HHsearch results for GI: 254780468 and protein with PDBid: 1ll8_A
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.35 E-value=2.7e-07 Score=74.40 Aligned_cols=104 Identities=8% Similarity=0.100 Sum_probs=83.9
Q ss_pred HCCCCEEEEEECC-CCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCC---EEEEEEEEEC
Q ss_conf 3259389999879-97899988899762899778338978988626976899999999999607897---3899999986
Q gi|254780468|r 412 LGSGDIVWDWDIV-RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRA 487 (963)
Q Consensus 412 ~~s~~~i~~~d~~-~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~---~~~~e~r~r~ 487 (963)
+..+++|+..|.+ |.++++|++++++|||+++++.+. .+.+++++++.+.....+....+.... ....+..+++
T Consensus 5 ~~~n~AI~~~d~~~g~I~~~N~~a~~l~Gys~~el~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 82 (114)
T 1ll8_A 5 PEFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQ--KLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIIS 82 (114)
T ss_dssp TTTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTS--BGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECC
T ss_pred HHCCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHHCC--CHHHHCCCCCHHHHHHHHHHHHHCCCCEECEEEEEEEEEC
T ss_conf 33081799999999999996399998867266988498--7336149205999999999999658971000015998880
Q ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 99968999872267687999889999999853
Q gi|254780468|r 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 (963)
Q Consensus 488 ~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DI 519 (963)
+||..+|++++.+++..+++. .++++++||
T Consensus 83 ~dG~~~~v~~s~~~i~~~~~~--~~l~vl~dv 112 (114)
T 1ll8_A 83 RSGEKIPVSVWMKRMRQERRL--CCVVVLEPV 112 (114)
T ss_dssp TTCCCEEEECCEECCBSSSSB--EEEEEEEEC
T ss_pred CCCEEEEEEEEEEEEEECCEE--EEEEEEEEC
T ss_conf 699699999999999999948--999999965