HHsearch alignment for GI: 254780468 and conserved domain: pfam08447
>pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.42 E-value=5.2e-12 Score=114.05 Aligned_cols=90 Identities=29% Similarity=0.593 Sum_probs=84.9
Q ss_pred EEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEEEEECCC
Q ss_conf 89998889976289977833897898862697689999999999960789738999999869996899987226768799
Q gi|254780468|r 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 (963)
Q Consensus 427 ~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~ 506 (963)
T Consensus 1 v~y~s~~~~~i~G~~~~e~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~dG~~~wi~~~~~~~~d~~ 80 (90)
T pfam08447 1 IIYWSPRFEEILGYTPEELKSSYEDWLDLVHPEDRERVRRALQEFSLKKGEPYSGEYRIRRKDGEYRWVEARGRPIRDEN 80 (90)
T ss_pred CEEECHHHHHHHCCCCHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEEEECCC
T ss_conf 99999899998499901107998899987190568899988788886058740468999815993999999999999999
Q ss_pred CCEEEEEEEE
Q ss_conf 9889999999
Q gi|254780468|r 507 GDILRYIGIA 516 (963)
Q Consensus 507 g~~~~~~g~~ 516 (963)
T Consensus 81 G~~~~~~Gi~ 90 (90)
T pfam08447 81 GKPVRVIGVA 90 (90)
T ss_pred CCEEEEEEEC
T ss_conf 9999999689