RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780467|ref|YP_003064880.1| exodeoxyribonuclease VII small
subunit [Candidatus Liberibacter asiaticus str. psy62]
         (86 letters)



>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB
          {Bordetella pertussis [TaxId: 520]}
          Length = 68

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 19/56 (33%), Positives = 38/56 (67%)

Query: 16 FEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQIKLN 71
          FE A++ELE++++ +E G + L++S+S Y RG  L   C+  L  AE++++ ++ +
Sbjct: 8  FETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGD 63


>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 103

 Score = 24.5 bits (53), Expect = 2.8
 Identities = 5/33 (15%), Positives = 9/33 (27%)

Query: 5  SINLDDLSHLPFEEAVSELENIIAKLERGDVTL 37
           +N   L      EA   +       +R  +  
Sbjct: 59 EVNGLTLRGKEHREAARIIAEAFKTKDRDYIDF 91


>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 199

 Score = 23.3 bits (49), Expect = 5.8
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 16  FEEAVSELENIIAKLER 32
           FEE   +++ +I  L  
Sbjct: 172 FEEIYHKVKRVIEDLSG 188


>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
          transferase subunit alpha, AccA {Escherichia coli
          [TaxId: 562]}
          Length = 316

 Score = 23.1 bits (49), Expect = 6.5
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 7/40 (17%)

Query: 14 LPFEEAVSELENIIAKL-------ERGDVTLDESISIYER 46
          L FE+ ++ELE  I  L       E+ D+ +DE +     
Sbjct: 3  LDFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLRE 42


>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled
          homolog Dvl-2 {African clawed frog (Xenopus laevis)
          [TaxId: 8355]}
          Length = 92

 Score = 22.9 bits (49), Expect = 8.2
 Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 5  SINLDDLSHLPFEEAVSELENIIAKLERGDVTL 37
           +N  +  ++  ++AV  L +I+ K   G + L
Sbjct: 56 QVNDINFENMSNDDAVRVLRDIVHK--PGPIVL 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.133    0.360 

Gapped
Lambda     K      H
   0.267   0.0694    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 302,022
Number of extensions: 11868
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 14
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)