HHsearch results for GI: 254780468 and protein with PDBid: 1wa9_A
>1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A
Probab=98.42 E-value=3.2e-09 Score=89.91 Aligned_cols=116 Identities=12% Similarity=0.091 Sum_probs=86.6
Q ss_pred CCE--EEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHH----------CCCCCEEE--
Q ss_conf 938--9999879978999888997628997783389789886269768999999999996----------07897389--
Q gi|254780468|r 415 GDI--VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV----------GYRRGRLQ-- 480 (963)
Q Consensus 415 ~~~--i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~----------~~~~~~~~-- 480 (963)
-|| +...+.+|.++|+||++++++||+++++.|. ++.+++||+|++.+...+.... ......+.
T Consensus 6 ~~~f~~vi~~~dG~i~~vN~~~~~~lGys~~EliG~--~~~d~ihpeD~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (368)
T 1wa9_A 6 EDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGR--SFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVM 83 (368)
T ss_dssp CCCEEEEEETTTCBEEEECTTHHHHHCCCTTSSTTS--BGGGGBCTTTHHHHHHHTTSCC------------CCCEEEEE
T ss_pred CCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEEEEE
T ss_conf 686899999999889999869999879199998699--799965997999999985136765201124555661689998
Q ss_pred -----------EEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHH
Q ss_conf -----------9999986999689998722676879998899999998530577312321663
Q gi|254780468|r 481 -----------YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 (963)
Q Consensus 481 -----------~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~ 532 (963)
.+++.+.++|.+.|+..+.+++.+..|....+.++.+|||+++++++.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Dite~~~~e~~l~~~ 146 (368)
T 1wa9_A 84 LRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSY 146 (368)
T ss_dssp EECSCCCSSCCSSSCCCCCCEEEEEEECCBCCCCCCCC------CCSCCCEEEEEEEECCCSC
T ss_pred EECCCCCEECCEEEEEECCCEEEEEEEEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf 621256146443666313864899999888871235677302330102089999888887656