFEPDVEGDRTGFGGRRYR 77

Query: 70  ----DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
                +     +F+ Y  F    L   RR+L  +GTL+    Y        +L  +    
Sbjct: 78  SQLLQALAYGDTFDDYLGFVAPRLEHARRLLAEHGTLYFHIDYREAHYCKLLLDEIFGRD 137

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQ 179
                   +         R+   H+T++    +P A  +         Y A      +  
Sbjct: 138 CFLNEIIWAYDYGGKPRSRWPAKHDTILVYVRTPGAHHFDAEAVDREPYMAPGLVTPEKV 197

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
            R      +   +    N   +  +PTQKP  ++ R++ +S++PG   LD F GSGT GA
Sbjct: 198 ARGKRPTDVWWHTIVPTNGYEKTGYPTQKPAGVVRRMVAASSRPGGWCLDFFAGSGTLGA 257

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRI 265
           VA  L R ++ ++   + ID+  KR+
Sbjct: 258 VAAGLGRRYVLVDSHAEAIDVMRKRL 283


>gi|33337329|gb|AAQ13332.1| HpyIIIM protein [Helicobacter pylori]
          Length = 274

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 134/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +      DLIFADPPY L  +G L      +V      WDK  S    
Sbjct: 19  TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L +  +YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 77  DEFNYQWINNAKKALKNTGSLLISRTYHNIFSLGRVLQKLDFKILNLITWQKTNPPPNFS 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKANGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + +++ I+
Sbjct: 193 --HPTQKPLALLVRLLLMASGENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 250

Query: 262 TKR 264
             R
Sbjct: 251 MDR 253


>gi|332672934|gb|AEE69751.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 273

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 97/243 (39%), Positives = 136/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      +V      WDK    +  
Sbjct: 19  TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LNIQSGKIVSVNKGDWDKEYGIDDI 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +  +LQ L+F ILN I W+K+NP PNF 
Sbjct: 77  DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLRRLLQKLDFKILNLITWQKTNPPPNFS 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E++  K   
Sbjct: 137 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + +++ I+
Sbjct: 193 --HPTQKPLALLVRLLLMASGENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 250

Query: 262 TKR 264
             R
Sbjct: 251 MDR 253


>gi|299141019|ref|ZP_07034157.1| methyltransferase [Prevotella oris C735]
 gi|298577985|gb|EFI49853.1| methyltransferase [Prevotella oris C735]
          Length = 340

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 118/289 (40%), Gaps = 42/289 (14%)

Query: 1   MSQKNSLAINENQNSIFEWK-----DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
           +S    + +    NSI + K     D I+ G+ +  L  +P +  +LI  DPPYNL  + 
Sbjct: 36  ISGGERMLLQSKVNSIEDLKSGLFDDVIVHGDLLDCLGLIPDEYFNLIVIDPPYNLDKDF 95

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
              R          D             + R+W       L+P+G+L++ G +     + 
Sbjct: 96  NGNRFSAMKSAGYED-------------YLRSWFGQVCDKLRPDGSLYMCGDWKCSASMQ 142

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRG--RRFQNAHETLIWASPSPKAKGYTFN------ 167
            ++          ++ R +      RG    ++N  E + +A  +PK   +  +      
Sbjct: 143 RVI-----EERLTVINRITWQREKGRGARMNWKNGMEDIWFAVKNPKDYYFNIDAVKVKR 197

Query: 168 -----------YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
                          + + +     +         S    +      HPTQKPE L +++
Sbjct: 198 RVRAPYRIEGQPKDWEQSEDGKYRFTCPSNFWDDISVPFWSMPENTEHPTQKPEKLYAKL 257

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           L++S+K GD + DPF GSGT   VA+KL R F G+E+ ++Y   A KR+
Sbjct: 258 LLASSKSGDRVFDPFLGSGTLAVVARKLNRKFCGVEINEEYCLWAAKRL 306


>gi|281424234|ref|ZP_06255147.1| putative DNA-methyltransferase protein [Prevotella oris F0302]
 gi|281401503|gb|EFB32334.1| putative DNA-methyltransferase protein [Prevotella oris F0302]
          Length = 337

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 42/289 (14%)

Query: 1   MSQKNSLAINENQNSIFEWK-----DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
           +S    + +    NSI + K     D I+ G+ +  L  +P +  +LI  DPPYNL  + 
Sbjct: 33  ISGGERMLLQSKVNSIEDLKSGLFDDVIVHGDLLDCLGLIPDEYFNLIVIDPPYNLDKDF 92

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
              R          D             + R+W       L+P+G L++ G +     + 
Sbjct: 93  NGNRFSAMKSAGYED-------------YLRSWFGQVCDKLRPDGALYMCGDWKCSASMQ 139

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRG--RRFQNAHETLIWASPSPKAKGYTFN------ 167
            ++          ++ R +      RG    ++N  E + +A  +PK   +  +      
Sbjct: 140 RVI-----EERLTVINRITWQREKGRGARMNWKNGMEDIWFAVKNPKDYYFNIDAVKVKR 194

Query: 168 -----------YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
                          + + +     +         S    +      HPTQKPE L +++
Sbjct: 195 RVRAPYRIEGQPKDWEQSEDGKYRFTCPSNFWDDISVPFWSMPENTEHPTQKPEKLYAKL 254

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           L++S+K GD + DPF GSGT   VA+KL R F G+E+ ++Y   A KR+
Sbjct: 255 LLASSKSGDRVFDPFLGSGTLAVVARKLNRKFCGVEINKEYCLWAAKRL 303


>gi|217034170|ref|ZP_03439589.1| hypothetical protein HP9810_886g7 [Helicobacter pylori 98-10]
 gi|216943338|gb|EEC22797.1| hypothetical protein HP9810_886g7 [Helicobacter pylori 98-10]
          Length = 276

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 96/253 (37%), Positives = 137/253 (54%), Gaps = 8/253 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   +L +      DLIFADPPY L  +G L      +V      WDK  S    
Sbjct: 22  TLYQGDCNEILPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N + QMR  W  P  +  E+   K   
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEILKKINNNKQMRDVWSFPAIAPWEKANGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 253

Query: 262 TKRIASVQPLGNI 274
             R + +      
Sbjct: 254 MDRKSELDARFKE 266


>gi|154149830|ref|YP_001403448.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153998382|gb|ABS54805.1| DNA methylase N-4/N-6 domain protein [Methanoregula boonei 6A8]
          Length = 292

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 108/277 (38%), Gaps = 25/277 (9%)

Query: 2   SQKNSLAINENQN-SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           S+     +   +N  I  + ++I  G+++SVL  +P++SVDL+   PPYN          
Sbjct: 19  SKDAKAPLPSRENPEIEPFVNRIFCGDALSVLSGMPSESVDLVITSPPYNFGHAYAQDPH 78

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSY---HNIF 112
           D +        W+       Y A   A    C RVL+P G + V        Y   H+I 
Sbjct: 79  DDTR------EWN------DYFATLNAVWTECVRVLRPGGRMAVNVQPLFSDYVPTHHII 126

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
               +   L +           N      G     +   + +     +      +    +
Sbjct: 127 SNQLLGLGLLWKAEFLWEKNNYNAKYTAWGSWKSPSMPYIKYTWEFVEIFDKGTHKKTGR 186

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDP 230
              ED+ + SD       G  ++  +   K   HP   PE L  R++   +   DI++DP
Sbjct: 187 R--EDIDITSDEFKEWVIGRWKIPPEHRMKEFDHPAMFPEELPRRVMKLFSYKNDIVIDP 244

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           F G+GT+   A K  R FIGI++   Y D A +R+  
Sbjct: 245 FNGAGTTTLAAAKCGRRFIGIDVSHQYCDTAVRRLRE 281


>gi|320103609|ref|YP_004179200.1| DNA methylase N-4/N-6 domain-containing protein [Isosphaera pallida
           ATCC 43644]
 gi|319750891|gb|ADV62651.1| DNA methylase N-4/N-6 domain protein [Isosphaera pallida ATCC
           43644]
          Length = 327

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 68/268 (25%), Positives = 116/268 (43%), Gaps = 42/268 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G++I+ L +L A SVDLI ADPPYNLQ                   WD+F++ EAY 
Sbjct: 55  LVTGDAIAWLNQLDAASVDLIVADPPYNLQKA----------------KWDRFATEEAYL 98

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            ++  W+ A RRVLK  G+L+V G    +  +              +   ++       G
Sbjct: 99  TWSLEWIAAARRVLKETGSLYVCGFSETLADLKRPALRWFADCRWLVWHYRNKA---NLG 155

Query: 143 RRFQNAHETLIW---------------ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           R +  +HE+++                         Y     A  +   D + R+ W+  
Sbjct: 156 RDWGRSHESILHLRVTPAFRLRLDAVRVPYGGHTVKYPARTQARTSCFGDGRSRAPWVPH 215

Query: 188 ICSGSER--------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                 R                 HP+QKPE L+  ++++++   D+++DPF GSGT+  
Sbjct: 216 PAGAKPRDVLEYPTTCNGMGERTPHPSQKPEGLIRHLILAASDEHDLVIDPFSGSGTTVV 275

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            A++L R +IG + +  Y   A +R+ +
Sbjct: 276 AAQQLNRRWIGCDREPSYHAWAVRRLET 303


>gi|148655960|ref|YP_001276165.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148568070|gb|ABQ90215.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 460

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 116/296 (39%), Gaps = 48/296 (16%)

Query: 21  DKIIKGNSISVLEKLPAK----SVDLIFADPPYNLQLN---------GQLYRPDHSLVDA 67
           + +I G +++ L  L A      ++LI+ DPP+   ++             R        
Sbjct: 46  NMLIHGENLAALTWLLANGYRQRINLIYIDPPFGAGIDRVRRIRLRGSDSARLIPVPNAE 105

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
             D+WD     +AY  F    L+A R +L  +G++++   +     +  ++  +      
Sbjct: 106 YRDTWDD----DAYLQFMYERLIALRDLLADDGSIYLHCDFRKAHLLRCLMDEVFGAERM 161

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA--------KGYTFNYDALKAANEDVQ 179
                   P      R+F   H+T++  + S +           YT    A     ++  
Sbjct: 162 LNEIIWFYPSGGDGERQFNRKHDTILLYARSDRWTFNYDQVLIPYTQQQLARFRQADE-- 219

Query: 180 MRSDWLIPICSGSERLRNKDGEKL--------------------HPTQKPEALLSRILVS 219
               +   +    ER++    +                      +PT KP ALL RI+ +
Sbjct: 220 -HGRYYWNVNPRGERVKTYLRKPGVGAYDVWTIPINAALVRDLGYPTTKPPALLDRIVRA 278

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           S++PGD++LD F GSGT+  VA++L R +I  ++    I I  +R+  +    +  
Sbjct: 279 SSRPGDLVLDCFAGSGTTAVVAQQLGRRWIACDVNPGAIQITARRLRRMPQPRDPA 334


>gi|87042330|gb|ABD16204.1| M1.NcuI methyltransferase [Moraxella cuniculi]
          Length = 259

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 103/270 (38%), Gaps = 37/270 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   N    LEK+  KS+ L   DPPYNL                    WD F     
Sbjct: 4   NKIYHMNCFDFLEKIQNKSIQLAVIDPPYNLNKA----------------DWDSFDDHNE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           + AFT  W+      L  NG++++  +  N   I   L +      N I W K + M + 
Sbjct: 48  FLAFTYRWIDKVLDKLDKNGSIYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMGSA 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYT---------------------FNYDALKAANEDVQ 179
           + R        L ++        Y                       N            
Sbjct: 108 KRRFSTGQETILFFSKSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGQRWFPNPNGRL 167

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               W        E++  K  +  H T KP  L+ RI+ +S+ P D++LD F GSGT+  
Sbjct: 168 CGEVWHFSSQRHKEKVNGKTVKLSHITPKPHDLIERIIKASSNPNDLVLDCFMGSGTTAI 227

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           VAKKL R+FIG ++  +Y++ A   +  ++
Sbjct: 228 VAKKLGRNFIGCDINTEYVEQANLILNQLE 257


>gi|209518946|ref|ZP_03267756.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. H160]
 gi|209500598|gb|EEA00644.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. H160]
          Length = 304

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/273 (23%), Positives = 117/273 (42%), Gaps = 27/273 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L  +               +  D   + E +
Sbjct: 39  QLLNRDFLTDVANIPDGSIDLIVCDPPYGLGKDYG-------------NDSD-MRTGEEF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +TR WL      LKP G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LVWTRGWLELAVPKLKPTGSLYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAKG-----------YTFNYDALKAANEDVQMRSDWLIPICS 190
            RRF + H+ + + + S                 T    + K       +   +      
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPKDVW 203

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              RL  +  E++ HPTQKP  ++ R+++SS   G  +LDPF GSGT+     + +R F+
Sbjct: 204 SVSRLHRQHAERVAHPTQKPLEIVERMVLSSCPKGGRVLDPFMGSGTTAVACVRHQREFV 263

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           G E+ + Y  IA +R++          T    K
Sbjct: 264 GYEINESYCAIARERVSVAAMPAAPRRTRAKPK 296


>gi|238024260|ref|YP_002908492.1| DNA modification methylase [Burkholderia glumae BGR1]
 gi|237878925|gb|ACR31257.1| DNA modification methylase [Burkholderia glumae BGR1]
          Length = 282

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 115/252 (45%), Gaps = 29/252 (11%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + ++    LP  S+DLI ADPPY L  +      D   +             +A+ A+TR
Sbjct: 38  DFLTDAASLPDASIDLIVADPPYGLGKDYG---NDSDKLQG-----------DAHLAWTR 83

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
            WL      LK +G+L+V  ++     I + L+     ++N+I+W +  P      RR+ 
Sbjct: 84  QWLELAIPKLKASGSLYVFCTWQYAPEIFSFLKTR-LTMVNEIIWDRRVPSMGGTTRRYT 142

Query: 147 NAHETLIWASPSPKAKGY------------TFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + H+ + + +   K+  +            T    + K       +   +         R
Sbjct: 143 SVHDNIGFFA-VSKSYYFDLDPVRIPYDAETKKARSRKLFEGSKWLELGYNPKDVWSISR 201

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           L  +  E++ HPTQKP  L+ R+++SS  PG ++LDPF GSGT+     +  R F+G E+
Sbjct: 202 LHRQHAERVDHPTQKPLELVERMVLSSCPPGGVVLDPFMGSGTTAVACARHGRGFVGYEI 261

Query: 254 KQDYIDIATKRI 265
            + Y  IA +R+
Sbjct: 262 NESYCAIARERV 273


>gi|33337333|gb|AAQ13334.1| HpyIIIM protein [Helicobacter pylori]
          Length = 268

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 136/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      +V      WDK +     
Sbjct: 19  TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINDI 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 77  DEFNCQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKANGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + ++I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFIKIS 250

Query: 262 TKR 264
             R
Sbjct: 251 MNR 253


>gi|114566374|ref|YP_753528.1| adenine-specific DNA-methyltransferase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337309|gb|ABI68157.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 459

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 105/293 (35%), Gaps = 29/293 (9%)

Query: 20  KDKIIKGNSISVLEKLP----AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS---- 71
            ++I +G++++VL  L     A  +DLI+ DPPY    N                     
Sbjct: 59  LNRIYQGDNLAVLNLLLQQGFAGKIDLIYIDPPYLSNSNYNSRISVEHQGQKYFIERLAF 118

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            D+     +Y       L   + +L   G+++V   +H+   +  +L  +          
Sbjct: 119 KDRDEDLVSYLQQIYKRLKIMKMLLSEQGSIFVHLDWHSSHYVKILLDEIFSSDNFINEI 178

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV------------- 178
                  +   R F   H+ ++W         YTFN          +             
Sbjct: 179 IWCYGGGSGTRRHFHRKHDQILWYGKGKD---YTFNPQYRPYTEGTLQRGLTRVKGKKYT 235

Query: 179 -QMRSDWLIPICSGSERL--RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                  L        ++           PTQKP ALL RI+ S++ PGD++ D + GSG
Sbjct: 236 LHKEGALLQDWWVDINKILSPTARENLKFPTQKPLALLKRIIASASNPGDLVADFYAGSG 295

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRI--ASVQPLGNIELTVLTGKRTEP 286
           T+    +++ RS+I  +  +  I  +  R+     +P    EL     +  +P
Sbjct: 296 TTAEACEEMNRSWISCDCSKLAIQSSRYRLLRKKARPFQITELIEEDNEEQKP 348


>gi|296159696|ref|ZP_06842519.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
 gi|295890140|gb|EFG69935.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
          Length = 301

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 120/274 (43%), Gaps = 27/274 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + +S +  +P  S+DLI  DPPY L  +               +  D   + + +
Sbjct: 38  QLLNRDFLSDVANIPDGSIDLILCDPPYGLGKDYG-------------NDSD-MRTGDDF 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 84  LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGT 142

Query: 142 GRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICS 190
            RRF + H+ + + + S                 T    + K       +   +      
Sbjct: 143 VRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAATKKARSRKLFEGSKWLEVGYNPKDVW 202

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              RL  +  E++ HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R F+
Sbjct: 203 SVSRLHRQHAERVAHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 262

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           G E+ + Y  IA +R+++              +R
Sbjct: 263 GYEINESYCAIARERVSAAAAPPVARRVKAKTQR 296


>gi|323529195|ref|YP_004231347.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323386197|gb|ADX58287.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1001]
          Length = 303

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/277 (23%), Positives = 121/277 (43%), Gaps = 30/277 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L  +               +  D   + + +
Sbjct: 39  QLLNRDFLTDVANIPDGSIDLILCDPPYGLGKDYG-------------NDSD-MRTGDDF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKTRLL-MINEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICS 190
            RRF + H+ + + + S                 T    + K       +   +      
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYYFDLDPVRIPYDAATKKARSRKLFEGSKWLELGYNPKDVW 203

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              RL  +  E++ HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R F+
Sbjct: 204 SVSRLHRQHAERVDHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 263

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           G E+ + Y  IA +R+++        +     K   P
Sbjct: 264 GYEINESYCAIARERVSAAVSAP---VKRRPVKVKAP 297


>gi|76819441|ref|YP_335927.1| DNA methylase [Burkholderia pseudomallei 1710b]
 gi|76583914|gb|ABA53388.1| DNA methylase [Burkholderia pseudomallei 1710b]
          Length = 258

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 27/259 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + +     LP  S+DLI ADPPY L  +               +  DK  S + + 
Sbjct: 7   LHNRDFLHEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 52

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+TR WL      LK  G+++V  ++     I + L+     ++N+I+W +  P      
Sbjct: 53  AWTREWLELAVPKLKSTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 111

Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
           RRF + H+ + + + S                 T    + K       +   +       
Sbjct: 112 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWS 171

Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G
Sbjct: 172 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRGFVG 231

Query: 251 IEMKQDYIDIATKRIASVQ 269
            E+ + Y  IA +R+AS+ 
Sbjct: 232 YEINESYCAIARERVASLA 250


>gi|317011937|gb|ADU82545.1| type II adenine methyltransferase [Helicobacter pylori Lithuania75]
          Length = 273

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      +V      WDK       
Sbjct: 19  TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEDGINGI 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 77  DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E++  K   
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE +  +I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFIGIEKESGFIKIS 250

Query: 262 TKR 264
             R
Sbjct: 251 MDR 253


>gi|288931950|ref|YP_003436010.1| DNA methylase N-4/N-6 domain protein [Ferroglobus placidus DSM
           10642]
 gi|288894198|gb|ADC65735.1| DNA methylase N-4/N-6 domain protein [Ferroglobus placidus DSM
           10642]
          Length = 303

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 104/275 (37%), Gaps = 46/275 (16%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E  D II G++  VL+ LP   + L+   PPYN+                     D+  +
Sbjct: 50  ELLDNIILGDAREVLKNLPKNCIHLMVTSPPYNVGKEY-----------------DEDLT 92

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM---------LQNLNFWILND 128
              Y  F    +    RVL   G   V  +  N+ R   +          + + F    +
Sbjct: 93  LGEYLDFIEEVMKEVYRVLVWGGR--VCFNVANLGRKPYIPLHAYLIERFEKIGFLFRGE 150

Query: 129 IVWRKSNPMPNFRGRRFQNA----------HETLIWASPSPKAKGYTFNYDALKAANEDV 178
           I+W K + +                     HE +I  S     +    N +   +  E +
Sbjct: 151 IIWDKGDAVSGASTAWGTWQSAVNPVLRDQHEYIIVLSKGSFKRE-KGNKEDTISREEFL 209

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           +            ++R+        HP   PE L  R +   T  GD++LDPF GSGT+ 
Sbjct: 210 EFTKSVWKFPPESAKRV-------GHPAPFPEELPYRCIQLFTFKGDVVLDPFVGSGTTC 262

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
             A K  R FIGI++++ Y++IA +RI  ++    
Sbjct: 263 VAALKTGRHFIGIDIEEKYVEIAKRRIKEIKATKK 297


>gi|260174737|ref|ZP_05761149.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Bacteroides sp. D2]
 gi|315922997|ref|ZP_07919237.1| modification methylase HinfI [Bacteroides sp. D2]
 gi|313696872|gb|EFS33707.1| modification methylase HinfI [Bacteroides sp. D2]
          Length = 224

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 100/249 (40%), Gaps = 35/249 (14%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
             +KI   + +  L+++P  SVD I  DPPY L +     +               F   
Sbjct: 2   ITNKIYNEDCLEALKRVPDNSVDCIITDPPYFLGMTHNGQK-------------GSFKDL 48

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
                F R   L   RV KP   ++    +              +   ++++       P
Sbjct: 49  SICKPFYRDLFLEFNRVKKPGACVYFFTDWR--GYAFYYPLFDLYIGASNMIVWNKQSGP 106

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              G  +   HE +++      + G T   D +++                      +  
Sbjct: 107 ---GNHYAFIHELILFHCGKGVSIGATNIIDNIRSFASG-----------------AKLV 146

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +GEK+HPTQKP AL+ +++  STKPGD+ILD F GSGT+   A +  R+F+ +E  + Y 
Sbjct: 147 EGEKVHPTQKPVALIRKLIEDSTKPGDLILDTFGGSGTTAVAAIESGRNFVLMEQDEIYY 206

Query: 259 DIATKRIAS 267
             A KRI  
Sbjct: 207 FTAQKRIKD 215


>gi|166368612|ref|YP_001660885.1| putative methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166090985|dbj|BAG05693.1| DNA-methyltransferase [Microcystis aeruginosa NIES-843]
          Length = 295

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 36/293 (12%)

Query: 23  IIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           I  G+S+ +L   + + SVDLIF DPPYN+                  D +DK+ S   Y
Sbjct: 12  IFHGDSLPILSSEIASNSVDLIFLDPPYNIG-------------KHFADFYDKWESENDY 58

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L  C R+LKP GTL+V+ S   +      L+     +   I    S+ +    
Sbjct: 59  INWANQILDQCLRILKPQGTLYVMASTQAMPYFDLYLRQKMTILSRIIWHYDSSGV--QA 116

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
            + F + +E ++          YTFN   +K            +    + S +      G
Sbjct: 117 TKYFGSMYEPILHCVK--DKNNYTFNSKDIKIEAKTGAKRKLIDYRKAIPSQYNTEKVPG 174

Query: 192 S----ERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     R+R + D  + HP+QKPE+LL RI+++ST    I+LDPF G+ T+ AVAK+L R
Sbjct: 175 NVWYFPRVRYRMDEYENHPSQKPESLLERIILASTDKSGIVLDPFAGTFTAAAVAKRLGR 234

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT---GKRTEPRVAFNLLVER 296
             I IE +++Y+ I  +RI   Q     +L        +++E +   N + E 
Sbjct: 235 ISISIESQEEYLKIGLRRILGWQEYKEEKLLPPQKSYSRKSENKQESNFVQES 287


>gi|172036749|ref|YP_001803250.1| putative methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171698203|gb|ACB51184.1| probable DNA-methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 284

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/274 (27%), Positives = 130/274 (47%), Gaps = 29/274 (10%)

Query: 20  KDKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +  I+ G+SI +L +++  +S+ LIF DPPYN+                  +  DK+ + 
Sbjct: 9   EHIILFGDSIKLLDQEIQDESIHLIFVDPPYNIGKK-------------YANFIDKWPTE 55

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E Y  +  +WL  C + L P G+++++ S   I  +   L+     +   I    S+ + 
Sbjct: 56  ENYLLWCYSWLELCFKKLHPEGSIYLMASTQTIPYLDIYLRKHIHILSRIIWHYDSSGV- 114

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ------------MRSDWLI 186
                 F + +E +I+   +PK+  +  +   ++A     +              S  + 
Sbjct: 115 -QAKNYFGSLYEPIIYGVKNPKSYTFNRDDIKVEAKTGSKRKLIDYRKAIPKVYNSHKVP 173

Query: 187 PICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                  R+R +  E + HPTQKPEALL RI+++S+  GD ILDPF G+ T+ AVA+K+ 
Sbjct: 174 GNVWYFPRVRYRMEEYEKHPTQKPEALLKRIILASSNVGDTILDPFAGTFTTSAVAQKVG 233

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
           R  IGIE+++DYI I  +R+          L   
Sbjct: 234 RKSIGIEIEEDYIKIGLRRLGICTHYNGNLLQKP 267


>gi|308183890|ref|YP_003928023.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           SJM180]
 gi|308059810|gb|ADO01706.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           SJM180]
          Length = 273

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      +V      WDK +     
Sbjct: 19  TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINDI 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 77  DEFNHQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 137 CRYLTHSAEQIIWARKSFK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKANGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE +  +I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFIGIEKESGFIKIS 250

Query: 262 TKR 264
             R
Sbjct: 251 MNR 253


>gi|88602175|ref|YP_502353.1| DNA methylase N-4/N-6 [Methanospirillum hungatei JF-1]
 gi|88187637|gb|ABD40634.1| DNA methylase N-4/N-6 [Methanospirillum hungatei JF-1]
          Length = 451

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/335 (23%), Positives = 120/335 (35%), Gaps = 34/335 (10%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
           ++ NS + ++      E+ D+II G+S  +L +LP   +DLI   PPYN  L        
Sbjct: 136 AEGNSFS-HQTHPLPDEYLDQIICGDSEEILSRLPENCIDLIITSPPYNFGLEYSS---- 190

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGT 116
                  +  W      +AY            RVLK  G   V        Y  +  + +
Sbjct: 191 ----SGDSAHW------QAYLDKLYRVFAQGIRVLKYGGRFIVNVQPLFSDYIPLHHLIS 240

Query: 117 MLQNLNFWILNDIVWRKSN---PMPNFRGRRFQNAHETL---IWASPSPKAKGYTFNYDA 170
                   I    +  + N         G     +   L                 +  +
Sbjct: 241 SFFMNQKMIWKGEILWEKNNYNCKYTSWGSWKSPSSPYLKYTWEFIEIFCKGTLKKSGKS 300

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
             A   D + +S  +     G ER         HP   PE L+ R L   +  GDIILDP
Sbjct: 301 EDADISDEEFKSWVVAKWSIGPERRMKHFN---HPAMFPEELVERCLKLFSFQGDIILDP 357

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
           F G+GT+ AVA +  R FIG+++  +Y D A +R+    P  +        K +E  V  
Sbjct: 358 FNGAGTTTAVAARTNRHFIGLDISSEYCDCARERL-LQIPASSDRKKEKQKKTSEKSVLT 416

Query: 291 NLLV---ERGLIQPGQILTNAQGNISA-TVCADGT 321
           +       RG     ++LT            +DG+
Sbjct: 417 SSFETPKRRGRPPKQRVLTEESSQHHLDRFYSDGS 451


>gi|281412388|ref|YP_003346467.1| DNA methylase N-4/N-6 domain protein [Thermotoga naphthophila
           RKU-10]
 gi|281373491|gb|ADA67053.1| DNA methylase N-4/N-6 domain protein [Thermotoga naphthophila
           RKU-10]
          Length = 308

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/269 (20%), Positives = 99/269 (36%), Gaps = 39/269 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
               DK+I+G++  VL+K+P +S+ L+   PPYN+                     D+  
Sbjct: 51  ENLLDKVIEGDAREVLKKIPDRSIHLMVTSPPYNVGKEY-----------------DEDM 93

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY--------------HNIFRIGTMLQNLN 122
           + + Y  F    +    R+L   G +    +               H   +IG +++   
Sbjct: 94  TLDEYLEFIEEVMKEVYRILVWGGRVCFNVANLGRKPYIPLHAYLIHLFEKIGFLIRGEI 153

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQ---NAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
            W   + V   S    ++         + HE +I  S     +    + +       +  
Sbjct: 154 IWDKGEAVSGSSTAWGSWMSPVNPVLRDQHEYIIVMSKGDLKRRKPSDREVESTITREEF 213

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           +            E  +       HP   PE L  R +   T  GD++LDPF G GT+  
Sbjct: 214 LE-FTRSVWKFPPESAK----RVGHPAPFPEELPYRCIQLYTFKGDVVLDPFAGVGTTCV 268

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
              K  R F+GIE+  +Y+  A +R+  +
Sbjct: 269 ATVKTGRHFVGIEINPEYVKKAEERVKDI 297


>gi|254778814|ref|YP_003056919.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           B38]
 gi|254000725|emb|CAX28645.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           B38]
          Length = 277

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 137/243 (56%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      +V      WDK +     
Sbjct: 22  TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINGI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E++  K   
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAITPWEKVNGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + ++I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKREFIGIEKESEFIKIS 253

Query: 262 TKR 264
             R
Sbjct: 254 MNR 256


>gi|116671332|ref|YP_832265.1| site-specific DNA-methyltransferase (adenine-specific)
           [Arthrobacter sp. FB24]
 gi|116611441|gb|ABK04165.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Arthrobacter sp. FB24]
          Length = 290

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 106/268 (39%), Gaps = 22/268 (8%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------------NGQLYRPDHSLV 65
           + ++  ++   L  LP  +  LI+ DPP+N                   G          
Sbjct: 12  NLVVHADNAEYLPTLPDGAFTLIYVDPPFNTGRAQSRQQTTMVRNADGGGDRVGFKGRSY 71

Query: 66  DAVTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
           D +  +  K+   F  Y +F    L+   R+L  +GTL++   Y  +     ML  +   
Sbjct: 72  DTIKGALHKYDDAFSDYWSFLEPRLVEAWRLLADDGTLYLHLDYREVHYAKVMLDAIFGR 131

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDV 178
                    +         R+   H+ ++    +P    +         Y A      + 
Sbjct: 132 ECFLNEIIWAYDYGARAKFRWPTKHDNILVYVKNPAKYHFNSAEVDREPYMAPGLVTPEK 191

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           +        +   +        +  +PTQKPE L+ R++ +S++PGD  LD F GSGT G
Sbjct: 192 RELGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGLIRRVVAASSRPGDWCLDFFAGSGTLG 251

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           AVA KL R F+ ++  Q  I++ +KR++
Sbjct: 252 AVAAKLDRKFVCVDQNQPAIEVMSKRLS 279


>gi|210134296|ref|YP_002300735.1| type II R-M system methyltransferase [Helicobacter pylori P12]
 gi|210132264|gb|ACJ07255.1| type II R-M system methyltransferase [Helicobacter pylori P12]
          Length = 282

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      +V      WDK       
Sbjct: 22  TLYQGDCNEVLSQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEDGINGI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N + QMR  W  P  +  E+   K   
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEILKKINNNKQMRDVWSFPAIAPWEKANGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + ++I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFIGIEKESEFIKIS 253

Query: 262 TKR 264
             R
Sbjct: 254 INR 256


>gi|91777257|ref|YP_552465.1| putative modification methylase [Burkholderia xenovorans LB400]
 gi|91689917|gb|ABE33115.1| Putative modification methylase [Burkholderia xenovorans LB400]
          Length = 301

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 120/274 (43%), Gaps = 27/274 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + +S +  +P  S+DLI  DPPY L  +               +  D   + + +
Sbjct: 38  QLLNRDFLSDVANIPDGSIDLILCDPPYGLGKDYG-------------NDSD-MRTGDDF 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            ++TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 84  LSWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGT 142

Query: 142 GRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICS 190
            RRF + H+ + + + S                 T    + K       +   +      
Sbjct: 143 VRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAATKKARSRKLFEGSKWLEVGYNPKDVW 202

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              RL  +  E++ HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R F+
Sbjct: 203 SVSRLHRQHAERVAHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 262

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           G E+ + Y  IA +R+++              +R
Sbjct: 263 GYEINESYCAIARERVSAAAAPPVARRVKAKTQR 296


>gi|295700770|ref|YP_003608663.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1002]
 gi|295439983|gb|ADG19152.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1002]
          Length = 304

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 27/257 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L  +               +  D   + E +
Sbjct: 39  QLLNRDFLTDVANIPDGSIDLIVCDPPYGLGKDYG-------------NDSD-MRTGEEF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LVWTRGWLELAVPKLKPSGSLYIFCTWQYAPEIFSFLKTKLV-MVNEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAKG-----------YTFNYDALKAANEDVQMRSDWLIPICS 190
            RRF + H+ + + + S                 T    + K       +   +      
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPKDVW 203

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              RL  +  E++ HPTQKP  ++ R+++SS   G  +LDPF GSGT+     + +R F+
Sbjct: 204 SVSRLHRQHAERVAHPTQKPLEIVERMVLSSCPKGGRVLDPFMGSGTTAVACVRHQREFV 263

Query: 250 GIEMKQDYIDIATKRIA 266
           G E+ + Y  IA +R++
Sbjct: 264 GYEINESYCAIARERVS 280


>gi|237721554|ref|ZP_04552035.1| adenine methyltransferase [Bacteroides sp. 2_2_4]
 gi|229449350|gb|EEO55141.1| adenine methyltransferase [Bacteroides sp. 2_2_4]
          Length = 224

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 100/249 (40%), Gaps = 35/249 (14%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
             ++I   + +  L+++P  SVD I  DPPY L +     +               F   
Sbjct: 2   ITNQIYNEDCLEALKRVPDNSVDCIITDPPYFLGMTHNGQK-------------GSFKDL 48

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
                F R   L   RV KP   ++    +              +   ++++       P
Sbjct: 49  SICKPFYRDLFLEFNRVKKPGACVYFFTDWR--GYAFYYPLFDLYLGASNMIVWNKQSGP 106

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              G  +   HE +++      + G T   D +++                      +  
Sbjct: 107 ---GNHYAFIHELILFHCGKGVSIGATNIIDNIRSFASG-----------------AKLV 146

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +GEK+HPTQKP AL+ +++  STKPGD+ILD F GSGT+   A +  R+F+ +E  + Y 
Sbjct: 147 EGEKIHPTQKPVALIRKLIEDSTKPGDLILDTFGGSGTTAVAAIESGRNFVLMEQDEIYY 206

Query: 259 DIATKRIAS 267
             A KRI  
Sbjct: 207 FTAQKRIKD 215


>gi|109947551|ref|YP_664779.1| hypothetical protein Hac_1016 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714772|emb|CAJ99780.1| unnamed protein product [Helicobacter acinonychis str. Sheeba]
          Length = 374

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 103/273 (37%), Gaps = 22/273 (8%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I  + ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ETYKKEFSKETNEIQSYLNQIYCADSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQDAN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          ++ Y     A    C RVLK  G + V         I T      
Sbjct: 165 L--------------WQEYFNTLFAIFTECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
            +I + ++W+        N+  +           A     +  +   +       E    
Sbjct: 211 SFIDSGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKN 270

Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            + +  D       G      +   K   H    PE L+ R L   +   DIILDPF G+
Sbjct: 271 NIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGA 330

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GT+  VAK+L R FIGI++ + Y ++A  R+  
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVAKARLKE 363


>gi|17231903|ref|NP_488451.1| putative methyltransferase [Nostoc sp. PCC 7120]
 gi|17133547|dbj|BAB76110.1| DNA-methyltransferase [Nostoc sp. PCC 7120]
          Length = 295

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 46/300 (15%)

Query: 21  DKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             +  G+++++L   +P++SVDLIF DPPYN+                 ++  DK+ S E
Sbjct: 10  HILFHGDALNILSSNIPSESVDLIFIDPPYNIG-------------KHFSNFHDKWESEE 56

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  +   WL  C RVLK +GT++V+ S   +      L+     +    +    +    
Sbjct: 57  EYANWAYKWLDECIRVLKSHGTIYVMTSTQAMPYFDIYLRQKLTILSR--IVWHYDSSGV 114

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALK--------------------AANEDVQ 179
              + F + +E ++          Y FN + +K                      N +  
Sbjct: 115 QATKYFGSMYEPILHCVK--NKSNYIFNSEEIKIEAKTGAQRKLIDYRKAVPAPYNTEKV 172

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
             + W                 + HP+QKPE+L+ RI++SS+    ++LDPF G+ T  +
Sbjct: 173 PGNVWYFSRVRY-----RMPEYENHPSQKPESLIERIILSSSNEDSLVLDPFAGTFTVAS 227

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG---KRTEPRVAFNLLVER 296
           VAK+L R  I IE +++Y+ I  +R+   +     +L+        R +   + + L + 
Sbjct: 228 VAKRLGRKSISIESQEEYLKIGLRRVLGWEEYKGEQLSPPIKTHISRNKSHQSLDSLQQS 287


>gi|170691068|ref|ZP_02882234.1| DNA methylase N-4/N-6 domain protein [Burkholderia graminis C4D1M]
 gi|170144317|gb|EDT12479.1| DNA methylase N-4/N-6 domain protein [Burkholderia graminis C4D1M]
          Length = 303

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 117/257 (45%), Gaps = 27/257 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L  +               +  D   + + +
Sbjct: 39  QLLNRDFLTDVANIPDASIDLILCDPPYGLGKDYG-------------NDSD-MRTGDDF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAKG-----------YTFNYDALKAANEDVQMRSDWLIPICS 190
            RRF + H+ + + + S                 T    + K       +   +      
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYYFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPKDVW 203

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              RL  +  E++ HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R F+
Sbjct: 204 SVSRLHRQHAERVDHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 263

Query: 250 GIEMKQDYIDIATKRIA 266
           G E+ + Y  IA +R++
Sbjct: 264 GYEINESYCAIARERVS 280


>gi|149174979|ref|ZP_01853603.1| adenine-specific methyltransferase [Planctomyces maris DSM 8797]
 gi|148846316|gb|EDL60655.1| adenine-specific methyltransferase [Planctomyces maris DSM 8797]
          Length = 306

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 116/291 (39%), Gaps = 42/291 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
               ++I   + I+ +++L A+S+DL FADPP+N+      Y              D+  
Sbjct: 1   MTKINQIHIQDCIAGMQELEAESIDLAFADPPFNIGYEYDQY-------------EDRLE 47

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E Y  +   WL    R+LKP+GT W+         +  M+Q          V      
Sbjct: 48  S-EQYLDWCNLWLKEVVRLLKPDGTFWLAIGDEYAAELKVMMQRELGLTCRSWVIWYYTF 106

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFN-------------------------YDAL 171
             N + +    +H  L +    PK   +  +                          D  
Sbjct: 107 GVNCKNKF-SRSHAHLFYMVKDPKQFTFNADDPAIRIPSARQLVYGDKRANPKGRLPDDT 165

Query: 172 KAANEDVQMRSDWLIPICSGSERLRN--KDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                     S           R+    K+ +  H  Q PE LL RI+ + + P +++LD
Sbjct: 166 WILRPQDIPESFQSEEDTWYFPRINGTFKERQGWHGCQMPEQLLGRIIRACSHPEEVVLD 225

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           PF GSGT+ AVAKKL R F+G E+ ++Y   A +R+A ++P   ++ T   
Sbjct: 226 PFSGSGTTLAVAKKLERQFVGFELSEEYGARAQQRLAEIKPGQPLDGTENP 276


>gi|325564297|gb|ADZ31432.1| M.DraI [Deinococcus radiophilus]
          Length = 328

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/260 (25%), Positives = 102/260 (39%), Gaps = 27/260 (10%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++KII  +    L+ LP   VDL+  DPPYNL                  D        E
Sbjct: 40  RNKIINQDLFDCLDNLPDAFVDLMIIDPPYNLDKVYA-----GKKFSQTDD--------E 86

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  +  +WL    R+LKP+ T+++   + +   I ++              R+      
Sbjct: 87  TYKEWVDSWLSRLIRLLKPDATVYICCDWQSSNVIHSVASKYLKIRSRITWEREKGRGSK 146

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL---- 195
              +                           + A   D   +         G  RL    
Sbjct: 147 DNWKNCSEDIWYCTVGKKYFFDVEAVKLMKRVIAPYRDGDGKPKDWSEKAEGKYRLTHPS 206

Query: 196 ----------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                      +      HPTQKPE L+++++VSS+K GD+I DPF GSGTS   AKKL 
Sbjct: 207 NLWTDISIPFWSMPENTDHPTQKPEKLIAKLIVSSSKKGDMIFDPFMGSGTSCVTAKKLG 266

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R+++GIE+ ++Y  +A  R+
Sbjct: 267 RNYLGIEISEEYCKMAAARL 286


>gi|224538890|ref|ZP_03679429.1| hypothetical protein BACCELL_03786 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519497|gb|EEF88602.1| hypothetical protein BACCELL_03786 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 262

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 117/260 (45%), Gaps = 13/260 (5%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E+ +KI   + ++ + +LP KSV L+   PPYN+ +          LV++    +    
Sbjct: 1   MEYTNKIFNHSCLN-MSELPDKSVSLMVTSPPYNINIEYGNKWDKGKLVESKGKKYIDNL 59

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH----NIFRIGTMLQNLNFWILNDIVWR 132
             E Y       +   +RVLK +G +W           I     +++      L +I+  
Sbjct: 60  EEEEYRTMLSVVIEETKRVLKDDGEIWFNIKNRYKNEEIIPPFWVMEFFKDMYLKNIIIW 119

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD-----ALKAANEDVQMRSDWLIP 187
             +   +   R     +E + + +   K   YTFN +     AL    +  + +      
Sbjct: 120 NFDWGGSTNKRFCSR-YEYVFFFTK--KKGDYTFNLEDVKIPALNYRPDRYKSQLKNPTD 176

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + + S    N      HP Q PE L+ RI+   T PGD++LDPF GSGT+  VAKKL R+
Sbjct: 177 VWNISLVSGNSPERTEHPAQYPEELIERIIKVGTNPGDLVLDPFMGSGTTAVVAKKLGRN 236

Query: 248 FIGIEMKQDYIDIATKRIAS 267
           ++G E++ D+I IA  R+ +
Sbjct: 237 YVGYEIEPDFIKIAENRLNN 256


>gi|108562739|ref|YP_627055.1| DNA methylase [Helicobacter pylori HPAG1]
 gi|107836512|gb|ABF84381.1| DNA methylase [Helicobacter pylori HPAG1]
          Length = 369

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 101/273 (36%), Gaps = 22/273 (8%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQDTN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          ++ Y     A    C RVLK  G + V         I T      
Sbjct: 165 L--------------WQEYFNALFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
           F+I   ++W+        N+  +           A     +  +   +       E    
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNSLKKEGDKD 270

Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            + +  D       G      +   K   H    PE L+ R L   +   DI+LDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIVLDPFNGA 330

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GT+  VAK+L R FIGI++ + Y + A  R+  
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEAARARLKE 363


>gi|299136441|ref|ZP_07029624.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298600956|gb|EFI57111.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 278

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 109/278 (39%), Gaps = 35/278 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW------- 72
            ++I+   +++ L  LP  SV LI+ DPP+N     +  R      DA            
Sbjct: 1   MNRILHRENLTALRSLPDASVQLIYIDPPFNTGTTQRRARMKTVRDDAGDRIGFGGKRYR 60

Query: 73  --------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF- 123
                   +    F+ Y  F R  ++   RVL   G+L+       +     ML  +   
Sbjct: 61  TEKLAIAPNYTDRFDDYLGFLRPRMIEAHRVLSATGSLFFHVDPREVHYCKIMLDEVFTT 120

Query: 124 -------WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
                     N+I+W       + +   +   H+ ++W +  PK   YTFN +A      
Sbjct: 121 PGVSGRACFQNEIIWAYDYGARSTKR--WPAKHDNILWYTKDPK--DYTFNLEASDRIPY 176

Query: 177 --------DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                   +   R      +   +        +  +PTQKP  +L RI+   + P D +L
Sbjct: 177 MAPGLVGAEKARRGKTPTDVWWHTIVSPTGKEKTGYPTQKPLGILERIVRVHSNPDDTVL 236

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           D F GSGT+G  A +  RS+I ++  ++ + +  KR+ 
Sbjct: 237 DFFAGSGTTGLAAARNGRSYILVDESKEAVTLMKKRLK 274


>gi|119487543|ref|ZP_01621153.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
 gi|119455712|gb|EAW36848.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
          Length = 291

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 100/268 (37%), Gaps = 41/268 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            I +G+ + ++ +LP     L    PPYN+    +                    S E Y
Sbjct: 23  LIYQGDCLKLMNQLPEGYFSLTVTSPPYNIGKEYESVL-----------------SVEDY 65

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+   W+    R    +G  W+   Y ++      +            +     + N+ 
Sbjct: 66  IAWMVEWIAQVYRCTSRDGAFWLNLGYLSLPHQAKAIPIPYLIWDKVPFYLIQEIVWNYS 125

Query: 142 GR-----RFQNAHETLIWASPSPKAKGYTFNYDALKAAN----------------EDVQM 180
                   F   +E  +W      A  Y FN D ++  N                +    
Sbjct: 126 AGVAGKLFFSPRNEKFLWYVK--DANHYIFNLDDVRDPNVKYPHQKKNGKLKCNTKGKNP 183

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
              W IP  +  +  R+      HP Q P  L+SRI+++S+  GDI+ DPF GSG++   
Sbjct: 184 TDVWQIPKVTSGKN-RSSKERTSHPAQFPIQLVSRIILASSNLGDIVFDPFLGSGSTAEA 242

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           A +  R  IG E+   YID+A KRI + 
Sbjct: 243 AIRNGRKIIGFEINDLYIDMAIKRIKTF 270


>gi|126658932|ref|ZP_01730074.1| DNA methylase N-4/N-6 [Cyanothece sp. CCY0110]
 gi|126619730|gb|EAZ90457.1| DNA methylase N-4/N-6 [Cyanothece sp. CCY0110]
          Length = 367

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 130/295 (44%), Gaps = 46/295 (15%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           N + +    ++I  G+ +++L +LP + VDL+ + PPYNL    +  +            
Sbjct: 2   NSSYLNLPLNQIFLGDCLALLSQLPNECVDLVISSPPYNLGKEYEAKKA----------- 50

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGT-LWVIGSYHN-------IFRIGTMLQNLNF 123
                  + Y A     L  C R+LK  G+  W +G+Y N         R   +L++   
Sbjct: 51  ------LDNYLAEQTLVLQECSRILKKTGSIFWQVGAYSNQGSLIPLDIRFFPILESCGL 104

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE------- 176
              N I+W + + +      +F   HET++W +    +  YTFN DA++   +       
Sbjct: 105 IPRNRIIWVRQHGL--HAQNKFSCRHETILWFTK---SPKYTFNLDAIRIPQKYQNKKYY 159

Query: 177 --------DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                       +      I        N + + +HP Q PE L++RI++++T   DII 
Sbjct: 160 KGNKKGKLSCNPKGKNPGDIWLFRNVKHNHEEQTIHPCQFPEDLVARIILATTNSNDIIF 219

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           DP+ GSGT   V+K  +R FIG E+++ Y DIA +R+   +P        L   R
Sbjct: 220 DPYLGSGTVAVVSKNYKRYFIGSEIEEKYYDIALRRLEE-KPDTKNYFPNLKTLR 273


>gi|1171049|sp|P14243|MTC9_CITFR RecName: Full=Modification methylase Cfr9I; Short=M.Cfr9I; AltName:
           Full=N(4)- cytosine-specific methyltransferase Cfr9I
 gi|40464|emb|CAA34887.1| DNA (Cytosine-4)-Methyltransferase [Citrobacter freundii]
          Length = 300

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 118/282 (41%), Gaps = 57/282 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+++SVL +LP+ SV  I   PPY    +             + +     SS   +
Sbjct: 27  TLFEGDALSVLRRLPSGSVRCIVTSPPYWGLRDY-----------GIDEQIGLESSMTQF 75

Query: 82  DAFTRAWLLACRRVLKPNGTLWV-IGSYHNI----------------------------- 111
                      +RVL  +GTLWV IG  +                               
Sbjct: 76  LNRLVTIFSEAKRVLTDDGTLWVNIGDGYTSGNRGYRAPDKKNPARAMAVRPDTPEGLKP 135

Query: 112 -------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
                  +R+   LQ   +++ +DIVW K N MP     R   +HE L   +    ++ Y
Sbjct: 136 KDLIGIPWRLAFALQEDGWYLRSDIVWNKPNAMPESVKDRPTRSHEFLFMLTK---SEKY 192

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            ++++A++   +    R+            +  K     H    P  L+   +++STKPG
Sbjct: 193 YYDWEAVREEKDSGGFRNRRT------VWNVNTKPFAGAHFATFPTELIRPCILASTKPG 246

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           D +LDPFFGSGT G V ++  R ++GIE+  +Y+DIA  R+ 
Sbjct: 247 DYVLDPFFGSGTVGVVCQQEDRQYVGIELNPEYVDIAVNRLQ 288


>gi|308182268|ref|YP_003926395.1| type II adenine methyltransferase [Helicobacter pylori PeCan4]
 gi|308064453|gb|ADO06345.1| type II adenine methyltransferase [Helicobacter pylori PeCan4]
          Length = 273

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      +V      WDK +     
Sbjct: 19  TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINDI 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 77  DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKTNGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE +  +I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIEKESGFIKIS 250

Query: 262 TKR 264
             R
Sbjct: 251 MNR 253


>gi|163782845|ref|ZP_02177841.1| DNA modification methylase-like protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881966|gb|EDP75474.1| DNA modification methylase-like protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 281

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 115/284 (40%), Gaps = 21/284 (7%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           + I ++ + +I G+ + VL+++P++S+DL    PPYN +   + +  D  + ++  D+  
Sbjct: 2   SDIAKFLNGVICGDVLEVLKQIPSESIDLGITSPPYNKKGKNKGWLVDRVVYESYGDNMK 61

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           +    E Y  +    L    RV+K  G+ +     H I      + +   W+       +
Sbjct: 62  E----EEYQEWQVEVLNKLYRVIKEGGSFFYN---HKIRWERGKMIHPYEWVSKTKWAVR 114

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
              + N +                  +   + +         E+++        +     
Sbjct: 115 QEIVWNRKLAGNIRG----WRFWQVDERIYWLYKPKNGNLIGEELKPEHAKFSSVW---- 166

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
            +R + G K HP   P  L +RI++S       I+LDPF G GT+   AK L   ++GI+
Sbjct: 167 EIRPESGFKEHPAPFPIELPTRIILSILDDKKGIVLDPFCGIGTTLVSAKLLGHDYVGID 226

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           + +DY+D + +R+   +      L     K  E  +      ER
Sbjct: 227 ISKDYVDFSQRRLERAEEEMEKVL-----KEKEEHIVNMTFEER 265


>gi|317179291|dbj|BAJ57079.1| DNA methylase [Helicobacter pylori F30]
          Length = 369

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 102/273 (37%), Gaps = 22/273 (8%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDTN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          ++ Y     A    C RVLK  G + V         I T      
Sbjct: 165 L--------------WQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
           F+I   ++W+        N+  +           A     +  +   +       E    
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKD 270

Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            + +  D       G      +   K   H    PE L+ R L   +   DIILDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGA 330

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GT+  VAK+L R FIGI++ + Y ++A  R+  
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVARARLKE 363


>gi|323344448|ref|ZP_08084673.1| DNA methylase [Prevotella oralis ATCC 33269]
 gi|323094575|gb|EFZ37151.1| DNA methylase [Prevotella oralis ATCC 33269]
          Length = 278

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/280 (25%), Positives = 110/280 (39%), Gaps = 33/280 (11%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSL------VDA 67
           + E+ +KII  N + VL+KLP  S+DL+   PPYNL+      +             +  
Sbjct: 2   LEEYLNKIINANCMEVLKKLPNNSIDLVVTSPPYNLKNSTGNGMKDGRGGKWSNAALIKG 61

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH-NIFRIGTMLQNLNFWIL 126
             DS+D     + Y  +    LL   RV+K +G ++    +      +      +    L
Sbjct: 62  Y-DSYDDCMPNDEYAKWQHEVLLELVRVIKDDGAIFYNHKWRVQNGLMQDRHDIVYDVPL 120

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
             I+  K     NF    F   +E + + +                     +   S+   
Sbjct: 121 RQIIIWKRKGGINFNAGYFLPTYEVIYFIAKKDFK----------------LAPHSNNYG 164

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +    +  RN      HP   P  L+ RI+ S+T    IILDPF GSGT+  VA  L R
Sbjct: 165 DVWEIMQEQRND-----HPAPFPVELIDRIISSTTSQ--IILDPFMGSGTTAVVAAGLGR 217

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
            FIGIE    Y ++A +R+   +    +         T+P
Sbjct: 218 DFIGIEKSPKYCEVAMQRLERNKINSEVAKFHQPTFFTKP 257


>gi|269123833|ref|YP_003306410.1| DNA methylase N-4/N-6 domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268315159|gb|ACZ01533.1| DNA methylase N-4/N-6 domain protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 391

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 117/304 (38%), Gaps = 33/304 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I   + +  +  +  +++DLI+ DPP+  Q   +L   +    +   D W+     E 
Sbjct: 4   NDIYNLDCLDGMRNMYDETIDLIYLDPPFFTQRKHKLKSKEGIEYE-FNDIWN---DIEE 59

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  + R  L+  +RVLK +G ++V    +    I  +L+ +            +    + 
Sbjct: 60  YKEYLRIRLVEMKRVLKNDGNIFVHCDNNASHIIRLLLEEIFGVSNFVSEIIWTYKRWSN 119

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
             +   ++H+ +   S S + K      D     N D  ++            + R+++G
Sbjct: 120 SKKGLLDSHQNIYHFSKSKEYKFNIIYTDYSPTTNVDQILQDRIRDGNGKSIYK-RDENG 178

Query: 201 EKLH----------------------------PTQKPEALLSRILVSSTKPGDIILDPFF 232
           + ++                            PTQKP  LL  IL  ++  GDI+LDPF 
Sbjct: 179 KVVYNRIKKGVPLGDVWEIPFLNPKAKERVGYPTQKPIQLLENILKIASNEGDIVLDPFL 238

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
           GSGT    +K L R +IG ++  + I IA  R+       +  L     K          
Sbjct: 239 GSGTCAVASKLLNRRYIGFDINPNAISIAKYRLEYPIKTESALLKNGIDKYDVKTDREKR 298

Query: 293 LVER 296
           ++ R
Sbjct: 299 ILSR 302


>gi|297379533|gb|ADI34420.1| Modification methylase [Helicobacter pylori v225d]
          Length = 369

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 102/273 (37%), Gaps = 22/273 (8%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSTTQDAN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          ++ Y     A    C RVLK  G + V         I T      
Sbjct: 165 L--------------WQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
           F+I   ++W+        N+  +           A     +  +   +       E    
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKD 270

Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            + +  D       G      +   K   H    PE L+ R L   +   DIILDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGA 330

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GT+  VAK+L R FIGI++ + Y ++A  R+  
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVARARLKE 363


>gi|262199051|ref|YP_003270260.1| DNA methylase N-4/N-6 domain protein [Haliangium ochraceum DSM
           14365]
 gi|262082398|gb|ACY18367.1| DNA methylase N-4/N-6 domain protein [Haliangium ochraceum DSM
           14365]
          Length = 319

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 117/278 (42%), Gaps = 37/278 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-DKFSSFE 79
           D++I  +++ V+++L    +DL++ DPP+     G+L R   +  DA   ++ D   + E
Sbjct: 25  DRLIHADNLKVMDELGDGCIDLVYIDPPFAT---GKLRRGREAADDAPALAFRDVPDNPE 81

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            + A+    L+ACRR+L  +G+L+V   Y  +  +   L  +               +  
Sbjct: 82  DFVAWLEPRLVACRRLLAGHGSLFVHLDYRTVHYVKVCLDRIFGRSRFVNEIIWCYSVGG 141

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI------------- 186
              RRF   H+T++W +    +  Y F  DA++   +                       
Sbjct: 142 KSRRRFARKHDTILWYTR---SGDYAFFPDAVRVPRKGGSHMRVVRDESGALVQEKTDRR 198

Query: 187 ----------------PICSGSERL-RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                              +  E L R        PTQKPE LL RI+ ++  P  ++ D
Sbjct: 199 TGKVYRYPVAAGKIPEDWWADIELLNRGDRERTGWPTQKPERLLERIIGATAGPDAVVAD 258

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            F G+GT+ AVA++L R F+  ++    +  A +R+  
Sbjct: 259 WFCGAGTTAAVAQRLGRRFLTTDIASSAVACAEQRLEQ 296


>gi|168703324|ref|ZP_02735601.1| adenine-specific methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 290

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 124/278 (44%), Gaps = 48/278 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + + +G+ + VL  LPA   DL+FADPP+N+     +Y    +                 
Sbjct: 7   NDVAEGDCVQVLNTLPAGCADLVFADPPFNIGYQYDVYDDKRAK--------------AD 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +T  WL A  RVL P+G+L++      +      L  L   + N +VW  +  +   
Sbjct: 53  YLTWTEKWLAAAVRVLAPHGSLFLAIGDEFVAEHKVRLDALGLTMRNWVVWHYTFGVNC- 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNY----------------DALKAANEDVQM---- 180
             ++F  +H  +++    PK   +  +                 + +    +D  +    
Sbjct: 112 -SKKFNRSHAHILYYVRDPKNHQFFPDEVRVPSARMTTYADKRANPVGKLPDDTWVLRPQ 170

Query: 181 ---------RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                       W +P   G+   RN+ G   H  Q PEA+L R++  ++KPGD++LDPF
Sbjct: 171 ESDAHFAPDSDTWHVPRICGTFHERNEAG---HKCQMPEAVLDRVIRVASKPGDLVLDPF 227

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GSGT+ AVAKKL R + G+E+ + Y D   KR+  ++
Sbjct: 228 AGSGTTLAVAKKLGRRYFGVELSEQYADGVRKRLQMIE 265


>gi|312796824|ref|YP_004029746.1| adenine-specific methyltransferase [Burkholderia rhizoxinica HKI
           454]
 gi|312168599|emb|CBW75602.1| Adenine-specific methyltransferase (EC 2.1.1.72) [Burkholderia
           rhizoxinica HKI 454]
          Length = 313

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 27/246 (10%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
             + ++ +  L  +S+DLI ADPPY L  +      D    +            + + A+
Sbjct: 57  NCDFLTDVGSLADQSIDLILADPPYGLGKDYG---NDSDKRNG-----------QDFIAW 102

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
           T  WL      LKP+G+L+V  ++     I   L+     ++N+I+W +  P      RR
Sbjct: 103 TCRWLELAIPKLKPSGSLYVFCTWQYAPEIFCFLKRR-LTMINEIIWDRRVPSMGGTTRR 161

Query: 145 FQNAHETLIWASPSPKAK-----------GYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           F + H+ + + + S                 T    + +       +   +         
Sbjct: 162 FTSVHDNIGFFAVSKDYYFDLDPVRIPYDPVTKKARSRRIFEGSKWLELGYNPKDVWSVS 221

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           RL  +  E++ HPTQKP  ++ R+++SS  PG ++LDPF GSGT+     + +R F+G E
Sbjct: 222 RLHRQHAERVAHPTQKPLEIIERMVLSSCPPGGLVLDPFMGSGTTAVACARHQRRFVGYE 281

Query: 253 MKQDYI 258
           +  +Y 
Sbjct: 282 INPEYC 287


>gi|188527117|ref|YP_001909804.1| DNA methylase [Helicobacter pylori Shi470]
 gi|308182486|ref|YP_003926613.1| DNA methylase [Helicobacter pylori PeCan4]
 gi|188143357|gb|ACD47774.1| DNA methylase [Helicobacter pylori Shi470]
 gi|308063174|gb|ADO05061.1| DNA methylase [Helicobacter pylori Sat464]
 gi|308064671|gb|ADO06563.1| DNA methylase [Helicobacter pylori PeCan4]
          Length = 369

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 102/273 (37%), Gaps = 22/273 (8%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDAN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          ++ Y     A    C RVLK  G + V         I T      
Sbjct: 165 L--------------WQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
           F+I   ++W+        N+  +           A     +  +   +       E    
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKD 270

Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            + +  D       G      +   K   H    PE L+ R L   +   DIILDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGA 330

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GT+  VAK+L R FIGI++ + Y ++A  R+  
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVARARLKE 363


>gi|119961011|ref|YP_948482.1| adenine specific DNA methylase [Arthrobacter aurescens TC1]
 gi|119947870|gb|ABM06781.1| adenine specific DNA methylase [Arthrobacter aurescens TC1]
          Length = 304

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 110/294 (37%), Gaps = 33/294 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------------NGQLYRPDHSLV 65
           + ++  ++   L  LP  +  LI+ DPP+N                  +G          
Sbjct: 12  NLVVHADNAEFLPTLPDGAFTLIYVDPPFNTGRVQRRQETRMVRNADGDGDRVGFKGRSY 71

Query: 66  DAVTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
           D +  +   +   F  Y +F    L+   R+L  +GTL++   Y  +     ML ++   
Sbjct: 72  DTIKGALHSYDDAFSDYWSFLEPKLVEAWRLLADDGTLYLHLDYREVHYAKVMLDSIFGR 131

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA---------- 174
                    +         R+   H+ ++    +P    +       +            
Sbjct: 132 ECFLNEIIWAYDYGARAKNRWPTKHDNILVYVKNPTKYHFDNAEVDREPYMAPGLVTPAK 191

Query: 175 -NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
                     W   I S + R      +  +PTQKPE L+ RI+ +S++ GD  LD F G
Sbjct: 192 RELGKLPTDVWWHTIVSPTGR-----EKTGYPTQKPEGLVRRIVSASSREGDWCLDFFAG 246

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI-ELTVLTGKRTEP 286
           SGT GAVA KL R+F+ ++  +  I++  KR+ +         L   +  +  P
Sbjct: 247 SGTLGAVAAKLGRNFVCVDQNEQAIEVMRKRLGTKADFRRSGSLPDASLDQAAP 300


>gi|269976470|ref|ZP_06183455.1| DNA methylase N-4/N-6 domain-containing protein [Mobiluncus
           mulieris 28-1]
 gi|269935271|gb|EEZ91820.1| DNA methylase N-4/N-6 domain-containing protein [Mobiluncus
           mulieris 28-1]
          Length = 441

 Score =  145 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 116/310 (37%), Gaps = 30/310 (9%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSWDK 74
           +++  G +++ L  L    A  VD ++ DPPYN Q +         D   +       D+
Sbjct: 47  NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           +     Y  F    L A R +L   G+++V   +H    +  +   +             
Sbjct: 107 WDD-AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEIVWI 165

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWLIPI 188
                   RRF   H+T+++ + + +   +  +        A+      +      + P 
Sbjct: 166 YGSGGGSRRRFGRKHDTILFYAKNARRNFFDPDAVRVPYRAAIAPKRRGLFHPEGMVAPD 225

Query: 189 CSGSERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                R  N       +PTQKP A++ R L  +  PG ++LD F GSG++   A  L   
Sbjct: 226 VWDIPRPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGSGSTLVAAAGLGLR 285

Query: 248 FIGIEMKQDYIDIATKRIASVQPL------GNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
           FIG+E     + +A KR+ S+         G+  L  L  KR  P             +P
Sbjct: 286 FIGVECAALGVHLARKRLVSLGASFGVWRVGDTHLMNLGDKRQPPHHP----------KP 335

Query: 302 GQILTNAQGN 311
           G++  +    
Sbjct: 336 GELNRDKSNR 345


>gi|315586305|gb|ADU40686.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 35A]
          Length = 369

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 102/273 (37%), Gaps = 22/273 (8%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDAN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          ++ Y     A    C RVLK  G + V         I T      
Sbjct: 165 L--------------WQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
           F+I   ++W+        N+  +           A     +  +   +       E    
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKD 270

Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            + +  D       G      +   K   H    PE L+ R L   +   DIILDPF G+
Sbjct: 271 NIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGA 330

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GT+  VAK+L R FIGI++ + Y ++A  R+  
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVARARLKE 363


>gi|319901658|ref|YP_004161386.1| DNA methylase N-4/N-6 domain protein [Bacteroides helcogenes P
           36-108]
 gi|319416689|gb|ADV43800.1| DNA methylase N-4/N-6 domain protein [Bacteroides helcogenes P
           36-108]
          Length = 584

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 110/280 (39%), Gaps = 30/280 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II  + + +L++LP+ SVD  FADPPYN+          +   D   D  D       Y 
Sbjct: 233 IINDDCLKILKELPSNSVDFCFADPPYNV----------NKKYDNCNDDIDII----EYF 278

Query: 83  AFTRAWLLACRRVLKPNGT-------LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            +   W++   R++KP  T        W I  +  + ++      + +  L+  V     
Sbjct: 279 QWCDKWIMELARIIKPGKTVAILNIPQWAIRHFQCLNKLLKFQDWIIWEGLSVPVRMIMP 338

Query: 136 PMPNFRGR---------RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
              +              +   H  L   S +   + Y      +K   ++  +    + 
Sbjct: 339 AHYSVICFTKGEANDLPFYHLKHSPLEINSINTYKEFYCIRNSCIKKRAKENIIDKVQVT 398

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +     RL++      HPTQ P   + R++   T  GD++LDPF GSGT+   A+ L R
Sbjct: 399 NLWWDIHRLKHNSQRVDHPTQLPPMFMERLISIFTNEGDLVLDPFNGSGTTSLCAEMLGR 458

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
            + GIE+   Y DIA KR   +Q   N         + + 
Sbjct: 459 KYFGIELSSKYYDIAIKRHVDLQAGINPFGKHSETPKAKN 498


>gi|298241762|ref|ZP_06965569.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297554816|gb|EFH88680.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 344

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 114/296 (38%), Gaps = 53/296 (17%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           N+   W +++I G++  +L  L       V+LI+ DPP+                 A +D
Sbjct: 40  NNEPGWSNRLIWGDNQDILPALLPLFRDQVNLIYIDPPFMTGRTFG-----RKEQLAYSD 94

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML--------QNLN 122
           +W+     +AY  +    L    ++L P G++++   +     +  ML        Q   
Sbjct: 95  TWNN--DIDAYLQWLYPILQTLHQLLAPTGSMYLHLDWRTSHYVKVMLDEIFGFNVQGNG 152

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL----------- 171
               N+I+W   +       R +   H+T+++ + S     +                  
Sbjct: 153 PGFKNEIIWHYQSG--GQTRRYYTRKHDTILFYTKSGDYCFHKERIGERRGAQKRNHMRQ 210

Query: 172 ------------------KAANED-VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
                                NED +   SD    I    +R         + TQKP AL
Sbjct: 211 VVGPDGQISWTIKSAGKLYTYNEDTLIPPSDVWSDISHLHQR---DPERTGYATQKPAAL 267

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L RIL++S++  D+++D F GSG +  VA+ L+R +I  +  +  I   ++R+   
Sbjct: 268 LERILLASSEEDDLVMDCFCGSGVTPIVAEHLKRRWIACDKSELAITTTSQRLQQY 323


>gi|227528860|ref|ZP_03958909.1| adenine-specific methyltransferase [Lactobacillus vaginalis ATCC
           49540]
 gi|227351222|gb|EEJ41513.1| adenine-specific methyltransferase [Lactobacillus vaginalis ATCC
           49540]
          Length = 322

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 113/279 (40%), Gaps = 33/279 (11%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           E   S+ +  +K+I G+S  V+++LP+ S+DL   DPPYNL          +   D +T 
Sbjct: 30  EKSFSLEQVTNKVINGDSFQVMDQLPSHSIDLALVDPPYNL----------NKKYDGMTF 79

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
              K      Y  +T  W+   + +LK + +++V   +     +  +L+           
Sbjct: 80  KQMK---PAEYQQYTEDWINKLKPLLKASASVYVFADWETSIVLAPVLEQYFTIKNRITW 136

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASP-----------------SPKAKGYTFNYDALKA 173
            R+         +        L                        K  G+  ++ A KA
Sbjct: 137 QREKGRGALTNWKNSSEDIWFLTVDPHDYVFNVDQVKQRRPVVAPYKEDGHAKDWQATKA 196

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            N    M S+    I        +      HPTQKPE L+++++++S+ PGD+I DPF G
Sbjct: 197 GNFRDTMPSNLWDDISIP---YWSMPENTDHPTQKPEKLMAKVILASSNPGDLIFDPFAG 253

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           +G+S   AKKL R FIGIE    Y      R+       
Sbjct: 254 AGSSLVTAKKLGRHFIGIEQSLLYCAWGQYRLNKANNDP 292


>gi|307151149|ref|YP_003886533.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306981377|gb|ADN13258.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 588

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/309 (22%), Positives = 114/309 (36%), Gaps = 51/309 (16%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E+ +KI+ G+ +  L+KLP  S+D  F DPPYNL+                +D  +   
Sbjct: 232 EEYTNKILTGDCLDYLKKLPDNSIDFAFVDPPYNLKK----------QYSGYSDDLE--- 278

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y  +   W+    RVLKP  T  ++        +  +   +    L          
Sbjct: 279 -IEQYFQWCDQWIREIARVLKPGRTCAILN-----IPLRAIRHFIFSKTLLQFQNWIVWD 332

Query: 137 MPNFRGRRFQNAHETLIWASPSPKA-----------KGYTFNYDALKAAN---EDVQMRS 182
              F  R    AH T++  S                   T   +   A N   +D  +RS
Sbjct: 333 ALAFPVRLIMPAHYTILCFSKGKPRELPGLMGESGITTTTSAPETFNALNPLADDFCLRS 392

Query: 183 DWLIPI--------------CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             +                  S   RL++      HP Q P  L+ R++   T+ G+++L
Sbjct: 393 SCIKKRKNLNINDRTLLTDLWSDIHRLKHNSRRVDHPCQLPPHLMYRLISLFTEMGEVVL 452

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR----IASVQPLGNIELTVLTGKRT 284
           D F G+GT+   A ++ R +IGIE+  +Y  IA  R    +  + P    +  +      
Sbjct: 453 DCFNGAGTTTLAAHQIGRKYIGIEISPEYSKIAIDRHDEIVKGLDPFRKEDRILRAKNSP 512

Query: 285 EPRVAFNLL 293
            PR+     
Sbjct: 513 VPRLIKQKY 521


>gi|317013518|gb|ADU80954.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           Gambia94/24]
          Length = 274

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      +V      WDK +     
Sbjct: 19  TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINDI 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 77  DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRVLQKLDFKILNLITWQKTNPPPNFS 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEILKKINNDKQMRDVWNFPAIAPWEKANGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE +  +I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIEKESGFIKIS 250

Query: 262 TKR 264
             R
Sbjct: 251 MNR 253


>gi|308061664|gb|ADO03552.1| DNA methylase [Helicobacter pylori Cuz20]
          Length = 369

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 101/273 (36%), Gaps = 22/273 (8%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDAN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +  Y     A    C RVLK  G + V         I T      
Sbjct: 165 L--------------WHEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
           F+I   ++W+        N+  +           A     +  +   +       E    
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKD 270

Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            + +  D       G      +   K   H    PE L+ R L   +   DIILDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGA 330

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GT+  VAK+L R FIGI++ + Y ++A  R+  
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVARARLKE 363


>gi|296123807|ref|YP_003631585.1| DNA methylase N-4/N-6 domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296016147|gb|ADG69386.1| DNA methylase N-4/N-6 domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 306

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/312 (24%), Positives = 127/312 (40%), Gaps = 64/312 (20%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++++  + I+ L + PA SVDL FADPP+N+     +Y              D   S +
Sbjct: 1   MNQLLLEDCITGLAQQPAGSVDLAFADPPFNIGYTYDVYA-------------DSKES-Q 46

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y A+   W+ A  R L+P+GT W+         +    Q + F   + +VW  +  +  
Sbjct: 47  QYLAWCEEWIAAVYRALRPDGTFWLAIGDEYAAELKVAAQKIGFHTRSWVVWYYTFGVNC 106

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYD--------------ALKAANEDVQMRSDWL 185
               +F  +H  + +       + +TFN +              A K AN   ++  D  
Sbjct: 107 --KFKFTRSHAHIFYFVK--DREKFTFNSEDPANRIPSARQLVYADKRANPKGRLPDDTW 162

Query: 186 IPICSGSERLRN--------------------------------KDGEKLHPTQKPEALL 213
           I   +  E  R                                 K+ E  H  Q PE LL
Sbjct: 163 IIPPTVEEMARQTSATWVLRPQDLADRFTPTEDTWYFPRVAGTFKEREGFHGCQMPEQLL 222

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            RI+   + PG+++LDPF GS T+ AVAKKL R+++G ++ + Y+    KR+ S++P   
Sbjct: 223 GRIIRMCSNPGELVLDPFSGSATTLAVAKKLGRNYLGFDISEQYVTHGLKRLESIEPGDP 282

Query: 274 IELTVLTGKRTE 285
           ++          
Sbjct: 283 LDGAAEPTMSAP 294


>gi|227874929|ref|ZP_03993081.1| DNA methylase N-4/N-6 domain protein [Mobiluncus mulieris ATCC
           35243]
 gi|227844506|gb|EEJ54663.1| DNA methylase N-4/N-6 domain protein [Mobiluncus mulieris ATCC
           35243]
          Length = 446

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 116/310 (37%), Gaps = 30/310 (9%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSWDK 74
           +++  G +++ L  L    A  VD ++ DPPYN Q +         D   +       D+
Sbjct: 47  NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           +     Y  F    L A R +L   G+++V   +H    +  +   +             
Sbjct: 107 WDD-AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEIVWI 165

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWLIPI 188
                   RRF   H+T+++ + + +   +  +        A+      +      + P 
Sbjct: 166 YGSGGGSRRRFGRKHDTILFYAKNARRNFFDPDAVRVPYRAAIAPKRRGLFHPEGMVAPD 225

Query: 189 CSGSERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                R  N       +PTQKP A++ R L  +  PG ++LD F GSG++   A  L   
Sbjct: 226 VWDIPRPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGSGSTLVAAAGLGLR 285

Query: 248 FIGIEMKQDYIDIATKRIASVQP------LGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
           FIG+E     + +A KR+ S+         G+  L  L  KR  P             +P
Sbjct: 286 FIGVECAALGVHLARKRLVSLGASFGVWRSGDTHLMNLGDKRQPPHHP----------KP 335

Query: 302 GQILTNAQGN 311
           G++  +    
Sbjct: 336 GELNRDKSNR 345


>gi|20663549|pdb|1G60|A Chain A, Crystal Structure Of Methyltransferase Mboiia (Moraxella
           Bovis)
 gi|20663550|pdb|1G60|B Chain B, Crystal Structure Of Methyltransferase Mboiia (Moraxella
           Bovis)
          Length = 260

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 102/264 (38%), Gaps = 37/264 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI + N    L+++  KSV L   DPPYNL                    WD F S   
Sbjct: 5   NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKA----------------DWDSFDSHNE 48

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           + AFT  W+      L  +G+L++  +  N   I   L +      N I W K + M + 
Sbjct: 49  FLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMGSA 108

Query: 141 RGRRFQNAHETLIWASPSPKAKGYT---------------------FNYDALKAANEDVQ 179
           + R        L ++        Y                       N            
Sbjct: 109 KRRFSTGQETILFFSKSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGKRWFPNPNGRL 168

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               W        E++  K  +  H T KP  L+ RI+ +S+ P D++LD F GSGT+  
Sbjct: 169 CGEVWHFSSQRHKEKVNGKTVKLTHITPKPRDLIERIIRASSNPNDLVLDCFMGSGTTAI 228

Query: 240 VAKKLRRSFIGIEMKQDYIDIATK 263
           VAKKL R+FIG +M  +Y++ A  
Sbjct: 229 VAKKLGRNFIGCDMNAEYVNQANF 252


>gi|317008725|gb|ADU79305.1| adenine specific DNA methyltransferase (putative type II)
           [Helicobacter pylori India7]
          Length = 232

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 113/250 (45%), Gaps = 23/250 (9%)

Query: 22  KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
           +I   ++  +++        VD I  DPPYN+ +         +    +    WDK  +F
Sbjct: 3   QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK--NF 60

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +        W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 61  K-----LLEWIKRYAPLINPNGCIIIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        +       K  NE          P+  G ER++  
Sbjct: 116 RNLNRRYVQDTEFALWAVKKKAKWVF------NKPENEKYLRPLILKSPVVGGLERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L R+FIGIE++++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIELEKEYF 222

Query: 259 DIATKRIASV 268
             A KR+   
Sbjct: 223 QTAKKRLNLF 232


>gi|307636783|gb|ADN79233.1| type II DNA modification enzyme /methyl transferase [Helicobacter
           pylori 908]
 gi|325996968|gb|ADZ49176.1| Type II adenine methyltransferase [Helicobacter pylori 2017]
          Length = 281

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 97/243 (39%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      ++      WDK +     
Sbjct: 19  TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIMSVNKGDWDKENGINDI 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 77  DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEILKKINNDKQMRDVWSFPAIAPWEKANGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE +  +I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIEKESGFIKIS 250

Query: 262 TKR 264
             R
Sbjct: 251 MNR 253


>gi|303242614|ref|ZP_07329089.1| DNA methylase N-4/N-6 domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302589822|gb|EFL59595.1| DNA methylase N-4/N-6 domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 266

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 126/258 (48%), Gaps = 31/258 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I G+ +SVL  L  K++DLIFADPPYNL  +               +  D + +   Y 
Sbjct: 20  VINGDCMSVLPYLKEKTIDLIFADPPYNLGKDFG-------------NDSDNWKNKSEYL 66

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +  AW+  C RVLK NGT++++ S  NI  I   L+     I  + +    +       
Sbjct: 67  HWCYAWIDECFRVLKDNGTIYIMNSTQNISYIDVYLREKYNVI--NNIVWYYDSSGVQSK 124

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSGS 192
            ++ + +E +I A+ S KA  YTFN++ +K            +        +      G+
Sbjct: 125 YKYGSLYEPVIMANKSAKA-RYTFNWENIKVEARTGAVRKLIDYRKTPPQPYNNEKVPGN 183

Query: 193 ----ERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                R+R +    + HP+QKPE LL RI+ +S+ P +I+LDPF G+ T+  VA +L R 
Sbjct: 184 VWEFSRVRYRMSEYENHPSQKPEILLERIVKASSNPDEIVLDPFSGTFTTAVVANRLGRK 243

Query: 248 FIGIEMKQDYIDIATKRI 265
            IGIE+   Y  I  +R+
Sbjct: 244 SIGIELNDCYYGIGLRRV 261


>gi|119489624|ref|ZP_01622384.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
 gi|119454536|gb|EAW35684.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
          Length = 295

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 136/314 (43%), Gaps = 48/314 (15%)

Query: 18  EWKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +  +  G+++ +L   + + SVDLIF DPPYN+                 ++ +DK+ 
Sbjct: 7   DDQHTLFYGDALQILSSEISSNSVDLIFIDPPYNIGKRF-------------SNFYDKWE 53

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E Y  +    L  C RVLKP+GTL+V+ S   +      L+     +    +    + 
Sbjct: 54  SEEKYANWAYKLLDECLRVLKPSGTLYVMTSTQAMPYFDLYLRQKTVILSR--IVWHYDS 111

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA--------------------LKAANE 176
                 + F + +E ++    +     Y FN D                         N 
Sbjct: 112 SGVQAKKYFGSMYEPILHCVKNKN--NYIFNSDDIKVEAKTGAQRKLIDYRKAVPCQYNT 169

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           +    + W  P      R R ++ EK HP+QKPEALL RI+++S+    ++LDPF G+ T
Sbjct: 170 EKVPGNVWYFPRV----RYRMEEYEK-HPSQKPEALLERIILASSNQDSLVLDPFAGTFT 224

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           S AVAK+L R  I IE +++Y+ I  +R+  ++     +L   +   T          E+
Sbjct: 225 SAAVAKRLGRISISIESQEEYLKIGLRRVLGLKEYKGEKLLTPSKNHTRK---NKNSPEK 281

Query: 297 GLIQPGQILTNAQG 310
             IQ    + +A  
Sbjct: 282 NFIQKS--IFDADS 293


>gi|317010373|gb|ADU84120.1| typeII adenine methyltransferase [Helicobacter pylori SouthAfrica7]
          Length = 284

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 96/243 (39%), Positives = 133/243 (54%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + + +   VL      + DLIFADPPY L  +G L      +V      WDK       
Sbjct: 22  TLYQEDCNEVLPLF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEEGVNGI 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 80  DEFNHQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 139

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEILKKINNDKQMRDVWNFPAIAPWEKANGK--- 195

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKRKFIGIEKESEFVKIS 253

Query: 262 TKR 264
             R
Sbjct: 254 MNR 256


>gi|325995371|gb|ADZ50776.1| Type II DNA modification enzyme/methyl transferase [Helicobacter
           pylori 2018]
          Length = 281

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 97/243 (39%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      ++      WDK +     
Sbjct: 19  TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIMSVNKGDWDKENGINDI 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 77  DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFT 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K   + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEILKKINNDKQMRDVWSFPAIAPWEKANGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE +  +I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIEKESGFIKIS 250

Query: 262 TKR 264
             R
Sbjct: 251 MNR 253


>gi|307701753|ref|ZP_07638767.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
 gi|307613011|gb|EFN92266.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 441

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 116/310 (37%), Gaps = 30/310 (9%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSWDK 74
           +++  G +++ L  L    A  VD ++ DPPYN Q +         D   +       D+
Sbjct: 47  NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           +     Y  F    L A R +L   G+++V   +H    +  +   +             
Sbjct: 107 WDD-AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEIVWI 165

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWLIPI 188
                   RRF   H+T+++ + + +   +  +        A+      +      + P 
Sbjct: 166 YGSGGGSRRRFGRKHDTILFYAKNARRNFFDPDAVRVPYRAAIAPKRRGLFHPEGMVAPD 225

Query: 189 CSGSERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                R  N       +PTQKP A++ R L  +  PG ++LD F GSG++   A  L   
Sbjct: 226 VWDIPRPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGSGSTLVAAAGLGLR 285

Query: 248 FIGIEMKQDYIDIATKRIASVQPL------GNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
           FIG+E     + +A KR+ S+         G+  L  L  KR  P             +P
Sbjct: 286 FIGVECAALGVHLARKRLVSLGASFGVWRVGDTHLMNLGDKRQPPHHP----------KP 335

Query: 302 GQILTNAQGN 311
           G++  +    
Sbjct: 336 GELNRDESNR 345


>gi|317181656|dbj|BAJ59440.1| DNA methylase [Helicobacter pylori F57]
          Length = 369

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 102/273 (37%), Gaps = 22/273 (8%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    D+I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLDQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDAN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          ++ Y     A    C RVLK  G + V         I T      
Sbjct: 165 L--------------WQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
           F+I   ++W+        N+  +           A     +  +   +       E    
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKD 270

Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            + +  D       G      +   K   H    PE L+ R L   +   DI+LDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIVLDPFNGA 330

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GT+  VAK+L R FIGI++ + Y ++A  R+  
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVARARLKE 363


>gi|127465|sp|P23192|MTM2_MORBO RecName: Full=Modification methylase MboII; Short=M.MboII; AltName:
           Full=Adenine-specific methyltransferase MboII; AltName:
           Full=DNA MTase MboIIA
 gi|44181|emb|CAA40297.1| methyltransferase MboII [Moraxella bovis]
          Length = 260

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 99/265 (37%), Gaps = 39/265 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI + N    L+++  KSV L   DPPYNL                    WD F S   
Sbjct: 5   NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKA----------------DWDSFDSHNE 48

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  FT  W+      L  +G+L++  +  N   I   L +      N  +          
Sbjct: 49  FLPFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQN-WITWDKRDGMGS 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTF----------------------NYDALKAANEDV 178
             R F    ET+++ S S                              N           
Sbjct: 108 AKRGFSTGQETILFFSKSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGKRWFPNPNGR 167

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                W        E++  K  +  H T KP  L+ RI+ +S+ P D++LD F GSGT+ 
Sbjct: 168 LCGEVWHFSSQRHKEKVNGKTVKLTHITPKPRDLIERIIRASSNPNDLVLDCFMGSGTTA 227

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATK 263
            VAKKL R+FIG +M  +Y++ A  
Sbjct: 228 IVAKKLGRNFIGCDMNAEYVNQANF 252


>gi|261838927|gb|ACX98692.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           52]
          Length = 232

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/250 (30%), Positives = 116/250 (46%), Gaps = 23/250 (9%)

Query: 22  KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
           +I   ++  +++        VD I  DPPYN+ +        ++    +    WDK  +F
Sbjct: 3   QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKNAKRQGIDFGEWDK--NF 60

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +        W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 61  K-----LLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        +       K  NE          P+ SG ER++  
Sbjct: 116 RNINRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGLERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYF 222

Query: 259 DIATKRIASV 268
            IA KR+   
Sbjct: 223 QIAKKRLNLF 232


>gi|306818253|ref|ZP_07451983.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35239]
 gi|304648992|gb|EFM46287.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35239]
          Length = 451

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 116/310 (37%), Gaps = 30/310 (9%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSWDK 74
           +++  G +++ L  L    A  VD ++ DPPYN Q +         D   +       D+
Sbjct: 47  NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           +     Y  F    L A R +L   G+++V   +H    +  +   +             
Sbjct: 107 WDD-AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEIVWI 165

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWLIPI 188
                   RRF   H+T+++ + + +   +  +        A+      +      + P 
Sbjct: 166 YGSGGGSRRRFGRKHDTILFYAKNARRNFFDPDAVRVPYRAAIAPKRRGLFHPEGMVAPD 225

Query: 189 CSGSERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                R  N       +PTQKP A++ R L  +  PG ++LD F GSG++   A  L   
Sbjct: 226 VWDIPRPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGSGSTLVAAAGLGLR 285

Query: 248 FIGIEMKQDYIDIATKRIASVQPL------GNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
           FIG+E     + +A KR+ S+         G+  L  L  KR  P             +P
Sbjct: 286 FIGVECAALGVHLARKRLVSLGASFGVWRVGDTHLMNLGDKRQPPHHP----------KP 335

Query: 302 GQILTNAQGN 311
           G++  +    
Sbjct: 336 GELNRDESNR 345


>gi|218440461|ref|YP_002378790.1| methyltransferase [Cyanothece sp. PCC 7424]
 gi|218173189|gb|ACK71922.1| Site-specific DNA-methyltransferase (adenine-specific) [Cyanothece
           sp. PCC 7424]
          Length = 283

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 134/285 (47%), Gaps = 43/285 (15%)

Query: 18  EWKDKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
                I  G++++VL E++ ++S++LIF DPPYN+                  D +DK+ 
Sbjct: 7   NKDHLIFHGDALTVLLEEIDSESIELIFLDPPYNIG