HHsearch alignment for GI: 254780468 and conserved domain: pfam07310

>pfam07310 PAS_5 PAS domain. This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long. This region is is distantly similar to other PAS domains.

Probab=91.85  E-value=0.87  Score=23.64  Aligned_cols=94  Identities=11%  Similarity=0.154  Sum_probs=72.5

Q ss_pred             EEEEEECCCCE--EEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEE
Q ss_conf             89999879978--9998889976289977833897898862697689999999999960789738999999869996899
Q gi|254780468|r  417 IVWDWDIVRDR--VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW  494 (963)
Q Consensus       417 ~i~~~d~~~~~--~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~~w  494 (963)
T Consensus        41 file~~~~~~~r~RlaGt~l~~~~G~d~~-----G~~~~~l~~~~~r~~~~~~l~~v~~~~~p-~~~~~~~~~~~g~~~~  114 (137)
T pfam07310        41 FILERDAPGGAPFRLAGTRLCALFGRELR-----GIPFSALWTEASRREIARVLDVVFDRTLP-VLAGVDAEARNGRSLH  114 (137)
T ss_pred             EEEEEECCCCEEEEEECHHHHHHHCCCCC-----CCCHHHHHCHHHHHHHHHHHHHHHCCCCE-EEEEEEEECCCCCCEE
T ss_conf             89998479967999817889998299888-----97889961967799999999999758943-9999778638987015


Q ss_pred             EEEEEEEEECCCCCEEEEEEEE
Q ss_conf             9872267687999889999999
Q gi|254780468|r  495 MIIRIRPMSNSNGDILRYIGIA  516 (963)
Q Consensus       495 ~~~~~~~i~~~~g~~~~~~g~~  516 (963)
T Consensus       115 ~e~LlLPL~~d~g~vdriLG~l  136 (137)
T pfam07310       115 FELLLLPLATRSGTPDRFLGLL  136 (137)
T ss_pred             EEEEECCCCCCCCCHHHHHHCC
T ss_conf             4355525789999722333104