HHsearch results for GI: 254780468 and protein with PDBid: 3bwl_A
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protein, PSI-2, protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.30 E-value=1.8e-10 Score=99.96 Aligned_cols=123 Identities=16% Similarity=0.163 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 53788899974888999998325938999987997899988899762899778338978988626976899999999999
Q gi|254780468|r 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 (963)
Q Consensus 392 ~~~~~~~~l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~ 471 (963)
+++..++.+..+.++++.+++++++++|.+|.+|.++++|+++++++||+++++.+.. +.++++|.|.+.....++.+
T Consensus 4 Erk~~e~~l~~se~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~--~~~l~~~~~~~~~~~~~~~~ 81 (126)
T 3bwl_A 4 ERKRREKRLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRS--IWEFDLMFDAEDVQTQLSGF 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSB--GGGTBTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCHHHHHCCCCHHHHHCCC--HHHHCCCCCHHHHHHHHHHH
T ss_conf 9999999999999999999962986199987999899741205655388689984498--98926824899999999999
Q ss_pred HCCCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECH
Q ss_conf 6078973899999986999689998722676879998899999998530
Q gi|254780468|r 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 (963)
Q Consensus 472 ~~~~~~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt 520 (963)
.. +.....|.+++++||+.+|+++++.++.. +|+ ..++|+++|||
T Consensus 82 ~~--~~~~~~e~~~~~~dG~~~~~~~~~~~~~~-~g~-~~~~~~~~DIT 126 (126)
T 3bwl_A 82 SV--DERRKFEGLYERRDGSTMSVEVHLLRFNL-EGE-DRFLAISRDIT 126 (126)
T ss_dssp CT--TCEEEEEEEEECTTSCEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred HH--CCCEEEEEEEECCCCCEEEEEEEEEEEEE-CCE-EEEEEEEEECC
T ss_conf 81--99669999999799999999999999997-995-99999999888