HHsearch alignment for GI: 254780468 and conserved domain: smart00267
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=99.96 E-value=2.1e-27 Score=238.12 Aligned_cols=163 Identities=33% Similarity=0.544 Sum_probs=151.1
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 63067753240669999999999998755338984899999767857988842778899999999999998348997699
Q gi|254780468|r 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 (963)
Q Consensus 531 ~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~~~~la 610 (963)
T Consensus 1 ~lA~~D~lTgL~Nr~~f~~~l~~~~~~~~~~~~-~~~li~i~id~f~~in~~~G~~~gd~~l~~~a~~l~~~~~~~~~~~ 79 (163)
T smart00267 1 RLAFRDPLTGLPNRRYFEEELEQELQRAQRQGS-PFALLLIDLDNFKDINDTYGHAVGDELLQEVAQRLSSCLRPGDLLA 79 (163)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CEEEEEEECCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf 968880334852099999999999998885099-5899999898457887533853356665420101102577777899
Q ss_pred EEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98064102025566998999998765554310115525467999999877645898899899999999999999870897
Q gi|254780468|r 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 (963)
Q Consensus 611 R~~gdeFaill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~Al~~Ak~~g~~ 690 (963)
T Consensus 80 R~~~d~F~ill~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~t~siGia~~~~~~~~~~~ll~~A~~Al~~Ak~~G~n 158 (163)
T smart00267 80 RLGGDEFALLLPET-SLEEAIALAERILQQLREPIIIHGIPLYLTISIGVAAYPNPGEDAEDLLKRADTALYQAKKAGRN 158 (163)
T ss_pred ECCCCEEEEEECCC-CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 72799899997899-99999999999999996343026954889888999982799999999999999999999985999
Q ss_pred CEEEC
Q ss_conf 40520
Q gi|254780468|r 691 HVESF 695 (963)
Q Consensus 691 ~~~~~ 695 (963)
T Consensus 159 ~~~~y 163 (163)
T smart00267 159 QVAVY 163 (163)
T ss_pred EEEEC
T ss_conf 79969