HHsearch alignment for GI: 254780468 and conserved domain: TIGR02577
>TIGR02577 cas_TM1794_Crm2 CRISPR-associated protein, Crm2 family; InterPro: IPR013407 This entry is encoded within the CRISPR-associated RAMP module, a set of six genes found together in prokaryotic genomes . This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six genes (but not those encoding this entry) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This entry, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2..
Probab=92.79 E-value=0.66 Score=24.60 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=51.8
Q ss_pred CEEEEEECCCEEECCCCCC-CHHHHHHHHHHHHHHHHCEEEECCE---------------------EEEEEEEEEEEECC
Q ss_conf 7699980641020255669-9899999876555431011552546---------------------79999998776458
Q gi|254780468|r 607 DILARLSGNRFGIILISEN-NSLKIADFAIAMRKSIAMPINLLER---------------------EITVTASIGFASWT 664 (963)
Q Consensus 607 ~~laR~~gdeFaill~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~i~~t~siGi~~~~ 664 (963)
T Consensus 565 G~lvY~GGDDVLA~lP~~~naL~~A~~l~~~F~~~~~~~~~~~~~~~~e~E~~~~Y~~~KPs~~~~~~~~~~SaGl~I~H 644 (665)
T TIGR02577 565 GVLVYAGGDDVLALLPVDTNALDVAKELRKEFSESLEKELGKERIKPYESEKVVRYQGEKPSEYTSLEEPTLSAGLVIVH 644 (665)
T ss_pred CEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 37898735513455251256899999999999998753024567774577563442688887643356776526777111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9889989999999999999987
Q gi|254780468|r 665 SSKITSSEMLKNAELAMYHAKH 686 (963)
Q Consensus 665 ~~~~~~~~ll~~Ad~Al~~Ak~ 686 (963)
T Consensus 645 -~k~PL~~ale~a~~llk~AK~ 665 (665)
T TIGR02577 645 -HKEPLYDALELARELLKRAKE 665 (665)
T ss_pred -ECCCHHHHHHHHHHHHHHHCC
T ss_conf -105589999999999997359