HHsearch results for GI: 254780468 and protein with PDBid: 3d72_A
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A*
Probab=98.87 E-value=8e-08 Score=78.59 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=76.7
Q ss_pred CCEEEEEECCCC---EEEECHHHHHHHCCCHHHHCCCHHHHHHHC----------CHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 938999987997---899988899762899778338978988626----------9768999999999996078973899
Q gi|254780468|r 415 GDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWLPYI----------HINDRDNFRTILDSFVGYRRGRLQY 481 (963)
Q Consensus 415 ~~~i~~~d~~~~---~~~~n~~~~~~lG~~~~~l~~~~~~~~~~i----------hp~D~~~~~~~l~~~~~~~~~~~~~ 481 (963)
+.+++..|..+. ++++|+++++++||+++++.|+...++... ...|.+.+....+...+ .+.++.
T Consensus 35 s~ai~i~D~~~~D~~IiyvN~af~~ltGy~~~EliGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~ 112 (149)
T 3d72_A 35 SVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDR--NAEVQV 112 (149)
T ss_dssp TSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHH--TCCEEE
T ss_pred CCCEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCEEE
T ss_conf 661999958999896999867999988868899859990240164312454322222699999999999865--980898
Q ss_pred EEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 99998699968999872267687999889999999
Q gi|254780468|r 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 (963)
Q Consensus 482 e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~ 516 (963)
|++.+++||+.+|++.++.|++|++|++++++|+.
T Consensus 113 E~~~~~kdG~~~wv~~~~~Pi~de~G~i~~~vGiq 147 (149)
T 3d72_A 113 EVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQ 147 (149)
T ss_dssp EEEEECTTCCEEEEEEEEEEEECTTSSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEE
T ss_conf 99998699989999999999999998999999999