HHsearch results for GI: 254780468 and protein with PDBid: 3b33_A
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein, APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.37 E-value=4.8e-06 Score=64.29 Aligned_cols=109 Identities=8% Similarity=-0.018 Sum_probs=78.4
Q ss_pred HHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 89999983259389999879978999888997628997783389789886269768999999999996078973899999
Q gi|254780468|r 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 (963)
Q Consensus 405 er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r 484 (963)
+....++++.++||+..|.++.++++|+++++++|++++++.|+.. .+.+++++... ..+.......+.....+..
T Consensus 7 ~~~~~il~~~~~~viv~D~~g~I~~~N~aa~~llG~s~~~~~g~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 82 (115)
T 3b33_A 7 SLPSAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSL--SQLIQHASLDL--ALLTQPLQSGQSITDSDVT 82 (115)
T ss_dssp CHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBH--HHHCSEEECCT--HHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHHCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCCH--HHHCCCCHHHH--HHHHHHHHCCCCEEEEEEE
T ss_conf 9999998504666999989999999995561300101465529558--99468816788--9999999829956889999
Q ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECH
Q ss_conf 986999689998722676879998899999998530
Q gi|254780468|r 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 (963)
Q Consensus 485 ~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt 520 (963)
.+++|+.+|++++..|+.+++|.. ++..++||.
T Consensus 83 -~~~~G~~~~v~v~~spi~~~~~~~--ili~~rdid 115 (115)
T 3b33_A 83 -FVVDGRPLMLEVTVSPITWQRQLM--LLVEMRKID 115 (115)
T ss_dssp -EEETTEEEEEEEEEEEEEETTEEE--EEEEEEEC-
T ss_pred -EECCCEEEEEEEEEEEEEECCCEE--EEEEEEECC
T ss_conf -960990999999999999799619--999999689