HHsearch alignment for GI: 254780468 and conserved domain: COG5002

>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=97.91  E-value=0.002  Score=44.92  Aligned_cols=126  Identities=15%  Similarity=0.115  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCC
Q ss_conf             88999748889999983259389999879978999888997628997783389789886269768999999999996078
Q gi|254780468|r  396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR  475 (963)
Q Consensus       396 ~~~~l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~  475 (963)
T Consensus       102 aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L~~~~E~~~~~~i--~elL~i~d~y----~~~dL~e~-  174 (459)
T COG5002         102 AQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRSI--LELLKIEDTY----TFEDLVEK-  174 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHHCCCHHHHHCCCH--HHHHCCCCCE----EHHHHHHC-
T ss_conf             9876788888899899987076576457786899350799984867787716537--8885775430----28888725-


Q ss_pred             CCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHH
Q ss_conf             97389999998699968999872267687999889999999853057731232166
Q gi|254780468|r  476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC  531 (963)
Q Consensus       476 ~~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~  531 (963)
T Consensus       175 ~~s~lld~~--~-~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~ErRe  227 (459)
T COG5002         175 NDSLLLDSS--D-EEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERERRE  227 (459)
T ss_pred             CCCEEEEEC--C-CCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf             982898604--7-8863799998888851146644069987314387888999999