HHsearch alignment for GI: 254780468 and conserved domain: cd01949
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Probab=99.94 E-value=1.7e-25 Score=222.78 Aligned_cols=157 Identities=37% Similarity=0.614 Sum_probs=145.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 67753240669999999999998755338984899999767857988842778899999999999998348997699980
Q gi|254780468|r 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 (963)
Q Consensus 534 ~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~~~~laR~~ 613 (963)
T Consensus 1 ~~D~lTgL~Nr~~~~~~l~~~i~~~~~~~-~~~~l~~i~id~f~~in~~~G~~~gD~~l~~~a~~l~~~~~~~~~~~R~~ 79 (158)
T cd01949 1 YTDPLTGLPNRRAFEERLERLLARARRSG-RPLALLLIDIDHFKQINDTYGHAAGDEVLKEVAERLRSSLRESDLVARLG 79 (158)
T ss_pred CCCHHCCCHHHHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 99810170149999999999999998619-96899997288667888723964677999975446422478998899943
Q ss_pred CCCEEECCCCCCCHHHHHHHHHHHHHHHHCEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 6410202556699899999876555431011552546799999987764589889989999999999999987089740
Q gi|254780468|r 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 (963)
Q Consensus 614 gdeFaill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~Al~~Ak~~g~~~~ 692 (963)
T Consensus 80 ~d~F~vl~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siGia~~~~~~~~~~~ll~~A~~Al~~Ak~~G~~~~ 157 (158)
T cd01949 80 GDEFAILLPGT-DLEEAEALAERLREAIEEPFFIDGQEIRVTASIGIATYPEDGEDAEELLRRADEALYRAKRSGRNRV 157 (158)
T ss_pred CCEEEEEECCC-CHHHHHHHHHHHHHHHHCHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 98999996899-9999999999999998173003787655427999998079999899999999999999998883969