Query gi|254780467|ref|YP_003064880.1| exodeoxyribonuclease VII small subunit [Candidatus Liberibacter asiaticus str. psy62] Match_columns 86 No_of_seqs 107 out of 1019 Neff 5.4 Searched_HMMs 13730 Date Wed Jun 1 06:37:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780467.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1vp7a_ a.7.13.1 (A:) Exonucle 99.6 3.6E-15 2.6E-19 117.8 9.1 60 13-72 5-64 (68) 2 d2a2ma1 a.132.1.3 (A:10-240) H 25.3 20 0.0015 14.8 2.6 36 14-50 184-219 (231) 3 d1pina2 d.26.1.1 (A:45-163) Mi 19.8 26 0.0019 14.1 4.4 34 14-47 36-69 (119) 4 d1orja_ a.24.19.1 (A:) Flagell 18.8 28 0.002 13.9 2.2 22 14-35 23-44 (126) 5 d1wtya_ a.24.16.2 (A:) Probabl 16.7 31 0.0023 13.6 2.0 39 15-54 2-40 (116) 6 d1pgya_ a.5.2.1 (A:) Auxilin-l 13.2 31 0.0023 13.5 1.1 29 27-55 11-39 (47) 7 d1z72a1 a.132.1.3 (A:4-220) Pu 13.0 39 0.0028 13.0 5.7 37 14-50 172-208 (217) 8 d2pwwa1 d.129.11.1 (A:1-114) U 12.3 41 0.003 12.8 2.3 18 48-65 96-113 (114) 9 d1j6ya_ d.26.1.1 (A:) Mitotic 11.1 44 0.0032 12.6 3.4 35 13-47 36-70 (120) 10 d1dqaa4 d.179.1.1 (A:462-586,A 10.3 47 0.0034 12.4 2.5 30 24-53 4-36 (292) No 1 >d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]} Probab=99.58 E-value=3.6e-15 Score=117.80 Aligned_cols=60 Identities=32% Similarity=0.571 Sum_probs=57.0 Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 289999999999999998779999999999999999999999999999999999998315 Q gi|254780467|r 13 HLPFEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQIKLNR 72 (86) Q Consensus 13 ~~sfEea~~~Le~Iv~~LE~g~l~Lees~~~ye~G~~L~~~C~~~L~~ae~ki~~l~~~~ 72 (86) ..|||++|.+||+||++||+|++|||+|+++|++|++|+++|+++|+.|++||++|..+. T Consensus 5 p~sfEe~l~~LE~IV~~LE~g~l~Leesl~~ye~G~~L~~~C~~~L~~ae~ki~~l~~~~ 64 (68) T d1vp7a_ 5 PQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDL 64 (68) T ss_dssp CCSHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 979999999999999998679998999999999999999999999999999999997256 No 2 >d2a2ma1 a.132.1.3 (A:10-240) Hypothetical protein BT3146 {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=25.35 E-value=20 Score=14.77 Aligned_cols=36 Identities=11% Similarity=0.271 Sum_probs=23.1 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 8999999999999999877999999999999999999 Q gi|254780467|r 14 LPFEEAVSELENIIAKLERGDVTLDESISIYERGEAL 50 (86) Q Consensus 14 ~sfEea~~~Le~Iv~~LE~g~l~Lees~~~ye~G~~L 50 (86) .+|++...++..+|+++ .+..+-+.....|.+++.| T Consensus 184 ~~f~~~v~~~~~~ld~~-~~~~~~e~~~~iF~~~~~l 219 (231) T d2a2ma1 184 GGTPNGAYQMGNMLEQY-RDKIDEDKAVEIFNTAMNY 219 (231) T ss_dssp CSCCHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHH T ss_conf 03899999999999987-3516899999999999999 No 3 >d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]} Probab=19.77 E-value=26 Score=14.05 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=29.7 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 8999999999999999877999999999999999 Q gi|254780467|r 14 LPFEEAVSELENIIAKLERGDVTLDESISIYERG 47 (86) Q Consensus 14 ~sfEea~~~Le~Iv~~LE~g~l~Lees~~~ye~G 47 (86) .+-++|...++.|..++.+|..+.+++...|-.+ T Consensus 36 ~~k~ea~~~~~~i~~~i~~g~~~F~~lA~~~Sd~ 69 (119) T d1pina2 36 RTKEEALELINGYIQKIKSGEEDFESLASQFSDC 69 (119) T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSS T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC T ss_conf 0499999999999999981835199999883888 No 4 >d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]} Probab=18.80 E-value=28 Score=13.92 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=10.5 Q ss_pred CCHHHHHHHHHHHHHHHHCCCC Q ss_conf 8999999999999999877999 Q gi|254780467|r 14 LPFEEAVSELENIIAKLERGDV 35 (86) Q Consensus 14 ~sfEea~~~Le~Iv~~LE~g~l 35 (86) +-|+.++..|..-...++.++. T Consensus 23 mLyd~~i~~l~~a~~a~~~~d~ 44 (126) T d1orja_ 23 LLYDKAIECLERAIEIYDQVNE 44 (126) T ss_dssp HHHHHHHHHHHHHHHTGGGTTS T ss_pred HHHHHHHHHHHHHHHHHHHCCH T ss_conf 9999999999999999982677 No 5 >d1wtya_ a.24.16.2 (A:) Probable nucleotidyltransferase subunit TTHA0048 {Thermus thermophilus [TaxId: 274]} Probab=16.66 E-value=31 Score=13.59 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=27.0 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999998779999999999999999999999 Q gi|254780467|r 15 PFEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHC 54 (86) Q Consensus 15 sfEea~~~Le~Iv~~LE~g~l~Lees~~~ye~G~~L~~~C 54 (86) ||+.|+.+|++++..- ..++-.+-.+..||=-..|+=.. T Consensus 2 ~l~kAl~~L~e~~~~~-~~~~~rdg~IqrFE~t~El~WK~ 40 (116) T d1wtya_ 2 SLARAVERLKAALERP-KDEFIRDSAIQRFEFTFELAWKT 40 (116) T ss_dssp CHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH T ss_conf 0899999999988075-11999999999999999999999 No 6 >d1pgya_ a.5.2.1 (A:) Auxilin-like protein Swa2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=13.24 E-value=31 Score=13.55 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=21.8 Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99987799999999999999999999999 Q gi|254780467|r 27 IAKLERGDVTLDESISIYERGEALKSHCE 55 (86) Q Consensus 27 v~~LE~g~l~Lees~~~ye~G~~L~~~C~ 55 (86) +++|=|=.+++|++...|++|+-.-...+ T Consensus 11 iAkLMSLGL~id~At~~Ye~gi~yE~~l~ 39 (47) T d1pgya_ 11 IARLMSLGLSIEEATEFYENDVTYERYLE 39 (47) T ss_dssp HHHHHHHCCCSHHHHHHHHHHCSSHHHHH T ss_pred HHHHHHCCCCHHHHHHHHHCCCHHHHHHH T ss_conf 99999813677888999965742999999 No 7 >d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId: 1313]} Probab=13.00 E-value=39 Score=12.96 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=30.3 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 8999999999999999877999999999999999999 Q gi|254780467|r 14 LPFEEAVSELENIIAKLERGDVTLDESISIYERGEAL 50 (86) Q Consensus 14 ~sfEea~~~Le~Iv~~LE~g~l~Lees~~~ye~G~~L 50 (86) ..|.+.+..|..+|.++-...-.++...+.|.+++.| T Consensus 172 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~f~~~~~l 208 (217) T d1z72a1 172 PFFAEWVQFLVDELNRVGKNREDLTELQQRWNQAVAL 208 (217) T ss_dssp HHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 8799999999999998829999999999999999999 No 8 >d2pwwa1 d.129.11.1 (A:1-114) Uncharacterized protein ABC2387 {Bacillus clausii [TaxId: 79880]} Probab=12.26 E-value=41 Score=12.82 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=13.5 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999 Q gi|254780467|r 48 EALKSHCEFLLCSAEKRI 65 (86) Q Consensus 48 ~~L~~~C~~~L~~ae~ki 65 (86) ..+++.|+.+|.+....+ T Consensus 96 ~~vv~~~~~~L~~i~~~l 113 (114) T d2pwwa1 96 QAVIDKCNNKLALLAKTI 113 (114) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHC T ss_conf 999999999999999860 No 9 >d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=11.07 E-value=44 Score=12.57 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=29.6 Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 28999999999999999877999999999999999 Q gi|254780467|r 13 HLPFEEAVSELENIIAKLERGDVTLDESISIYERG 47 (86) Q Consensus 13 ~~sfEea~~~Le~Iv~~LE~g~l~Lees~~~ye~G 47 (86) ..+-+++...+.+|..++.+|..+-++....|-.. T Consensus 36 ~~~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~Sd~ 70 (120) T d1j6ya_ 36 TTTREAAVEQLKSIREDIVSGKANFEEVATRVSDC 70 (120) T ss_dssp CCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSCH T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC T ss_conf 01099999999999999873735499999982887 No 10 >d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Probab=10.31 E-value=47 Score=12.40 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=21.3 Q ss_pred HHHHHHHHCCCCCHH---HHHHHHHHHHHHHHH Q ss_conf 999999877999999---999999999999999 Q gi|254780467|r 24 ENIIAKLERGDVTLD---ESISIYERGEALKSH 53 (86) Q Consensus 24 e~Iv~~LE~g~l~Le---es~~~ye~G~~L~~~ 53 (86) ++||..+.+|.+++- ..+..+++++.+-+. T Consensus 4 ~e~~~~v~~g~i~~y~lE~~l~~~~~av~iRR~ 36 (292) T d1dqaa4 4 AEIIQLVNAKHIPAYKLETLIETHERGVSIRRQ 36 (292) T ss_dssp HHHHHHHHHTTCCGGGHHHHSSSHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHH T ss_conf 999999976998468898741786789999999 Done!