HHsearch alignment for GI: 254780468 and conserved domain: COG3887

>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms].
Probab=98.86  E-value=2.6e-05  Score=60.07  Aligned_cols=442  Identities=16%  Similarity=0.140  Sum_probs=230.6

Q ss_pred             HHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf             99998325938999987997899988899762899778338978988626976899999999999607897389999998
Q gi|254780468|r  407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR  486 (963)
Q Consensus       407 ~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r  486 (963)
T Consensus        77 ~~~al~nmPiGii~~~e~~~veW~Npf~~~if~~~~~~--~~----~-------~~~~~~il~~~~~~~-~~~~~~i~--  140 (655)
T COG3887          77 LEEALTNMPIGIILFNETNKVEWVNPFASKIFNKNEIG--ES----L-------SELIPEILKQLARND-EKQYIKIN--  140 (655)
T ss_pred             HHHHHHHCCCEEEEECCCCCEEEECHHHHHHCCHHHHH--HH----H-------HHHHHHHHHHHHCCC-CCEEEEEC--
T ss_conf             99999848823999868895688668899746753555--66----7-------777599999873578-55389973--


Q ss_pred             CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             69996899987226768799988999999985305773123216630677532406699999999999987553389848
Q gi|254780468|r  487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP  566 (963)
Q Consensus       487 ~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~  566 (963)
T Consensus       141 ---------e~~y~~~~~~~~~li----Yf~DvT~~~~~~~--------------------------~~~----~~--k~  175 (655)
T COG3887         141 ---------EKKYDVYFDSDKRLI----YFFDVTEEEAIEE--------------------------EYE----NS--KP  175 (655)
T ss_pred             ---------CEEEEEEEECCCCEE----EEEECCHHHHHHH--------------------------HHH----CC--CC
T ss_conf             ---------548999980688779----9995608999999--------------------------986----04--73


Q ss_pred             EEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCE-EEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCEE
Q ss_conf             999997678579888427788999999999999983489976-9998064102025566998999998765554310115
Q gi|254780468|r  567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI  645 (963)
Q Consensus       567 ~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~~~~-laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~~~~~  645 (963)
T Consensus       176 vl~~i~vDNyDe~t~~~~d~~rs~inS~V~s~l~~~a~~~~if~rr~s~drf~~~~~~~~----L~~l~~~kF~iLd~~R  251 (655)
T COG3887         176 VLGIISVDNYDEVTQGLSDSDRSQINSFVTSFLEEWATEYNIFLRRYSSDRFYAFTNYKI----LEKLEEDKFSILDEFR  251 (655)
T ss_pred             EEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECHHH----HHHHHHHHHHHHHHHH
T ss_conf             689998425777753787331899999999999999997446533303770899964799----9999873648999999


Q ss_pred             -EECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC----------CHHHHHHH-HHHHH
Q ss_conf             -5254679999998776458988998999999999999998708974052011111----------06899999-99874
Q gi|254780468|r  646 -NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF----------RSDRVMIK-EDLCL  713 (963)
Q Consensus       646 -~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~Al~~Ak~~g~~~~~~~~~~~~----------~~~~~~~~-~~l~~  713 (963)
T Consensus       252 E~s~~~~ipLTLSiGvg~g---~~~~~elg~vA~~~L~lAlgRGGDQVvIke~~~k~~fyGG~s~~~ekrTRvRaRvis~  328 (655)
T COG3887         252 EESSQKNIPLTLSIGVGYG---ENNLIELGEVAQSNLDLALGRGGDQVVIKENNGKVRFYGGKSNPMEKRTRVRARVIST  328 (655)
T ss_pred             HHHHCCCCCEEEEEEECCC---CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             8740347646999985367---6657789999987578874268866999737995556479864667767799999999


Q ss_pred             HHHHCC-----H--HHHHCCCCCCCCCCCCEEEHHCCCCCCC-CCCCCCCHHHHHHHHCCCHHHHHHH--HHHHHHHHHH
Q ss_conf             364100-----3--5541146882214421000000003577-5530230357888977996799899--9999999999
Q gi|254780468|r  714 AVENSE-----L--YLVYHPIIRLMDEEIVGLEALIQWDHPK-WGNISSSEFMLIAEELCMIKAINLF--MLERIARDII  783 (963)
Q Consensus       714 al~~~~-----~--~l~~QPi~~~~~~~~~~~E~l~R~~~~~-~~~i~p~~fi~~ae~~gl~~~ld~~--vl~~a~~~l~  783 (963)
T Consensus       329 al~d~i~e~d~VfImGHk~pDmDal-GsAig~~~~A~~~~~~a~~v~dp~~~~pdveRa--i~~i~~~~e~~~~fit~~~  405 (655)
T COG3887         329 ALSDIIKESDNVFIMGHKFPDMDAL-GSAIGMQKFASMNNKEAFAVLDPEDMSPDVERA--INEIEKNSEGKTRFITPSD  405 (655)
T ss_pred             HHHHHHHHCCCEEEECCCCCCHHHH-HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH--HHHHHHCCHHHHEECCHHH
T ss_conf             9999985227489981688875777-789999999973465627997722268469999--9999726205432355999


Q ss_pred             HHHHHCCCCCEEEEEECCHHHH-CCCHHHHHHHHHH--HHCCCC---HHHEEEEEEHHHHHCCHHH---HHH------HH
Q ss_conf             9887158998499997697794-3914899999999--881999---5469999713377509998---999------99
Q gi|254780468|r  784 SWRDQANMPPIFILINIASKDL-LDNELCEGMQALI--SKTLYS---PSRIKLSFSESVVMGNPER---SRL------LL  848 (963)
Q Consensus       784 ~~~~~~~~~~~~vsINlS~~~l-~~~~f~~~l~~~l--~~~~~~---~~~l~lEitE~~~~~~~~~---~~~------~~  848 (963)
T Consensus       406 A~-~l~t~~sLLviVDt~k~s~vl~~~~~~~~~kvVViDHHRR~e~f~~n~~l~YiEsyASStsELVTEliqyq~~~~kl  484 (655)
T COG3887         406 AM-ELSTERSLLVIVDTHKPSLVLNEEFLDKFEKVVVIDHHRRDEDFISNPLLVYIESYASSTSELVTELIQYQPKKQKL  484 (655)
T ss_pred             HH-HCCCCCCEEEEEECCCCCEECCHHHHHHHCEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHCCC
T ss_conf             86-32687708999936882000389999763028997344355443234277631367651889999999717431132


Q ss_pred             HHHH----HCCCEEEEECCC-----CCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEC
Q ss_conf             9999----889899991887-----76454888972799899971688539994579999999999997798-0999703
Q gi|254780468|r  849 GRLR----KIGISLTLDDFG-----TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET-TIIAKDI  918 (963)
Q Consensus       849 ~~l~----~~G~~ialDdFG-----~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi-~viAegV  918 (963)
T Consensus       485 ~~ieAt~LlAGI~vDTKnFt~rTgsRTFdAAsyLRs~GaDtiliq~~lk~d~e~--y~k~~elI~~~~~~~~giaiA~~~  562 (655)
T COG3887         485 SPIEATALLAGIIVDTKNFTLRTGSRTFDAASYLRSRGADTILIQKFLKTDFEE--YIKRSELIENARVYKDGIAIATGS  562 (655)
T ss_pred             CHHHHHHHHHCEEEECCCCEEECCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             578999987325882365234036511158999986387679999998761999--999999998777106976999533


Q ss_pred             CCHH
Q ss_conf             9989
Q gi|254780468|r  919 YGEI  922 (963)
Q Consensus       919 E~~~  922 (963)
T Consensus       563 ~~e~  566 (655)
T COG3887         563 KDEA  566 (655)
T ss_pred             HHHH
T ss_conf             5543