HHsearch results for GI: 254780468 and protein with PDBid: 3clo_A

>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.90  E-value=5.9e-08  Score=79.67  Aligned_cols=131  Identities=16%  Similarity=0.136  Sum_probs=94.8

Q ss_pred             HHHHHHHH-HHHHHHCCCCEEEEEECCCCE-EEECHHHHHHHCCCHHHHCCC------HHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             99748889-999983259389999879978-999888997628997783389------7898862697689999999999
Q gi|254780468|r  399 GIFSDGER-QSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGP------IRNWLPYIHINDRDNFRTILDS  470 (963)
Q Consensus       399 ~l~~~~er-~~~al~~s~~~i~~~d~~~~~-~~~n~~~~~~lG~~~~~l~~~------~~~~~~~ihp~D~~~~~~~l~~  470 (963)
                      ++.++.++ .....+.++..+|..|...+. .++|+.+.+++||+++++...      ...|.+.+||+|+.+.......
T Consensus        26 ~~l~~~~~~~~~~a~~~~~~~~~~D~~~~~~~y~s~~~~~~lGy~~~e~~~~~i~s~~~~~~~~~ihp~d~~~~~~~~~~  105 (258)
T 3clo_A           26 GIVEQHQQFVRSLTEVNGGCAVISDLSNRKSYVTVHPWANFLGLTPEEAALSVIDSMDEDCIYRRIHPEDLVEKRLMEYK  105 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHSSEEEEEETTTTEEEEEECTTCGGGCCCHHHHHCCEESSSSCHHHHTTBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCHHHHHCCCHHHCCCHHHHHCCHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99999999999999867981999988378899986549999589956514134430236778615887689999999999


Q ss_pred             HHC---------CCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHH
Q ss_conf             960---------78973899999986999689998722676879998899999998530577312321
Q gi|254780468|r  471 FVG---------YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI  529 (963)
Q Consensus       471 ~~~---------~~~~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l  529 (963)
                      ..+         ...-.+..++|+++++|+|+|+..++.++.++.+......+++.|++..+.....+
T Consensus       106 ~~~~l~~~~~~er~~y~~~~e~R~~~~~G~y~wi~~r~~vi~~~~~G~~~l~l~i~d~~~~~~~~~~~  173 (258)
T 3clo_A          106 FFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTPAGNVWLIFCLYSLSADQRPEQGI  173 (258)
T ss_dssp             HHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECTTSCEEEEEEEEEECSCCCCCSSC
T ss_pred             HHHHHHHCCHHHHHCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCHHH
T ss_conf             99987507867642325789999974999899876202454137898775530233310012410233