HHsearch alignment for GI: 254780468 and conserved domain: TIGR02938
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=98.79 E-value=2.7e-09 Score=92.26 Aligned_cols=135 Identities=14% Similarity=0.194 Sum_probs=113.0
Q ss_pred HHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHH-HHCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 8999998325938999987997899988899762899778338978988-626976899999999999607897389999
Q gi|254780468|r 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 (963)
Q Consensus 405 er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~-~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~ 483 (963)
T Consensus 4 e~~RqtVdqAp~AISITDlKANILyaN~AF~~iTGY~~eE~iGkNES~LSn~tTP--peVYQaLWg~la~q--kPW~G~L 79 (496)
T TIGR02938 4 ELYRQTVDQAPVAISITDLKANILYANDAFSEITGYAKEEVIGKNESVLSNRTTP--PEVYQALWGSLAEQ--KPWAGKL 79 (496)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHC--CCCCCCE
T ss_conf 5688866228803643101456999956632155865621112554012685887--17999999886305--8986510
Q ss_pred EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 998699968999872267687999889999999853057731232166306775324066999999999999
Q gi|254780468|r 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 (963)
Q Consensus 484 r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l 555 (963)
T Consensus 80 lNRrkDg~lYLAeLtvaPvlneaGeT~hflGMHRd~tElh~Leq~V------------~nQ~l~iE~VV~aa 139 (496)
T TIGR02938 80 LNRRKDGELYLAELTVAPVLNEAGETTHFLGMHRDVTELHRLEQRV------------ANQKLLIEAVVDAA 139 (496)
T ss_pred ECCCCCCCHHHHHHCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_conf 0001165300222020200014688158732545435788998889------------76467899998786