HHsearch alignment for GI: 254780468 and conserved domain: smart00052
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=100.00 E-value=0 Score=426.94 Aligned_cols=239 Identities=34% Similarity=0.616 Sum_probs=228.6
Q ss_pred HHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99987436410035541146882214421000000003577553023035788897799679989999999999999887
Q gi|254780468|r 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 (963)
Q Consensus 708 ~~~l~~al~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~~l~~~~~ 787 (963)
T Consensus 1 e~~l~~Al~~~~~~l~~QPiv~~~~~~i~~~Eal~R~~~~~~~~l~p~~f~~~a~~~~~~~~ld~~vl~~~~~~~~~~~~ 80 (241)
T smart00052 1 ERELRQALENGQFLLYYQPIVSLRTGRLVGVEALIRWQHPEGGIISPDEFIPLAEETGLIVPLGRWVLEQACQQLAEWQA 80 (241)
T ss_pred CHHHHHHHHCCCEEEEEECCEECCCCCEEEEEEEEEEECCCCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96799999889989998110898999999999999788799988889999999998597189999999999999999897
Q ss_pred HCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 15899849999769779439148999999998819995469999713377509998999999999889899991887764
Q gi|254780468|r 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 (963)
Q Consensus 788 ~~~~~~~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ 867 (963)
T Consensus 81 ~~~--~~~l~iNls~~~l~~~~f~~~l~~~l~~~~~~~~~lv~Ei~E~~~~~~~~~~~~~i~~l~~~G~~iaiDdfG~~~ 158 (241)
T smart00052 81 QGP--PLRISINLSARQLISPDLVPRVLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLRELGVRIALDDFGTGY 158 (241)
T ss_pred HCC--CEEEEEEECHHHHCCCHHHHHHHHHHHHHCCCHHHEEEEECHHHHHCCHHHHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 389--826999936899459359999999999809698892667235776408999999999999709978753789981
Q ss_pred HHHHHHHHCCCCEEEEEHHHHCCC--CHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCC
Q ss_conf 548889727998999716885399--945799999999999977980999703998999989980998994052068999
Q gi|254780468|r 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 (963)
Q Consensus 868 ssl~~L~~l~~d~iKiD~sfv~~~--~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~ 945 (963)
T Consensus 159 ~~~~~l~~l~~d~iKld~~li~~~~~~~~~~~~~~~l~~~a~~~g~~viaegVE~~~~~~~l~~~Gi~~~QG~~~~~P~p 238 (241)
T smart00052 159 SSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETPEQLDLLRSLGCDYGQGYLFSRPLP 238 (241)
T ss_pred CHHHHHHHCCCHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 01899986572042247999961326845589999999999985998999718819999999974999988686475899
Q ss_pred HHH
Q ss_conf 899
Q gi|254780468|r 946 FNS 948 (963)
Q Consensus 946 ~~~ 948 (963)
T Consensus 239 ~~~ 241 (241)
T smart00052 239 LDD 241 (241)
T ss_pred CCC
T ss_conf 998