HHsearch alignment for GI: 254780468 and conserved domain: pfam00989
>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.42 E-value=3.1e-12 Score=115.90 Aligned_cols=112 Identities=18% Similarity=0.243 Sum_probs=102.1
Q ss_pred HHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 89999983259389999879978999888997628997783389789886269768999999999996078973899999
Q gi|254780468|r 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 (963)
Q Consensus 405 er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r 484 (963)
T Consensus 1 er~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 78 (112)
T pfam00989 1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGK--SLLDLIPEEDDAEVAELLRQALLQGEESRGGEVS 78 (112)
T ss_pred CHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 97999998342461999899999999165332258636674375--2012457534399999999999819976887765
Q ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 98699968999872267687999889999999853
Q gi|254780468|r 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 (963)
Q Consensus 485 ~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DI 519 (963)
T Consensus 79 ~~~~dG~~~~~~~~~~pi~d~~g~-~g~v~i~rDI 112 (112)
T pfam00989 79 FRVPDGRPRHVEVRASPVRDAGGE-IGFLGVLRDI 112 (112)
T ss_pred EECCCCCEEEEEEEEEEEECCCCC-EEEEEEEECC
T ss_conf 287999899999999999919999-9999999849