HHsearch alignment for GI: 254780468 and conserved domain: PRK11059
>PRK11059 regulatory protein CsrD; Provisional.
Probab=100.00 E-value=0 Score=731.89 Aligned_cols=413 Identities=21% Similarity=0.280 Sum_probs=366.6
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 321663067753240669999999999998755338984899999767857988842778899999999999998348--
Q gi|254780468|r 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-- 604 (963)
Q Consensus 527 ~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~-- 604 (963)
T Consensus 222 ~~IR~~Af~D~lTGL~NR~~F~~rL~s~L~~~~~~-~~~GaVllIdld~fk~iNd~~G~~~gD~lL~~va~~L~~~l~r~ 300 (642)
T PRK11059 222 TFIRSNAFLDAKTGLGNRLFFDNQLDTLLEDQEKV-GAHGVVMLIRLPDFDLLQEELGESQVDELLFELINLLSTFVQRY 300 (642)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHC-CCCEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99988775072238505899999999998374541-87559999987267699881095989999999999999997538
Q ss_pred CCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99769998064102025566998999998765554310115525467999999877645898899899999999999999
Q gi|254780468|r 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 (963)
Q Consensus 605 ~~~~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~Al~~A 684 (963)
T Consensus 301 ~d~ilARl~gdEFaILlP~~s~-~ea~~lA~qLlk~l~~l~~~~~~d~~~~~hIGia~y~-~G~~~~~Ll~~AD~Al~~A 378 (642)
T PRK11059 301 PGALLARYSRSDFAVLLPHRSL-KEADSLASQLLKAVDSLPPPKMLDRDDFLHIGIAAYR-SGQSTEQVMEEAEMALRSA 378 (642)
T ss_pred CCCEEEEECCCEEEEEECCCCH-HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECC-CCCCHHHHHHHHHHHHHHH
T ss_conf 9877887158738999699985-9999999999999971368876777764899999688-9998999999999999999
Q ss_pred HHHCCCCEEECCCCCCC---HHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87089740520111110---689999999874364100355411468822144210000000035775530230357888
Q gi|254780468|r 685 KHRGGNHVESFRVSSFR---SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 (963)
Q Consensus 685 k~~g~~~~~~~~~~~~~---~~~~~~~~~l~~al~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~fi~~a 761 (963)
T Consensus 379 k~qg~n~w~~yd~~~~~e~~rGsvrWR~lLe~AL~~~~~~L~~QPvv~-~dg~v~h~E~L~Ri~d~~g~~i~p~~FIP~A 457 (642)
T PRK11059 379 QLQGGNSWFMYDKAQDPEKGRGSVRWRTLLEQALVRGGPRLYQQPVVT-RDGQVHHRELMCRIRDGQGNEVRAAEFMPMV 457 (642)
T ss_pred HHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEC-CCCCEEEEEEEEEEECCCCCEECHHHHHHHH
T ss_conf 972899837730212356664158999999999975985899754476-8898865554564776899888789989999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHCC-CCHHHEEEEEEHHHHHCC
Q ss_conf 9779967998999999999999988715899849999769779439148999999998819-995469999713377509
Q gi|254780468|r 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGN 840 (963)
Q Consensus 762 e~~gl~~~ld~~vl~~a~~~l~~~~~~~~~~~~~vsINlS~~~l~~~~f~~~l~~~l~~~~-~~~~~l~lEitE~~~~~~ 840 (963)
T Consensus 458 E~~GLi~~iDr~Vl~~al~~l~~~~~~~----~~laINLS~~sl~~~~F~~wl~~~Llq~~~~~~~rL~fEItE~~~~~~ 533 (642)
T PRK11059 458 LQCGLSEQYDRQVIERVLPLLSYWPEES----QNLSINLSVDSLLSRAFQRWLRDTLLQCERSQRKRLIFELAEADVVQH 533 (642)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCCCC----CEEEEEECHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHC
T ss_conf 9849887888999999999998471017----718999587783786799999999986588886628999637877648
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCC--HHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 9989999999998898999918877645488897279989997168853999--45799999999999977980999703
Q gi|254780468|r 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDI 918 (963)
Q Consensus 841 ~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~--~~~~~~v~sii~~a~~lgi~viAegV 918 (963)
T Consensus 534 ~~~~~~~l~~L~~lG~~~aiDdFG~g~sSl~YLk~lpvd~LKID~SfVr~I~~~~enq~~V~sIi~~a~~l~~~VIAEGV 613 (642)
T PRK11059 534 IDRLRPVLRMLRGLGCRLAVDQAGLTVVSTSYIKELNVELIKLHPSLVRNIHQRTENQLFVRSLVGACAGTETQVFAEGV 613 (642)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999999976987999899997666899963999999988888637126931079999999999867997999623
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCCCCCHH
Q ss_conf 99899998998099899405206899989
Q gi|254780468|r 919 YGEIDIKELTRMGCDYIQDSHVASPLGFN 947 (963)
Q Consensus 919 E~~~~~~~l~~~G~d~~QG~~~~~P~~~~ 947 (963)
T Consensus 614 Et~~q~~~L~~lGvd~~QGy~f~~P~Pl~ 642 (642)
T PRK11059 614 ESREEWQTLQILGVSGGQGDFFASPQPLD 642 (642)
T ss_pred CCHHHHHHHHHCCCCEEECCEECCCCCCC
T ss_conf 86999999998099832247317888998