HHsearch alignment for GI: 254780468 and conserved domain: PRK11073
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional.
Probab=98.29 E-value=3.4e-05 Score=59.16 Aligned_cols=115 Identities=10% Similarity=0.074 Sum_probs=79.0
Q ss_pred HHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 99998325938999987997899988899762899778338978988626976899999999999607897389999998
Q gi|254780468|r 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 (963)
Q Consensus 407 ~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r 486 (963)
T Consensus 9 ~~~Il~~~~d~Iiv~D~~g~I~~~N~aa~~l~g~~~~~~~G~~~--~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 84 (348)
T PRK11073 9 AGQILNSLINSILLLDDNLAIHYANPAAQQLLAQSSRKLFGTPL--PELLSYFSLN-I-ELMQESLQAGQGFTDNEVTLV 84 (348)
T ss_pred HHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCH--HHHHCCCCCC-H-HHHHHHHHCCCCCCCCEEEEE
T ss_conf 99999866079649989797012839999997859899859968--9984665301-8-999999973897413239999
Q ss_pred CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHH
Q ss_conf 699968999872267687999889999999853057731232166
Q gi|254780468|r 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 (963)
Q Consensus 487 ~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~ 531 (963)
T Consensus 85 -~~~~~~~~~~~~~~~~~--~---~~l~~~~di~~~k~l~~e~~~ 123 (348)
T PRK11073 85 -IDGRSHILSLTAQRLPE--G---MILLEMAPMDNQRRLSQEQLQ 123 (348)
T ss_pred -ECCEEEEEEEEEEECCC--C---EEEEEEEECHHHHHHHHHHHH
T ss_conf -89969999999998258--6---899999962799999999999