HHsearch alignment for GI: 254780468 and conserved domain: COG5002
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=97.91 E-value=0.002 Score=44.92 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCC
Q ss_conf 88999748889999983259389999879978999888997628997783389789886269768999999999996078
Q gi|254780468|r 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 (963)
Q Consensus 396 ~~~~l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~ 475 (963)
T Consensus 102 aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L~~~~E~~~~~~i--~elL~i~d~y----~~~dL~e~- 174 (459)
T COG5002 102 AQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRSI--LELLKIEDTY----TFEDLVEK- 174 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHHCCCHHHHHCCCH--HHHHCCCCCE----EHHHHHHC-
T ss_conf 9876788888899899987076576457786899350799984867787716537--8885775430----28888725-
Q ss_pred CCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHH
Q ss_conf 97389999998699968999872267687999889999999853057731232166
Q gi|254780468|r 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 (963)
Q Consensus 476 ~~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~ 531 (963)
T Consensus 175 ~~s~lld~~--~-~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~ErRe 227 (459)
T COG5002 175 NDSLLLDSS--D-EEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERERRE 227 (459)
T ss_pred CCCEEEEEC--C-CCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 982898604--7-8863799998888851146644069987314387888999999