HHsearch results for GI: 254780468 and protein with PDBid: 3cnb_A
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H}
Probab=95.87 E-value=0.088 Score=29.91 Aligned_cols=109 Identities=16% Similarity=0.213 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-
Q ss_conf 0999899999999988--9899991887764548889727998999716885399945799999999999977980999-
Q gi|254780468|r 839 GNPERSRLLLGRLRKI--GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA- 915 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~--G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA- 915 (963)
++......+.+.|++. |+.+.. ..+|...+..+.+.++|.|=+|-.+ .++ +.-.+++.|-+....-++.+|+
T Consensus 16 D~~~~~~~l~~~L~~~~~~~~v~~--a~~g~eAl~~~~~~~pDlillD~~m-P~~--dG~el~~~ir~~~~~~~ipvI~l 90 (143)
T 3cnb_A 16 DDKEFADMLTQFLENLFPYAKIKI--AYNPFDAGDLLHTVKPDVVMLDLMM-VGM--DGFSICHRIKSTPATANIIVIAM 90 (143)
T ss_dssp SCHHHHHHHHHHHHHHCTTCEEEE--ECSHHHHHHHHHHTCCSEEEEETTC-TTS--CHHHHHHHHHTSTTTTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEE--ECCHHHHHHHHHHCCCCEEEEECCC-CCC--CHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 999999999999982789808999--8999999999972799999980888-999--86999999984788899849999
Q ss_pred EECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 70399899998998099899405206899989999999851
Q gi|254780468|r 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 916 egVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
.+-.+.+......+.|++. |+.||+..+++...+++.
T Consensus 91 t~~~~~~~~~~~~~~Ga~~----yl~KP~~~~~L~~~i~~~ 127 (143)
T 3cnb_A 91 TGALTDDNVSRIVALGAET----CFGKPLNFTLLEKTIKQL 127 (143)
T ss_dssp ESSCCHHHHHHHHHTTCSE----EEESSCCHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 8489989999999769989----998989999999999999