HHsearch alignment for GI: 254780468 and conserved domain: COG3887
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms].
Probab=98.86 E-value=2.6e-05 Score=60.07 Aligned_cols=442 Identities=16% Similarity=0.140 Sum_probs=230.6
Q ss_pred HHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 99998325938999987997899988899762899778338978988626976899999999999607897389999998
Q gi|254780468|r 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 (963)
Q Consensus 407 ~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r 486 (963)
T Consensus 77 ~~~al~nmPiGii~~~e~~~veW~Npf~~~if~~~~~~--~~----~-------~~~~~~il~~~~~~~-~~~~~~i~-- 140 (655)
T COG3887 77 LEEALTNMPIGIILFNETNKVEWVNPFASKIFNKNEIG--ES----L-------SELIPEILKQLARND-EKQYIKIN-- 140 (655)
T ss_pred HHHHHHHCCCEEEEECCCCCEEEECHHHHHHCCHHHHH--HH----H-------HHHHHHHHHHHHCCC-CCEEEEEC--
T ss_conf 99999848823999868895688668899746753555--66----7-------777599999873578-55389973--
Q ss_pred CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 69996899987226768799988999999985305773123216630677532406699999999999987553389848
Q gi|254780468|r 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 (963)
Q Consensus 487 ~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~ 566 (963)
T Consensus 141 ---------e~~y~~~~~~~~~li----Yf~DvT~~~~~~~--------------------------~~~----~~--k~ 175 (655)
T COG3887 141 ---------EKKYDVYFDSDKRLI----YFFDVTEEEAIEE--------------------------EYE----NS--KP 175 (655)
T ss_pred ---------CEEEEEEEECCCCEE----EEEECCHHHHHHH--------------------------HHH----CC--CC
T ss_conf ---------548999980688779----9995608999999--------------------------986----04--73
Q ss_pred EEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCE-EEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCEE
Q ss_conf 999997678579888427788999999999999983489976-9998064102025566998999998765554310115
Q gi|254780468|r 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 (963)
Q Consensus 567 ~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~~~~-laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~~~~~ 645 (963)
T Consensus 176 vl~~i~vDNyDe~t~~~~d~~rs~inS~V~s~l~~~a~~~~if~rr~s~drf~~~~~~~~----L~~l~~~kF~iLd~~R 251 (655)
T COG3887 176 VLGIISVDNYDEVTQGLSDSDRSQINSFVTSFLEEWATEYNIFLRRYSSDRFYAFTNYKI----LEKLEEDKFSILDEFR 251 (655)
T ss_pred EEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECHHH----HHHHHHHHHHHHHHHH
T ss_conf 689998425777753787331899999999999999997446533303770899964799----9999873648999999
Q ss_pred -EECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC----------CHHHHHHH-HHHHH
Q ss_conf -5254679999998776458988998999999999999998708974052011111----------06899999-99874
Q gi|254780468|r 646 -NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF----------RSDRVMIK-EDLCL 713 (963)
Q Consensus 646 -~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~Al~~Ak~~g~~~~~~~~~~~~----------~~~~~~~~-~~l~~ 713 (963)
T Consensus 252 E~s~~~~ipLTLSiGvg~g---~~~~~elg~vA~~~L~lAlgRGGDQVvIke~~~k~~fyGG~s~~~ekrTRvRaRvis~ 328 (655)
T COG3887 252 EESSQKNIPLTLSIGVGYG---ENNLIELGEVAQSNLDLALGRGGDQVVIKENNGKVRFYGGKSNPMEKRTRVRARVIST 328 (655)
T ss_pred HHHHCCCCCEEEEEEECCC---CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 8740347646999985367---6657789999987578874268866999737995556479864667767799999999
Q ss_pred HHHHCC-----H--HHHHCCCCCCCCCCCCEEEHHCCCCCCC-CCCCCCCHHHHHHHHCCCHHHHHHH--HHHHHHHHHH
Q ss_conf 364100-----3--5541146882214421000000003577-5530230357888977996799899--9999999999
Q gi|254780468|r 714 AVENSE-----L--YLVYHPIIRLMDEEIVGLEALIQWDHPK-WGNISSSEFMLIAEELCMIKAINLF--MLERIARDII 783 (963)
Q Consensus 714 al~~~~-----~--~l~~QPi~~~~~~~~~~~E~l~R~~~~~-~~~i~p~~fi~~ae~~gl~~~ld~~--vl~~a~~~l~ 783 (963)
T Consensus 329 al~d~i~e~d~VfImGHk~pDmDal-GsAig~~~~A~~~~~~a~~v~dp~~~~pdveRa--i~~i~~~~e~~~~fit~~~ 405 (655)
T COG3887 329 ALSDIIKESDNVFIMGHKFPDMDAL-GSAIGMQKFASMNNKEAFAVLDPEDMSPDVERA--INEIEKNSEGKTRFITPSD 405 (655)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHH-HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH--HHHHHHCCHHHHEECCHHH
T ss_conf 9999985227489981688875777-789999999973465627997722268469999--9999726205432355999
Q ss_pred HHHHHCCCCCEEEEEECCHHHH-CCCHHHHHHHHHH--HHCCCC---HHHEEEEEEHHHHHCCHHH---HHH------HH
Q ss_conf 9887158998499997697794-3914899999999--881999---5469999713377509998---999------99
Q gi|254780468|r 784 SWRDQANMPPIFILINIASKDL-LDNELCEGMQALI--SKTLYS---PSRIKLSFSESVVMGNPER---SRL------LL 848 (963)
Q Consensus 784 ~~~~~~~~~~~~vsINlS~~~l-~~~~f~~~l~~~l--~~~~~~---~~~l~lEitE~~~~~~~~~---~~~------~~ 848 (963)
T Consensus 406 A~-~l~t~~sLLviVDt~k~s~vl~~~~~~~~~kvVViDHHRR~e~f~~n~~l~YiEsyASStsELVTEliqyq~~~~kl 484 (655)
T COG3887 406 AM-ELSTERSLLVIVDTHKPSLVLNEEFLDKFEKVVVIDHHRRDEDFISNPLLVYIESYASSTSELVTELIQYQPKKQKL 484 (655)
T ss_pred HH-HCCCCCCEEEEEECCCCCEECCHHHHHHHCEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHCCC
T ss_conf 86-32687708999936882000389999763028997344355443234277631367651889999999717431132
Q ss_pred HHHH----HCCCEEEEECCC-----CCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEC
Q ss_conf 9999----889899991887-----76454888972799899971688539994579999999999997798-0999703
Q gi|254780468|r 849 GRLR----KIGISLTLDDFG-----TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET-TIIAKDI 918 (963)
Q Consensus 849 ~~l~----~~G~~ialDdFG-----~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi-~viAegV 918 (963)
T Consensus 485 ~~ieAt~LlAGI~vDTKnFt~rTgsRTFdAAsyLRs~GaDtiliq~~lk~d~e~--y~k~~elI~~~~~~~~giaiA~~~ 562 (655)
T COG3887 485 SPIEATALLAGIIVDTKNFTLRTGSRTFDAASYLRSRGADTILIQKFLKTDFEE--YIKRSELIENARVYKDGIAIATGS 562 (655)
T ss_pred CHHHHHHHHHCEEEECCCCEEECCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 578999987325882365234036511158999986387679999998761999--999999998777106976999533
Q ss_pred CCHH
Q ss_conf 9989
Q gi|254780468|r 919 YGEI 922 (963)
Q Consensus 919 E~~~ 922 (963)
T Consensus 563 ~~e~ 566 (655)
T COG3887 563 KDEA 566 (655)
T ss_pred HHHH
T ss_conf 5543