HHsearch results for GI: 254780468 and protein with PDBid: 3d72_A

>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A*
Probab=98.87  E-value=8e-08  Score=78.59  Aligned_cols=100  Identities=13%  Similarity=0.152  Sum_probs=76.7

Q ss_pred             CCEEEEEECCCC---EEEECHHHHHHHCCCHHHHCCCHHHHHHHC----------CHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             938999987997---899988899762899778338978988626----------9768999999999996078973899
Q gi|254780468|r  415 GDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWLPYI----------HINDRDNFRTILDSFVGYRRGRLQY  481 (963)
Q Consensus       415 ~~~i~~~d~~~~---~~~~n~~~~~~lG~~~~~l~~~~~~~~~~i----------hp~D~~~~~~~l~~~~~~~~~~~~~  481 (963)
                      +.+++..|..+.   ++++|+++++++||+++++.|+...++...          ...|.+.+....+...+  .+.++.
T Consensus        35 s~ai~i~D~~~~D~~IiyvN~af~~ltGy~~~EliGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~  112 (149)
T 3d72_A           35 SVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDR--NAEVQV  112 (149)
T ss_dssp             TSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHH--TCCEEE
T ss_pred             CCCEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCEEE
T ss_conf             661999958999896999867999988868899859990240164312454322222699999999999865--980898


Q ss_pred             EEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEE
Q ss_conf             99998699968999872267687999889999999
Q gi|254780468|r  482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA  516 (963)
Q Consensus       482 e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~  516 (963)
                      |++.+++||+.+|++.++.|++|++|++++++|+.
T Consensus       113 E~~~~~kdG~~~wv~~~~~Pi~de~G~i~~~vGiq  147 (149)
T 3d72_A          113 EVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQ  147 (149)
T ss_dssp             EEEEECTTCCEEEEEEEEEEEECTTSSEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEE
T ss_conf             99998699989999999999999998999999999