Query gi|254780467|ref|YP_003064880.1| exodeoxyribonuclease VII small subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 86
No_of_seqs 107 out of 1019
Neff 5.4
Searched_HMMs 23785
Date Mon May 30 11:26:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780467.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vp7_A Exodeoxyribonuclease VI 99.7 2E-16 8.6E-21 127.5 8.7 69 14-83 30-98 (100)
2 3he4_A Synzip6; heterodimeric 70.0 1.9 8.2E-05 23.0 2.1 33 20-52 19-51 (56)
3 2r5x_A Protein YUGN, uncharact 26.1 33 0.0014 15.0 2.3 25 48-72 99-123 (129)
4 1yw5_A Peptidyl prolyl CIS/tra 24.7 36 0.0015 14.7 4.4 33 14-46 94-126 (177)
5 3i6c_A Peptidyl-prolyl CIS-tra 22.1 41 0.0017 14.4 4.4 35 13-47 39-73 (123)
6 3iuo_A ATP-dependent DNA helic 19.9 45 0.0019 14.1 2.5 20 10-29 40-59 (122)
7 2pms_C Pneumococcal surface pr 18.4 49 0.0021 13.9 2.7 56 12-67 7-62 (125)
8 2ve7_C Kinetochore protein NUF 17.8 50 0.0021 13.8 2.1 45 37-81 143-187 (250)
9 2dl1_A Spartin; SPG20, MIT, st 17.7 51 0.0021 13.8 8.2 56 14-71 17-97 (116)
10 2itk_A Peptidyl-prolyl CIS-tra 17.2 52 0.0022 13.7 4.4 33 14-46 84-116 (167)
No 1
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, structural genomics, joint center for structural genomics, JCSG, PSI; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=99.66 E-value=2e-16 Score=127.48 Aligned_cols=69 Identities=29% Similarity=0.521 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8999999999999999877999999999999999999999999999999999999831588733468999
Q gi|254780467|r 14 LPFEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQIKLNRDNKIQSVKPFD 83 (86)
Q Consensus 14 ~sfEea~~~Le~Iv~~LE~g~l~Lees~~~ye~G~~L~~~C~~~L~~ae~ki~~l~~~~~~~~~~~~p~d 83 (86)
.|||++|.+|++||.+||+|++|||+|+++|++|+.|+++|+++|+.|++||++|..+..+.. ...|+|
T Consensus 30 ~SFEeal~~LE~IV~~LE~g~l~Leesl~lye~G~~L~k~C~~~L~~aE~kV~~L~~~~~~~~-~~~~~d 98 (100)
T 1vp7_A 30 QDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPL-DPAALD 98 (100)
T ss_dssp CSHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCC
T ss_conf 799999999999999996699899999999999999999999999999999999974767888-989988
No 2
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=69.97 E-value=1.9 Score=23.02 Aligned_cols=33 Identities=33% Similarity=0.470 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999987799999999999999999999
Q gi|254780467|r 20 VSELENIIAKLERGDVTLDESISIYERGEALKS 52 (86)
Q Consensus 20 ~~~Le~Iv~~LE~g~l~Lees~~~ye~G~~L~~ 52 (86)
-..||.||.+||+++..|+.-++..+..+.-+.
T Consensus 19 naklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 105999999996553008888988998999888
No 3
>2r5x_A Protein YUGN, uncharacterized conserved protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Geobacillus kaustophilus HTA426}
Probab=26.12 E-value=33 Score=14.99 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999998315
Q gi|254780467|r 48 EALKSHCEFLLCSAEKRIEQIKLNR 72 (86)
Q Consensus 48 ~~L~~~C~~~L~~ae~ki~~l~~~~ 72 (86)
..+++.|+.+|++.+..++.+..+.
T Consensus 99 ~~vv~~~~~~L~~l~~~L~~~~~~~ 123 (129)
T 2r5x_A 99 SSLVSQCQNVLAQVKSELEKIKEEG 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8999999999999999999998850
No 4
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=24.67 E-value=36 Score=14.69 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 899999999999999987799999999999999
Q gi|254780467|r 14 LPFEEAVSELENIIAKLERGDVTLDESISIYER 46 (86)
Q Consensus 14 ~sfEea~~~Le~Iv~~LE~g~l~Lees~~~ye~ 46 (86)
-+-++|...+.+|.+++.+|....+++...|-.
T Consensus 94 rskeeA~~~~~~i~~~i~~g~~~F~~lA~~~Sd 126 (177)
T 1yw5_A 94 RTRDESIQILKKHLERILSGEVKLSELANTESD 126 (177)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 469999999999999998485549999999583
No 5
>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A
Probab=22.11 E-value=41 Score=14.37 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=30.2
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 28999999999999999877999999999999999
Q gi|254780467|r 13 HLPFEEAVSELENIIAKLERGDVTLDESISIYERG 47 (86)
Q Consensus 13 ~~sfEea~~~Le~Iv~~LE~g~l~Lees~~~ye~G 47 (86)
..+-++|...++.|..++.+|..+.+++...|-.+
T Consensus 39 ~~~k~eA~~~~~~i~~~i~~g~~~F~~lA~~~Sd~ 73 (123)
T 3i6c_A 39 TRTQEEALELINGYIQKIKSGEEDFESLASQFSDC 73 (123)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
T ss_conf 43099999999999999980744099999995789
No 6
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, domain, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.60A {Porphyromonas gingivalis}
Probab=19.93 E-value=45 Score=14.08 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=16.6
Q ss_pred HHHHCCHHHHHHHHHHHHHH
Q ss_conf 16628999999999999999
Q gi|254780467|r 10 DLSHLPFEEAVSELENIIAK 29 (86)
Q Consensus 10 ~~~~~sfEea~~~Le~Iv~~ 29 (86)
..+.++|.+-+.++|.||..
T Consensus 40 ~akg~~~~ell~E~E~IV~S 59 (122)
T 3iuo_A 40 VSHGLDFPELLSEVETIVYS 59 (122)
T ss_dssp HHTTCCHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHC
T ss_conf 85699899999999999835
No 7
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein- protein complex, metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=18.38 E-value=49 Score=13.85 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=35.7
Q ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 62899999999999999987799999999999999999999999999999999999
Q gi|254780467|r 12 SHLPFEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQ 67 (86)
Q Consensus 12 ~~~sfEea~~~Le~Iv~~LE~g~l~Lees~~~ye~G~~L~~~C~~~L~~ae~ki~~ 67 (86)
....++..+.+|..-+..|+..--.+++.+..........+.....|......+..
T Consensus 7 ~~~~~~~~i~~L~~~~~~Le~~~~~~e~~~~~~~~~~~~~~~l~~~l~~~~~~l~~ 62 (125)
T 2pms_C 7 EEVAPQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSK 62 (125)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88778989999999999999889989877889999999999999999999999999
No 8
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC24; HEC1, NDC80, nucleus, mitosis, centromere, cell cycle, microtubule, coiled-coil, coiled coil; 2.88A {Homo sapiens}
Probab=17.81 E-value=50 Score=13.77 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999999999999999999999999999999998315887334689
Q gi|254780467|r 37 LDESISIYERGEALKSHCEFLLCSAEKRIEQIKLNRDNKIQSVKP 81 (86)
Q Consensus 37 Lees~~~ye~G~~L~~~C~~~L~~ae~ki~~l~~~~~~~~~~~~p 81 (86)
.++.+..|+.-..-.+.++....+++++|+.+....+.......|
T Consensus 143 ~~e~~~e~~~~~ek~~~l~~~~~Ele~kIe~lk~~ided~t~v~~ 187 (250)
T 2ve7_C 143 YMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIP 187 (250)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 999999988899999999999999997899999876300236677
No 9
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=17.73 E-value=51 Score=13.76 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999998779999999999999999-------------------------99999999999999999999
Q gi|254780467|r 14 LPFEEAVSELENIIAKLERGDVTLDESISIYERGE-------------------------ALKSHCEFLLCSAEKRIEQI 68 (86)
Q Consensus 14 ~sfEea~~~Le~Iv~~LE~g~l~Lees~~~ye~G~-------------------------~L~~~C~~~L~~ae~ki~~l 68 (86)
-.|..||..+..-|+.=|.|. .++++.+|+.|+ .|..+-...|..+..|+..|
T Consensus 17 ~~~~~Af~~I~kAL~~DE~g~--k~~Al~~Yk~gi~~Le~g~aIp~~~~~~~g~~we~ar~lq~KMk~~l~~v~~RL~~L 94 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDELGQ--KEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEIL 94 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999851523489--999999999999999988366667998777469999999999999999999999999
Q ss_pred HHC
Q ss_conf 831
Q gi|254780467|r 69 KLN 71 (86)
Q Consensus 69 ~~~ 71 (86)
...
T Consensus 95 e~~ 97 (116)
T 2dl1_A 95 EKG 97 (116)
T ss_dssp HHH
T ss_pred HHC
T ss_conf 851
No 10
>2itk_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; PIN1, isomerase, WW domain; HET: D11 NAL PE4; 1.45A {Homo sapiens} SCOP: b.72.1.1 d.26.1.1 PDB: 2q5a_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 1f8a_B* 3kad_A* 3kaf_A* 2zr6_A* 1nmv_A 1pin_A* 2zr4_A* 2zr5_A* 2zqt_A* 2zqs_A* 2zqv_A* 2zqu_A 2f21_A* 1zcn_A* ...
Probab=17.20 E-value=52 Score=13.68 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 899999999999999987799999999999999
Q gi|254780467|r 14 LPFEEAVSELENIIAKLERGDVTLDESISIYER 46 (86)
Q Consensus 14 ~sfEea~~~Le~Iv~~LE~g~l~Lees~~~ye~ 46 (86)
-|-++|...++.|..++.+|..+.+++...|-.
T Consensus 84 rsk~eA~~~~~~i~~~i~~g~~~F~~lA~~~Sd 116 (167)
T 2itk_A 84 RTKEEALELINGYIQKIKSGEEDFESLASQFSD 116 (167)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
T ss_conf 599999999999999986033279999998574
Done!