HHsearch alignment for GI: 254780468 and conserved domain: COG2200
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms].
Probab=100.00 E-value=0 Score=466.79 Aligned_cols=250 Identities=32% Similarity=0.576 Sum_probs=237.4
Q ss_pred HHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999874364100355411468822144210000000035775530230357888977996799899999999999998
Q gi|254780468|r 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 (963)
Q Consensus 706 ~~~~~l~~al~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~~l~~~ 785 (963)
T Consensus 3 ~~~~~l~~al~~~~~~l~yQPiv~~~~~~~~g~EaL~R~~~~~~g~i~p~~Fi~~ae~~gli~~l~~~v~~~a~~~~~~~ 82 (256)
T COG2200 3 QLERDLRQALENGEFSLYYQPIVDLATGRIVGYEALLRWRHPDGGLISPGEFIPLAEETGLIVELGRWVLEEACRQLRTW 82 (256)
T ss_pred HHHHHHHHHHHHCCEEEEECCEEECCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 48999999998097669972468757797888999998746998867989999999884989999999999999999853
Q ss_pred HHHCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 87158998499997697794391489999999988199954699997133775099989999999998898999918877
Q gi|254780468|r 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 (963)
Q Consensus 786 ~~~~~~~~~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~ 865 (963)
T Consensus 83 ~~~~---~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~~l~~EitE~~~~~~~~~~~~~l~~Lr~~G~~ialDDFGt 159 (256)
T COG2200 83 PRAG---PLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPHRLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGT 159 (256)
T ss_pred CCCC---CEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 2138---8079998488882865699999999997399912079997487122498999999999997799899978999
Q ss_pred CHHHHHHHHHCCCCEEEEEHHHHCCCC--HHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 645488897279989997168853999--457999999999999779809997039989999899809989940520689
Q gi|254780468|r 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 (963)
Q Consensus 866 g~ssl~~L~~l~~d~iKiD~sfv~~~~--~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P 943 (963)
T Consensus 160 G~ssl~~L~~l~~d~iKID~~fv~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGVEt~~ql~~L~~~G~~~~QGy~f~~P 239 (256)
T COG2200 160 GYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGVETEEQLDLLRELGCDYLQGYLFSRP 239 (256)
T ss_pred CHHHHHHHHHCCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 71659999857997499969999863038311799999999999749989997069699999999779998854741788
Q ss_pred CCHHHHHHHHHHHCC
Q ss_conf 998999999985161
Q gi|254780468|r 944 LGFNSILKLLKERFP 958 (963)
Q Consensus 944 ~~~~~~~~~l~~~~~ 958 (963)
T Consensus 240 ~~~~~~~~~~~~~~~ 254 (256)
T COG2200 240 LPADALDALLSSSQS 254 (256)
T ss_pred CCHHHHHHHHHHCCC
T ss_conf 986899999752015