HHsearch alignment for GI: 254780468 and conserved domain: PRK11091
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional.
Probab=99.67 E-value=1.3e-11 Score=110.76 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCC
Q ss_conf 88899974888999998325938999987997899988899762899778338978988626976899999999999607
Q gi|254780468|r 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 (963)
Q Consensus 395 ~~~~~l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~ 474 (963)
T Consensus 145 ~~q~~l~~~~~llRs~~D~~Pdli~~rd~~g~f~gCNrafe~~~G~~e~eliG~t~~--d~~~~e~a~~~~~~D~~v~~~ 222 (779)
T PRK11091 145 ETQIELEQQSSLLRSFLDASPDLVYYRNEDGEFSGCNRAMELLTGKSEKQLVGLTPK--DVYSPEAAEKVIETDEKVFRH 222 (779)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCHHHHCCCCHH--HHCCHHHHHHHHHHHHHHHHC
T ss_conf 999999998899998850287515787798765341099998809998998499835--527998899999738999864
Q ss_pred CCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHH
Q ss_conf 897389999998699968999872267687999889999999853057731232166
Q gi|254780468|r 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 (963)
Q Consensus 475 ~~~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~ 531 (963)
T Consensus 223 -~~~~~~e~w~~~~dG~~~~~e~~k~P~~d~~g~~~G~~g~~rDITerk~aeeaLE~ 278 (779)
T PRK11091 223 -NVSLTYEQWLDYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEK 278 (779)
T ss_pred -CCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHH
T ss_conf -79821113466489866789986401353899788786300160177899999999