HHsearch alignment for GI: 254780468 and conserved domain: TIGR02938
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=97.10 E-value=0.0088 Score=39.74 Aligned_cols=173 Identities=13% Similarity=0.134 Sum_probs=110.5
Q ss_pred HHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 99998325938999987997899988899762899778338978988626976899999999999607897389999998
Q gi|254780468|r 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 (963)
Q Consensus 407 ~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r 486 (963)
T Consensus 132 iE~VV~aaPva~vllD~~gRv~LdN~~yk~La~D--L~v~epa~~~l~lLre~----~~e~~~~~~~q~~afsn~E~rfD 205 (496)
T TIGR02938 132 IEAVVDAAPVAAVLLDEQGRVVLDNLEYKKLASD--LKVEEPAELLLKLLREE----LAEDLEELENQEKAFSNKELRFD 205 (496)
T ss_pred HHHHHHHHHHHHHEECCCCCEEECCHHHHHHHHH--CCCCCCHHHHHHHHHHH----HHHHHHHHCCCCCEECCCEEEEE
T ss_conf 9999878654100056998688167768878742--14144179999985087----65278652021101015403541
Q ss_pred CCCCC-EEEEEEEEEEEECCCCCEEEE---------EEEEEECHHHHHHHHHHHHHCCCCCCCCHHHH----HHHHHHHH
Q ss_conf 69996-899987226768799988999---------99998530577312321663067753240669----99999999
Q gi|254780468|r 487 AADNQ-FHWMIIRIRPMSNSNGDILRY---------IGIANDITEQKKSLEGILCNAFQDNLTGIPNR----QSFLDRLT 552 (963)
Q Consensus 487 ~~dG~-~~w~~~~~~~i~~~~g~~~~~---------~g~~~DIt~~~~~~~~l~~~a~~D~lTGL~NR----~~f~~~l~ 552 (963)
T Consensus 206 ~ggGR~~RWlSc~g~~i~~e~~~ad~fF~~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLq----AlmAEEE~le~~rEtl~ 281 (496)
T TIGR02938 206 RGGGRSARWLSCAGRVIRIEEDSADSFFAAAEKRYLLLTIDDISELRKKQERARLSALQ----ALMAEEEKLEALRETLS 281 (496)
T ss_pred CCCCCCCCCEEECCCEEEEECCCCCEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_conf 68878850102023235311364011561689983056636478889999999999989----99989988888766688
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99987553389848999997678579888427788999999999
Q gi|254780468|r 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 (963)
Q Consensus 553 ~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia 596 (963)
T Consensus 282 AAIhrl~---g-P~Nlisa---A~~~L~RRlGD~AGn~a~~~~l 318 (496)
T TIGR02938 282 AAIHRLQ---G-PLNLISA---AISVLERRLGDDAGNDAVAALL 318 (496)
T ss_pred HHHHHHC---C-CHHHHHH---HHHHHHHCCCCCCCCHHHHHHH
T ss_conf 8888852---8-7107889---9998632058323797999999