HHsearch results for GI: 254780468 and protein with PDBid: 3cnb_A

>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H}
Probab=95.87  E-value=0.088  Score=29.91  Aligned_cols=109  Identities=16%  Similarity=0.213  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-
Q ss_conf             0999899999999988--9899991887764548889727998999716885399945799999999999977980999-
Q gi|254780468|r  839 GNPERSRLLLGRLRKI--GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-  915 (963)
Q Consensus       839 ~~~~~~~~~~~~l~~~--G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-  915 (963)
                      ++......+.+.|++.  |+.+..  ..+|...+..+.+.++|.|=+|-.+ .++  +.-.+++.|-+....-++.+|+ 
T Consensus        16 D~~~~~~~l~~~L~~~~~~~~v~~--a~~g~eAl~~~~~~~pDlillD~~m-P~~--dG~el~~~ir~~~~~~~ipvI~l   90 (143)
T 3cnb_A           16 DDKEFADMLTQFLENLFPYAKIKI--AYNPFDAGDLLHTVKPDVVMLDLMM-VGM--DGFSICHRIKSTPATANIIVIAM   90 (143)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCEEEE--ECSHHHHHHHHHHTCCSEEEEETTC-TTS--CHHHHHHHHHTSTTTTTSEEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCCEEEE--ECCHHHHHHHHHHCCCCEEEEECCC-CCC--CHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             999999999999982789808999--8999999999972799999980888-999--86999999984788899849999


Q ss_pred             EECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             70399899998998099899405206899989999999851
Q gi|254780468|r  916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER  956 (963)
Q Consensus       916 egVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~  956 (963)
                      .+-.+.+......+.|++.    |+.||+..+++...+++.
T Consensus        91 t~~~~~~~~~~~~~~Ga~~----yl~KP~~~~~L~~~i~~~  127 (143)
T 3cnb_A           91 TGALTDDNVSRIVALGAET----CFGKPLNFTLLEKTIKQL  127 (143)
T ss_dssp             ESSCCHHHHHHHHHTTCSE----EEESSCCHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf             8489989999999769989----998989999999999999