HHsearch alignment for GI: 254780468 and conserved domain: COG2200

>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms].
Probab=100.00  E-value=0  Score=466.79  Aligned_cols=250  Identities=32%  Similarity=0.576  Sum_probs=237.4

Q ss_pred             HHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999874364100355411468822144210000000035775530230357888977996799899999999999998
Q gi|254780468|r  706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW  785 (963)
Q Consensus       706 ~~~~~l~~al~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~~l~~~  785 (963)
T Consensus         3 ~~~~~l~~al~~~~~~l~yQPiv~~~~~~~~g~EaL~R~~~~~~g~i~p~~Fi~~ae~~gli~~l~~~v~~~a~~~~~~~   82 (256)
T COG2200           3 QLERDLRQALENGEFSLYYQPIVDLATGRIVGYEALLRWRHPDGGLISPGEFIPLAEETGLIVELGRWVLEEACRQLRTW   82 (256)
T ss_pred             HHHHHHHHHHHHCCEEEEECCEEECCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             48999999998097669972468757797888999998746998867989999999884989999999999999999853


Q ss_pred             HHHCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             87158998499997697794391489999999988199954699997133775099989999999998898999918877
Q gi|254780468|r  786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT  865 (963)
Q Consensus       786 ~~~~~~~~~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~  865 (963)
T Consensus        83 ~~~~---~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~~l~~EitE~~~~~~~~~~~~~l~~Lr~~G~~ialDDFGt  159 (256)
T COG2200          83 PRAG---PLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPHRLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGT  159 (256)
T ss_pred             CCCC---CEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             2138---8079998488882865699999999997399912079997487122498999999999997799899978999


Q ss_pred             CHHHHHHHHHCCCCEEEEEHHHHCCCC--HHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf             645488897279989997168853999--457999999999999779809997039989999899809989940520689
Q gi|254780468|r  866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP  943 (963)
Q Consensus       866 g~ssl~~L~~l~~d~iKiD~sfv~~~~--~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P  943 (963)
T Consensus       160 G~ssl~~L~~l~~d~iKID~~fv~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGVEt~~ql~~L~~~G~~~~QGy~f~~P  239 (256)
T COG2200         160 GYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGVETEEQLDLLRELGCDYLQGYLFSRP  239 (256)
T ss_pred             CHHHHHHHHHCCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             71659999857997499969999863038311799999999999749989997069699999999779998854741788


Q ss_pred             CCHHHHHHHHHHHCC
Q ss_conf             998999999985161
Q gi|254780468|r  944 LGFNSILKLLKERFP  958 (963)
Q Consensus       944 ~~~~~~~~~l~~~~~  958 (963)
T Consensus       240 ~~~~~~~~~~~~~~~  254 (256)
T COG2200         240 LPADALDALLSSSQS  254 (256)
T ss_pred             CCHHHHHHHHHHCCC
T ss_conf             986899999752015