HHsearch alignment for GI: 254780468 and conserved domain: pfam08448

>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.

Probab=99.24  E-value=1.5e-10  Score=102.25  Aligned_cols=110  Identities=15%  Similarity=0.183  Sum_probs=97.4

Q ss_pred             HHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCC
Q ss_conf             83259389999879978999888997628997783389789886269768999999999996078973899999986999
Q gi|254780468|r  411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN  490 (963)
Q Consensus       411 l~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG  490 (963)
T Consensus         1 ~d~~p~~i~~~D~~g~i~~~N~a~~~~~g~~~~~~iG~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g   76 (110)
T pfam08448         1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGK--TLAELLPPEDAARLERALRRALEGEEPI--DFLEELLLNG   76 (110)
T ss_pred             CCCCCHHHEEECCCCCEEEEEHHHHHHCCCCHHHHCCC--CCHHCCCCHHHHHHHHHHHHHHCCCCEE--EEEEEECCCC
T ss_conf             99857353799499969999347466709898998095--1210068034566777899997389558--8664302588


Q ss_pred             CEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHH
Q ss_conf             6899987226768799988999999985305773
Q gi|254780468|r  491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK  524 (963)
Q Consensus       491 ~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~  524 (963)
T Consensus        77 ~~~~~~~~~~pi~d~~G~~~g~v~~~~DITerKq  110 (110)
T pfam08448        77 EERHYELRLTPLRDPDGEVIGVLVISRDITERRR  110 (110)
T ss_pred             CCEEEEEEEEEEECCCCCEEEEEEEEEECCHHCC
T ss_conf             5200043576689899999999999998833129