BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus str. psy62] (375 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/375 (100%), Positives = 375/375 (100%) Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP Sbjct: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60 Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN Sbjct: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120 Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM Sbjct: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180 Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV Sbjct: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240 Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ Sbjct: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300 Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS Sbjct: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360 Query: 361 INTLRILVRKELYNC 375 INTLRILVRKELYNC Sbjct: 361 INTLRILVRKELYNC 375 >gi|254780896|ref|YP_003065309.1| ABC transporter membrane spanning protein (branched chain amino acid) [Candidatus Liberibacter asiaticus str. psy62] Length = 351 Score = 26.2 bits (56), Expect = 0.94, Method: Compositional matrix adjust. Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Query: 326 TELGSIHRVGAKVSGS-ETCNGWNFWYFEKL 355 T L I + A + G E C G NF+YF L Sbjct: 279 TSLSKIAKATAILIGVVELCCGMNFYYFNSL 309 >gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 24.6 bits (52), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 13/87 (14%) Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQL 57 +SQKN + E Q I E + ++ V LP +++ Q+N L Sbjct: 325 LSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQ----------QINYFL 374 Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAF 84 + H +D++ D W++ + + + Sbjct: 375 SKNPHFSIDSIIDDWNQLYDLKNHPSL 401 >gi|254780696|ref|YP_003065109.1| glutathione synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 316 Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%) Query: 209 PEALLSRILVSSTK----PGDIILDPFFGSGTSGA 239 P L+SR + T+ DII+ P +G+G +G Sbjct: 138 PPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGV 172 >gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus Liberibacter asiaticus str. psy62] Length = 346 Score = 23.5 bits (49), Expect = 6.2, Method: Compositional matrix adjust. Identities = 9/24 (37%), Positives = 14/24 (58%) Query: 139 NFRGRRFQNAHETLIWASPSPKAK 162 +FR RR Q + +L+W P K + Sbjct: 173 SFRMRRIQKIYWSLVWGIPKNKKE 196 >gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 23.1 bits (48), Expect = 7.3, Method: Compositional matrix adjust. Identities = 8/13 (61%), Positives = 10/13 (76%) Query: 223 PGDIILDPFFGSG 235 PG +ILD FG+G Sbjct: 36 PGKVILDATFGAG 48 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.136 0.415 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 246,995 Number of Sequences: 1233 Number of extensions: 10061 Number of successful extensions: 24 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 8 length of query: 375 length of database: 328,796 effective HSP length: 75 effective length of query: 300 effective length of database: 236,321 effective search space: 70896300 effective search space used: 70896300 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)