RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780467|ref|YP_003064880.1| exodeoxyribonuclease VII small
subunit [Candidatus Liberibacter asiaticus str. psy62]
(86 letters)
>gnl|CDD|145648 pfam02609, Exonuc_VII_S, Exonuclease VII small subunit. This
family consist of exonuclease VII, small subunit
EC:3.1.11.6 This enzyme catalyses exonucleolytic
cleavage in either 5'->3' or 3'->5' direction to yield
5'-phosphomononucleotides. This exonuclease VII enzyme
is composed of one large subunit and 4 small ones.
Length = 53
Score = 62.5 bits (153), Expect = 3e-11
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 16 FEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQI 68
FEEA++ELE I+ KLE G+++L+ES+ +YE G L HC+ L AE++IE +
Sbjct: 1 FEEALAELEEIVEKLESGELSLEESLKLYEEGVKLLKHCQKKLEEAEQKIEIL 53
>gnl|CDD|31908 COG1722, XseB, Exonuclease VII small subunit [DNA replication,
recombination, and repair].
Length = 81
Score = 53.8 bits (129), Expect = 9e-09
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 10 DLSHLPFEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQIK 69
S L FEEA++ELE I+ LE G++ L+E++ +ERG AL C+ L AE+R+E++
Sbjct: 6 PKSALSFEEALAELEEIVESLESGELPLEEALKEFERGMALYKECQEKLQQAEQRVEKLL 65
Query: 70 LNRDNKI 76
+ +
Sbjct: 66 EEDEEED 72
>gnl|CDD|31167 COG0825, AccA, Acetyl-CoA carboxylase alpha subunit [Lipid
metabolism].
Length = 317
Score = 27.9 bits (62), Expect = 0.63
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 11 LSHLPFEEAVSELENIIAKL----ERGDVTLDESISIYE 45
++L FE+ ++ELE I +L E DV L + I E
Sbjct: 2 ANYLDFEKPIAELEAKIDELKALAEENDVDLSDEIERLE 40
>gnl|CDD|112085 pfam03255, ACCA, Acetyl co-enzyme A carboxylase
carboxyltransferase alpha subunit. Acetyl co-enzyme A
carboxylase carboxyltransferase is composed of an alpha
and beta subunit.
Length = 145
Score = 27.3 bits (61), Expect = 0.93
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 13 HLPFEEAVSELENIIAKL----ERGDVTLDESISIYER 46
L FE+ ++ELE I +L + DV + + I E+
Sbjct: 2 LLEFEKPLAELEAKIDELRKLARKNDVDVSDEIHRLEK 39
>gnl|CDD|32398 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
[Inorganic ion transport and metabolism].
Length = 681
Score = 26.3 bits (58), Expect = 1.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 35 VTLDESISIYERGEALKSHCEFLLCSAEKRIEQIKLNRDNKI 76
V L + + I R + L+SH EF+ +A+ R+ + L +I
Sbjct: 351 VELAKKLGIELREDDLQSHAEFVPFTAQTRMSGVDLPGGREI 392
>gnl|CDD|177040 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 26.1 bits (58), Expect = 2.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 57 LLCSAEKRIEQIKLNRDNKIQSV 79
L AE I Q +++ NKIQ V
Sbjct: 1175 FLIGAELSIAQSQISLVNKIQKV 1197
>gnl|CDD|99919 cd05536, POLBc_B3, DNA polymerase type-B B3 subfamily catalytic
domain. Archaeal proteins that are involved in DNA
replication are similar to those from eukaryotes. Some
members of the archaea also possess multiple family B
DNA polymerases (B1, B2 and B3). So far there is no
specific function(s) has been assigned for different
members of the archaea type B DNA polymerases.
Phylogenetic analyses of eubacterial, archaeal, and
eukaryotic family B DNA polymerases are support
independent gene duplications during the evolution of
archaeal and eukaryotic family B DNA polymerases.
Structural comparison of the thermostable DNA polymerase
type B to its mesostable homolog suggests several
adaptations to high temperature such as shorter loops,
disulfide bridges, and increasing electrostatic
interaction at subdomain interfaces..
Length = 371
Score = 25.7 bits (57), Expect = 2.6
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 17 EEAVSELENIIAKLERGDVTLDESISIYE 45
EEAV ++ +I KL+RG+V ++ + I++
Sbjct: 253 EEAVKIVKEVIEKLKRGEVPPEKLV-IWK 280
>gnl|CDD|35560 KOG0339, KOG0339, KOG0339, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 731
Score = 25.4 bits (55), Expect = 3.3
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 15 PFEEAVSELENIIAKLERG----DVTLDESISIYERGEALKSHCEFLLCSAEKRIEQIKL 70
P E S++ + K + V + S +E+ + LK E ++ + + I+ +K+
Sbjct: 304 PTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM 363
>gnl|CDD|36764 KOG1551, KOG1551, KOG1551, Uncharacterized conserved protein
[Function unknown].
Length = 371
Score = 25.1 bits (54), Expect = 4.3
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 15 PFEEAVSELENIIAKLERGDVTLDESISIYERGEALK 51
P E+ + LE + + G T+ E + ++ A
Sbjct: 157 PEEQIIHMLEYVTDLFKMGRATIQEFVKLFTWSSADG 193
>gnl|CDD|144635 pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II.
Length = 283
Score = 24.3 bits (54), Expect = 6.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 10 DLSHLPFEE 18
D SHLPFEE
Sbjct: 102 DGSHLPFEE 110
>gnl|CDD|30540 COG0191, Fba, Fructose/tagatose bisphosphate aldolase [Carbohydrate
transport and metabolism].
Length = 286
Score = 24.0 bits (52), Expect = 8.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 10 DLSHLPFEEAVSELENIIAKLERGDVTL 37
D SHLPFEE ++ + ++ V++
Sbjct: 105 DGSHLPFEENIAITKEVVEFAHAYGVSV 132
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.313 0.133 0.360
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 960,638
Number of extensions: 39774
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 24
Length of query: 86
Length of database: 6,263,737
Length adjustment: 55
Effective length of query: 31
Effective length of database: 5,075,242
Effective search space: 157332502
Effective search space used: 157332502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)