HHsearch results for GI: 254780468 and protein with PDBid: 3clo_A
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.90 E-value=5.9e-08 Score=79.67 Aligned_cols=131 Identities=16% Similarity=0.136 Sum_probs=94.8
Q ss_pred HHHHHHHH-HHHHHHCCCCEEEEEECCCCE-EEECHHHHHHHCCCHHHHCCC------HHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 99748889-999983259389999879978-999888997628997783389------7898862697689999999999
Q gi|254780468|r 399 GIFSDGER-QSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGP------IRNWLPYIHINDRDNFRTILDS 470 (963)
Q Consensus 399 ~l~~~~er-~~~al~~s~~~i~~~d~~~~~-~~~n~~~~~~lG~~~~~l~~~------~~~~~~~ihp~D~~~~~~~l~~ 470 (963)
++.++.++ .....+.++..+|..|...+. .++|+.+.+++||+++++... ...|.+.+||+|+.+.......
T Consensus 26 ~~l~~~~~~~~~~a~~~~~~~~~~D~~~~~~~y~s~~~~~~lGy~~~e~~~~~i~s~~~~~~~~~ihp~d~~~~~~~~~~ 105 (258)
T 3clo_A 26 GIVEQHQQFVRSLTEVNGGCAVISDLSNRKSYVTVHPWANFLGLTPEEAALSVIDSMDEDCIYRRIHPEDLVEKRLMEYK 105 (258)
T ss_dssp HHHHHHHHHHHHHHHHHSSEEEEEETTTTEEEEEECTTCGGGCCCHHHHHCCEESSSSCHHHHTTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCHHHHHCCCHHHCCCHHHHHCCHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999999867981999988378899986549999589956514134430236778615887689999999999
Q ss_pred HHC---------CCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHH
Q ss_conf 960---------78973899999986999689998722676879998899999998530577312321
Q gi|254780468|r 471 FVG---------YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 (963)
Q Consensus 471 ~~~---------~~~~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l 529 (963)
..+ ...-.+..++|+++++|+|+|+..++.++.++.+......+++.|++..+.....+
T Consensus 106 ~~~~l~~~~~~er~~y~~~~e~R~~~~~G~y~wi~~r~~vi~~~~~G~~~l~l~i~d~~~~~~~~~~~ 173 (258)
T 3clo_A 106 FFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTPAGNVWLIFCLYSLSADQRPEQGI 173 (258)
T ss_dssp HHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECTTSCEEEEEEEEEECSCCCCCSSC
T ss_pred HHHHHHHCCHHHHHCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCHHH
T ss_conf 99987507867642325789999974999899876202454137898775530233310012410233