RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780467|ref|YP_003064880.1| exodeoxyribonuclease VII small subunit [Candidatus Liberibacter asiaticus str. psy62] (86 letters) >d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]} Length = 68 Score = 64.7 bits (158), Expect = 2e-12 Identities = 19/56 (33%), Positives = 38/56 (67%) Query: 16 FEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQIKLN 71 FE A++ELE++++ +E G + L++S+S Y RG L C+ L AE++++ ++ + Sbjct: 8 FETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGD 63 >d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Score = 24.5 bits (53), Expect = 2.8 Identities = 5/33 (15%), Positives = 9/33 (27%) Query: 5 SINLDDLSHLPFEEAVSELENIIAKLERGDVTL 37 +N L EA + +R + Sbjct: 59 EVNGLTLRGKEHREAARIIAEAFKTKDRDYIDF 91 >d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199 Score = 23.3 bits (49), Expect = 5.8 Identities = 5/17 (29%), Positives = 9/17 (52%) Query: 16 FEEAVSELENIIAKLER 32 FEE +++ +I L Sbjct: 172 FEEIYHKVKRVIEDLSG 188 >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} Length = 316 Score = 23.1 bits (49), Expect = 6.5 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 7/40 (17%) Query: 14 LPFEEAVSELENIIAKL-------ERGDVTLDESISIYER 46 L FE+ ++ELE I L E+ D+ +DE + Sbjct: 3 LDFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLRE 42 >d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92 Score = 22.9 bits (49), Expect = 8.2 Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Query: 5 SINLDDLSHLPFEEAVSELENIIAKLERGDVTL 37 +N + ++ ++AV L +I+ K G + L Sbjct: 56 QVNDINFENMSNDDAVRVLRDIVHK--PGPIVL 86 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.313 0.133 0.360 Gapped Lambda K H 0.267 0.0694 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 302,022 Number of extensions: 11868 Number of successful extensions: 62 Number of sequences better than 10.0: 1 Number of HSP's gapped: 62 Number of HSP's successfully gapped: 14 Length of query: 86 Length of database: 2,407,596 Length adjustment: 51 Effective length of query: 35 Effective length of database: 1,707,366 Effective search space: 59757810 Effective search space used: 59757810 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 47 (22.0 bits)