BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780466|ref|YP_003064879.1| putative modification
methylase [Candidatus Liberibacter asiaticus str. psy62]
         (375 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 375

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/375 (100%), Positives = 375/375 (100%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP
Sbjct: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN
Sbjct: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM
Sbjct: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV
Sbjct: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ
Sbjct: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS
Sbjct: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360

Query: 361 INTLRILVRKELYNC 375
           INTLRILVRKELYNC
Sbjct: 361 INTLRILVRKELYNC 375


>gi|254780896|ref|YP_003065309.1| ABC transporter membrane spanning protein (branched chain amino
           acid) [Candidatus Liberibacter asiaticus str. psy62]
          Length = 351

 Score = 26.2 bits (56), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 326 TELGSIHRVGAKVSGS-ETCNGWNFWYFEKL 355
           T L  I +  A + G  E C G NF+YF  L
Sbjct: 279 TSLSKIAKATAILIGVVELCCGMNFYYFNSL 309


>gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 429

 Score = 24.6 bits (52), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 13/87 (14%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQL 57
           +SQKN +   E Q  I E   + ++     V      LP +++           Q+N  L
Sbjct: 325 LSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQ----------QINYFL 374

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAF 84
            +  H  +D++ D W++    + + + 
Sbjct: 375 SKNPHFSIDSIIDDWNQLYDLKNHPSL 401


>gi|254780696|ref|YP_003065109.1| glutathione synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 316

 Score = 24.3 bits (51), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 209 PEALLSRILVSSTK----PGDIILDPFFGSGTSGA 239
           P  L+SR +   T+      DII+ P +G+G +G 
Sbjct: 138 PPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGV 172


>gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 346

 Score = 23.5 bits (49), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 139 NFRGRRFQNAHETLIWASPSPKAK 162
           +FR RR Q  + +L+W  P  K +
Sbjct: 173 SFRMRRIQKIYWSLVWGIPKNKKE 196


>gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 23.1 bits (48), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 223 PGDIILDPFFGSG 235
           PG +ILD  FG+G
Sbjct: 36  PGKVILDATFGAG 48


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.136    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,995
Number of Sequences: 1233
Number of extensions: 10061
Number of successful extensions: 24
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 8
length of query: 375
length of database: 328,796
effective HSP length: 75
effective length of query: 300
effective length of database: 236,321
effective search space: 70896300
effective search space used: 70896300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)