HHsearch alignment for GI: 254780468 and conserved domain: PRK09959
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional.
Probab=98.72 E-value=2.9e-05 Score=59.71 Aligned_cols=496 Identities=9% Similarity=0.057 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 85378889997488899999832593899998799789998889976289977833897898862697689999999999
Q gi|254780468|r 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 (963)
Q Consensus 391 ~~~~~~~~~l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~ 470 (963)
T Consensus 562 r~R~~ae~~L~~ql~f~~~L~d~iP~pi~v~d~~g~~i~~N~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1197)
T PRK09959 562 RRRKVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTHEVTAE 641 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999889999999836998769982556122411888987523144421356532222156777777899875
Q ss_pred HHCCCCCEEEEEEEEECCCC-CEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 96078973899999986999-68999872267687999889999999853057731232166306775324066999999
Q gi|254780468|r 471 FVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 (963)
Q Consensus 471 ~~~~~~~~~~~e~r~r~~dG-~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~D~lTGL~NR~~f~~ 549 (963)
T Consensus 642 ~~~~~-~~~~~~~~~--~~g~~~~~i~~w~~~~~~~~~~~~~~i~gw~DITerk~~e~~L~~Ak-~~Ae~An~AKS~FLA 717 (1197)
T PRK09959 642 TKENR-TIYTQVFEI--DNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVER-NKAINATVAKSQFLA 717 (1197)
T ss_pred HHHCC-CCCCEEEEC--CCCCCCEEEEEEEEEECCCCCCCEEEECCEEEHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 31012-100014530--57754236775310003764444010115464128999999999999-999999888888887
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH--HCCHH---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCC
Q ss_conf 99999987553389848999997678579888--42778---89999999999999834899769998064102025566
Q gi|254780468|r 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKIND--VLGIA---VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 (963)
Q Consensus 550 ~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~--~~G~~---~gD~lL~~ia~~L~~~~~~~~~laR~~gdeFaill~~~ 624 (963)
T Consensus 718 ~MSHEIR----T---PLn~-Ii---G~~eLL~~~~l~~~q~~~~l~~~~~Sa~~LL~LInDILD~SKIEaG~l~l~~~~~ 786 (1197)
T PRK09959 718 TMSHEIR----T---PISS-IM---GFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWV 786 (1197)
T ss_pred HCCHHHC----C---HHHH-HH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 4735316----5---6899-99---9999984689998999999999999999999988888999898538862145201
Q ss_pred CCHHHHHHHHHHHHHHHHCEEEECCEEEEEEEEEEEEE---CCCCCCCHHHHHHH-HHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 99899999876555431011552546799999987764---58988998999999-999999998708974052011111
Q gi|254780468|r 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS---WTSSKITSSEMLKN-AELAMYHAKHRGGNHVESFRVSSF 700 (963)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~siGi~~---~~~~~~~~~~ll~~-Ad~Al~~Ak~~g~~~~~~~~~~~~ 700 (963)
T Consensus 787 ~l~~li~~v~----~~~~~~A~~K~--l~l~~~~~~p~~~~v~~D~~Rl~QIL~NLlsNAIKFT-~~G~V~i~~~~~~~- 858 (1197)
T PRK09959 787 DIPTLVQNTC----HSFGAIAASKS--IALSCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFT-TEGAVKITTSLGHI- 858 (1197)
T ss_pred CHHHHHHHHH----HHHHHHHHHCC--CEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEEEEC-
T ss_conf 7999999999----99999999679--6899955898751352678899999999987537468-79789999998651-
Q ss_pred CHHHHHHH---HHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 06899999---998743641003554114688221442100000000357755302303578889779967998999999
Q gi|254780468|r 701 RSDRVMIK---EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 (963)
Q Consensus 701 ~~~~~~~~---~~l~~al~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~fi~~ae~~gl~~~ld~~vl~~ 777 (963)
T Consensus 859 ~~~~~~l~~~V~DTGiGI~~~~~~~iF~pF~Q~s~~---------r------------~----~~GTG----LGLaI~k~ 909 (1197)
T PRK09959 859 DDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAG---------R------------Q----QTGSG----LGLMICKE 909 (1197)
T ss_pred CCCEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC---------C------------C----CCCCC----CHHHHHHH
T ss_conf 798069999999778788988997536786247788---------7------------8----89848----35999999
Q ss_pred HHHHHHHH--HHHCC--CCCEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHH
Q ss_conf 99999998--87158--998499997697794391489999999988199954699997133775099989999999998
Q gi|254780468|r 778 IARDIISW--RDQAN--MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 (963)
Q Consensus 778 a~~~l~~~--~~~~~--~~~~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~ 853 (963)
T Consensus 910 LvelMgG~I~v~S~~G~GS~F~~~lpl~~~~--~~---~~~~~~~~~p~~~~~~l~ILvVe----Dn~~Nr~ll~~~L~~ 980 (1197)
T PRK09959 910 LIKNMQGDLSLESHPGIGTTFTITIPVEISQ--QV---ATVEAKAEQPITLPEKLSILIAD----DHPTNRLLLKRQLNL 980 (1197)
T ss_pred HHHHCCCEEEEEECCCCCEEEEEEEECCCCC--CC---CCCCCCCCCCCCCCCCCEEEEEC----CCHHHHHHHHHHHHH
T ss_conf 9998799289993599944999999756455--55---56666555777677898799979----989999999999998
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-CHHHHHHHHHCCC
Q ss_conf 898999918877645488897279989997168853999457999999999999779809997039-9899998998099
Q gi|254780468|r 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIY-GEIDIKELTRMGC 932 (963)
Q Consensus 854 ~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE-~~~~~~~l~~~G~ 932 (963)
T Consensus 981 lG~~v~~--a~nG~eAl~~~~~~~fDlILmDi~M-P~MDG--~e~tr~IR~--~~~~~PIialTA~a~~~~~~~cl~aGM 1053 (1197)
T PRK09959 981 LGYDVDE--ATDGVQALHKVSMQHYDLLITDVNM-PNMDG--FELTRKLRE--QNSSLPIWGLTANAQANEREKGLNCGM 1053 (1197)
T ss_pred CCCEEEE--ECCHHHHHHHHHCCCCCEEEECCCC-CCCCH--HHHHHHHHC--CCCCCCEEEEECCCCHHHHHHHHHCCC
T ss_conf 3999999--8999999999766999999987978-99989--999999964--698694899979999999999997699
Q ss_pred CEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 89940520689998999999985161
Q gi|254780468|r 933 DYIQDSHVASPLGFNSILKLLKERFP 958 (963)
Q Consensus 933 d~~QG~~~~~P~~~~~~~~~l~~~~~ 958 (963)
T Consensus 1054 dd----~L~KPi~l~~L~~~L~~~~~ 1075 (1197)
T PRK09959 1054 NL----CLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CE----EEECCCCHHHHHHHHHHHHC
T ss_conf 83----45188989999999985311